| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032P13 | Sequence | 603 | 009726 (10) | emb|CDP06077.1| | 6e-26 | unnamed protein product [Coffea canephora] | 622 | 009726 (10) | emb|CDP06077.1| | 2e-25 | unnamed protein product [Coffea canephora] |
| JMFF039E08 | Sequence | 622 | 009726 (10) | emb|CDP06077.1| | 2e-25 | unnamed protein product [Coffea canephora] | |||||
| JMFN003F07 | Sequence | 642 | 009726 (10) | emb|CDP06077.1| | 1e-25 | unnamed protein product [Coffea canephora] | |||||
| JMFN008M21 | Sequence | 636 | 009726 (10) | emb|CDP06077.1| | 8e-26 | unnamed protein product [Coffea canephora] | |||||
| JMSF022C24 | Sequence | 651 | 009726 (10) | emb|CDP06077.1| | 9e-26 | unnamed protein product [Coffea canephora] | 738 | 009726 (10) | emb|CDP06077.1| | 2e-25 | unnamed protein product [Coffea canephora] |
| JMSF025L11 | Sequence | 696 | 009726 (10) | emb|CDP06077.1| | 1e-25 | unnamed protein product [Coffea canephora] | 670 | 009726 (10) | emb|CDP06077.1| | 1e-25 | unnamed protein product [Coffea canephora] |
| JMSF049K18 | Sequence | 689 | 022262 | ref|XP_009610792.1| | 3e-38 | PREDICTED: uncharacterized protein LOC104104419 isoform X1 [Nicotiana tomentosi | 693 | 009726 (10) | emb|CDP06077.1| | 1e-25 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF022C24- GATCTTCATCTATCACCGACGGACGAGCAGTCAACTGATCATTGCCC
rJMSF025L11+ GATCTTCATCTATCACCGACGGACGAGCAGTCAACTGATCATTGCCC
JMSF025L11- GATCTTCATCTATCACCGACGGACGAGCAGTCAACTGATCATTGCCC
JMFN008M21- CACCGACGGACGAGCAGTCAACTGATCATTGCCC
JMFF032P13- AACTGATCATTGCCC
rJMSF022C24+ TATCACCGACGGACGAGCAGTCAACTGATCATTGCCC
____________________________________________________________
consensus GATCTTCATCTATCACCGACGGACGAGCAGTCAACTGATCATTGCCC
. : . : . : . : . : . :
JMSF022C24- ACAATTCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
rJMSF025L11+ ACAATTCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
JMSF025L11- ACAATTCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
rJMSF049K18+ TCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
JMFN008M21- ACAATTCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
JMFN003F07- CTCC
JMFF032P13- ACAATTCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
rJMSF022C24+ ACAATTCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
____________________________________________________________
consensus ACAATTCACAAATCATTCATTCATTCATTCAATTATCACCTACTGAAATTATTGTACTCC
. : . : . : . : . : . :
JMSF022C24- GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
rJMSF025L11+ GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
JMSF025L11- GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
rJMSF049K18+ GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
JMFN008M21- GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
JMFN003F07- GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
JMFF032P13- GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
rJMSF022C24+ GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
rJMFF039E08+ ACAAGGAGGAATACGCGGAAGC
rJMFF032P13+ ACAAGGAGGAATACGCGGAAGC
____________________________________________________________
consensus GATGAGTGAAGAAGGCAAGCCAAGTTACCACCACCATCACAAGGAGGAATACGCGGAAGC
. : . : . : . : . : . :
JMSF022C24- GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
rJMSF025L11+ GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
JMSF025L11- GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
rJMSF049K18+ GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
JMFN008M21- GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
JMFN003F07- GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
JMFF032P13- GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
rJMSF022C24+ GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
rJMFF039E08+ GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
rJMFF032P13+ GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
____________________________________________________________
consensus GCCGCCGCCGCCGCCTCCTCAATATGGGACTTTCCAAGGGGTTGCGAACTACCCTCCTCA
. : . : . : . : . : . :
JMSF022C24- ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
rJMSF025L11+ ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
JMSF025L11- ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
rJMSF049K18+ ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
JMFN008M21- ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
JMFN003F07- ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
JMFF032P13- ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
rJMSF022C24+ ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
rJMFF039E08+ ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
rJMFF032P13+ ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
____________________________________________________________
consensus ACCGGTGGTTGGTTTTCCTCAGCCGACTGCTCCTCCTGGGGCCACCGGAGCTCCACCCGA
. : . : . : . : . : . :
JMSF022C24- GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
rJMSF025L11+ GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
JMSF025L11- GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
rJMSF049K18+ GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
JMFN008M21- GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
JMFN003F07- GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
JMFF032P13- GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
rJMSF022C24+ GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
rJMFF039E08+ GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
