Contig 009723:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B03Sequence569011579 (9)ref|XP_009794575.1|1e-72PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]697009723 (9)ref|XP_006355233.1|2e-124PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF024B09Sequence531011579 (9)ref|XP_009794575.1|4e-60PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]645009723 (9)ref|XP_006355233.1|2e-113PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF027H19Sequence560011579 (9)ref|XP_009794575.1|3e-74PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]750009723 (9)ref|XP_006355233.1|1e-136PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF029M22Sequence551011579 (9)ref|XP_009794575.1|2e-67PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]707009723 (9)ref|XP_006355233.1|2e-132PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF032E19Sequence483011579 (9)ref|XP_009794575.1|8e-51PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]663009723 (9)ref|XP_006355233.1|1e-85PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF036G08Sequence576011579 (9)ref|XP_009794575.1|8e-75PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]703009723 (9)ref|XP_006355233.1|1e-125PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMSF011E14Sequence433011579 (9)ref|XP_009794575.1|5e-41PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]759009723 (9)ref|XP_006355233.1|3e-123PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMSF011M12Sequence276011579 (9)ref|XP_009794575.1|4e-12PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]717009723 (9)ref|XP_006355233.1|1e-137PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMSF028M24Sequence646011579 (9)ref|XP_009794575.1|5e-94PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]665009723 (9)ref|XP_006355233.1|6e-120PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011M12+ GATCTGAAGTTATCTACAAGACCAGAAAAATATCTTGGGGACTTGGA
rJMFF029M22+ CCAGAAAAATATCTTGGGGACTTGGA
rJMFF027H19+ ATCTGAAGTTATCTACAAGACCAGAAAAATATCTTGGGGACTTGGA
                      ____________________________________________________________
consensus GATCTGAAGTTATCTACAAGACCAGAAAAATATCTTGGGGACTTGGA
 
. : . : . : . : . : . :
rJMSF011M12+ ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF029M22+ ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF027H19+ ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF013B03+ GGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMSF028M24+ TTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF024B09+ G
rJMFF036G08+ TCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMSF011E14+ GGAAAAAGCTGAAGCCGCTNTTACAGATGCACTCAATGAATTTGGGAAACCCTG
                      ____________________________________________________________
consensus ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
 
. : . : . : . : . : . :
rJMSF011M12+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF029M22+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF027H19+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF013B03+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMSF028M24+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF024B09+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF036G08+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMSF011E14+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
                      ____________________________________________________________
consensus GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
 
. : . : . : . : . : . :
rJMSF011M12+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF029M22+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF027H19+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF013B03+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMSF028M24+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF024B09+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF036G08+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMSF011E14+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF032E19+ AAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTTCCCTCAGC
                      ____________________________________________________________
consensus TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
 
. : . : . : . : . : . :
rJMSF011M12+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF029M22+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF027H19+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF013B03+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMSF028M24+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF024B09+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF036G08+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMSF011E14+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF032E19+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
                      ____________________________________________________________
consensus GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
 
. : . : . : . : . : . :
rJMSF011M12+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF029M22+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF027H19+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF013B03+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMSF028M24+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF024B09+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF036G08+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMSF011E14+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF032E19+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
                      ____________________________________________________________
consensus ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
 
. : . : . : . : . : . :
rJMSF011M12+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF029M22+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF027H19+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF013B03+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMSF028M24+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF024B09+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF036G08+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMSF011E14+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF032E19+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
                      ____________________________________________________________
consensus GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
 
. : . : . : . : . : . :
rJMSF011M12+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF029M22+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF027H19+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF013B03+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMSF028M24+ CTCAAGCACATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF024B09+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF036G08+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMSF011E14+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF032E19+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
                      ____________________________________________________________
consensus CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
 
. : . : . : . : . : . :
rJMSF011M12+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF029M22+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF027H19+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF013B03+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMSF028M24+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF024B09+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF036G08+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMSF011E14+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF032E19+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
                      ____________________________________________________________
consensus TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
 
. : . : . : . : . : . :
rJMSF011M12+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF029M22+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF027H19+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF013B03+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMSF028M24+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF024B09+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF036G08+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMSF011E14+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF032E19+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
                      ____________________________________________________________
consensus ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
 
. : . : . : . : . : . :
rJMSF011M12+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF029M22+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF027H19+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF013B03+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMSF028M24+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF024B09+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF036G08+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMSF011E14+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF032E19+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
                      ____________________________________________________________
consensus GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
 
. : . : . : . : . : . :
rJMSF011M12+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF029M22+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF027H19+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF013B03+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMSF028M24+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF024B09+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF036G08+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMSF011E14+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF032E19+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
                      ____________________________________________________________
consensus TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
 
. : . : . : . : . : . :
rJMSF011M12+ GTCATTCAATA
rJMFF029M22+ GTCATTCAATATGACTTTTGGT
rJMFF027H19+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAA
rJMFF013B03+ GTCATTCAATATGACTTTTGGT
rJMSF028M24+ GTCATTCAATATGACT
rJMFF024B09+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAA
rJMFF036G08+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAA
rJMSF011E14+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAATGCAAAAGATCATTTTCTTCCAAA
rJMFF032E19+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAATGCAAAAGATCATTTTCTTCCAAA
                      ____________________________________________________________
consensus GTCATTCAATATGACTTTTGGTTGAACATGGCATAATGCAAAAGATCATTTTCTTCCAAA
 
. : . : . : . : . : . :
rJMSF011E14+ TTCATCCA
rJMFF032E19+ TTCATCCACTGTCACGGTATATTCTCTGCTTATACATACATGATTTTATTTTTTATTTAT
                      ____________________________________________________________
consensus TTCATCCACTGTCACGGTATATTCTCTGCTTATACATACATGATTTTATTTTTTATTTAT