rJMFF032P13+ GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
____________________________________________________________
consensus GTTCTACTCTCACGGCTATCAGGCCGTTCCAGGTTATGCGGTTGTGGAGGGAACACCAGT
. : . : . : . : . : . :
JMSF022C24- GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
rJMSF025L11+ GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
JMSF025L11- GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
rJMSF049K18+ GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
JMFN008M21- GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
JMFN003F07- GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
JMFF032P13- GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
rJMSF022C24+ GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
rJMFF039E08+ GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
rJMFF032P13+ GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
____________________________________________________________
consensus GAGACCGCGCCGCCTCCCTTGCTGTGGTTGTGGATTTGGTTGGTTCTTGTTCATTATTGG
. : . : . : . : . : . :
JMSF022C24- TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
rJMSF025L11+ TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
JMSF025L11- TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
rJMSF049K18+ TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
JMFN008M21- TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
JMFN003F07- TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
JMFF032P13- TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
rJMSF022C24+ TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
rJMFF039E08+ TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
rJMFF032P13+ TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
____________________________________________________________
consensus TTTCTTCCTTGTTGCTATACCATGGTATCTTGCCGCATTCATTCTGCTTTGTGCGAGAGT
. : . : . : . : . : . :
JMSF022C24- GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
rJMSF025L11+ GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
JMSF025L11- GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
rJMSF049K18+ GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
JMFN008M21- GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
JMFN003F07- GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
JMFF032P13- GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
rJMSF022C24+ GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
rJMFF039E08+ GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
rJMFF032P13+ GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
____________________________________________________________
consensus GGATCCTCGTGAGAAACCAGGGTACATCACATGCACCATTGCAGCTGTTCTTGCTACAAT
. : . : . : . : . : . :
JMSF022C24- TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
rJMSF025L11+ TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
JMSF025L11- TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
rJMSF049K18+ TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
JMFN008M21- TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
JMFN003F07- TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
JMFF032P13- TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
rJMSF022C24+ TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
rJMFF039E08+ TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
rJMFF032P13+ TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
____________________________________________________________
consensus TGCCCTCATTTTTGGTCTAACTGCCGATTGATCGAGGATTTGCATATATAGGATGCTCTT
. : . : . : . : . : . :
JMSF022C24- CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
rJMSF025L11+ CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
JMSF025L11- CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
rJMSF049K18+ CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
JMFN008M21- CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
JMFN003F07- CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
JMFF032P13- CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTC
rJMSF022C24+ CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
rJMFF039E08+ CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
rJMFF032P13+ CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
____________________________________________________________
consensus CTGCAAGGTTATATGTACATATCCAAACTCTGCTCCAATTATAATTTCGTCCTGTACGTG
. : . : . : . : . : . :
JMSF022C24- TTGT
rJMSF025L11+ TTGTTGTTGT
JMSF025L11- TTGNTGTTGTTGTTAAAACTTTTACTTGTATTTAT
rJMSF049K18+ TTGTTGTTGTTGTTAAAACTTTTACTTGTATTTATTATTATTTTTTTNGGGAGAATGGCT
JMFN008M21- TT
JMFN003F07- TTGTTGTTGTTGTTAAAACTTTTACTTGTATTTATTATTATTTTTTTTGGGAGAATGGCT
rJMSF022C24+ TTGTTGTTGTTGTTAAAACTTTTACTTGTATTTATTATTATTTTTTTTGGGAGAATGGCT
rJMFF039E08+ TTGTTGTTGTTGTTAAAACTTTTACTTGTATTTATTATTATTTTTTTTGGGAGAATGGCT
rJMFF032P13+ TTGTTGTTGTTGTTAAAACTTTTACTTGTATTTATTATTATTTTTTTTGGGAGAATGGCT
____________________________________________________________
consensus TTGTTGTTGTTGTTAAAACTTTTACTTGTATTTATTATTATTTTTTTTGGGAGAATGGCT
. : . : . : . : . : . :
rJMSF049K18+ TTAAGATAC
JMFN003F07- TTAAGATACATACTTGGAATTGCTGTGATGTT
rJMSF022C24+ TTAAGATACATACTTGGAATTGCTGTGATGTT
rJMFF039E08+ TTAAGATACATACTTGGAATTGCTGTGATGTTTGACTACTAACATTGTACTTCATAAGAT
rJMFF032P13+ TTAAGATACATACTTGGAATTGCTGTGATGTTTGACTACTAACATTGTACTTCATAAGAT
____________________________________________________________
consensus TTAAGATACATACTTGGAATTGCTGTGATGTTTGACTACTAACATTGTACTTCATAAGAT