| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013B03 | Sequence | 569 | 011579 (9) | ref|XP_009794575.1| | 1e-72 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 697 | 009723 (9) | ref|XP_006355233.1| | 2e-124 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMFF024B09 | Sequence | 531 | 011579 (9) | ref|XP_009794575.1| | 4e-60 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 645 | 009723 (9) | ref|XP_006355233.1| | 2e-113 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMFF027H19 | Sequence | 560 | 011579 (9) | ref|XP_009794575.1| | 3e-74 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 750 | 009723 (9) | ref|XP_006355233.1| | 1e-136 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMFF029M22 | Sequence | 551 | 011579 (9) | ref|XP_009794575.1| | 2e-67 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 707 | 009723 (9) | ref|XP_006355233.1| | 2e-132 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMFF032E19 | Sequence | 483 | 011579 (9) | ref|XP_009794575.1| | 8e-51 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 663 | 009723 (9) | ref|XP_006355233.1| | 1e-85 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMFF036G08 | Sequence | 576 | 011579 (9) | ref|XP_009794575.1| | 8e-75 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 703 | 009723 (9) | ref|XP_006355233.1| | 1e-125 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMSF011E14 | Sequence | 433 | 011579 (9) | ref|XP_009794575.1| | 5e-41 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 759 | 009723 (9) | ref|XP_006355233.1| | 3e-123 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMSF011M12 | Sequence | 276 | 011579 (9) | ref|XP_009794575.1| | 4e-12 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 717 | 009723 (9) | ref|XP_006355233.1| | 1e-137 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
| JMSF028M24 | Sequence | 646 | 011579 (9) | ref|XP_009794575.1| | 5e-94 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 665 | 009723 (9) | ref|XP_006355233.1| | 6e-120 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF011M12+ GATCTGAAGTTATCTACAAGACCAGAAAAATATCTTGGGGACTTGGA
rJMFF029M22+ CCAGAAAAATATCTTGGGGACTTGGA
rJMFF027H19+ ATCTGAAGTTATCTACAAGACCAGAAAAATATCTTGGGGACTTGGA
____________________________________________________________
consensus GATCTGAAGTTATCTACAAGACCAGAAAAATATCTTGGGGACTTGGA
. : . : . : . : . : . :
rJMSF011M12+ ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF029M22+ ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF027H19+ ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF013B03+ GGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMSF028M24+ TTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMFF024B09+ G
rJMFF036G08+ TCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
rJMSF011E14+ GGAAAAAGCTGAAGCCGCTNTTACAGATGCACTCAATGAATTTGGGAAACCCTG
____________________________________________________________
consensus ATCTTGGGAAAAAGCTGAAGCCGCTCTTACAGATGCACTCAATGAATTTGGGAAACCCTG
. : . : . : . : . : . :
rJMSF011M12+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF029M22+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF027H19+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF013B03+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMSF028M24+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF024B09+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMFF036G08+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
rJMSF011E14+ GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
____________________________________________________________
consensus GGAGATAAATGAGGGTGATGGAGCATTTTATGGGCCAAAAATTGATATTAGTGTTTGTGA
. : . : . : . : . : . :
rJMSF011M12+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF029M22+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF027H19+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF013B03+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMSF028M24+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF024B09+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF036G08+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMSF011E14+ TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
rJMFF032E19+ AAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTTCCCTCAGC
____________________________________________________________
consensus TGCAATGAAGAGGAAATTCCAATGTGCAACATTACAGCTGGACTTTCAACTT-CCTCAGC
. : . : . : . : . : . :
rJMSF011M12+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF029M22+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF027H19+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF013B03+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMSF028M24+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF024B09+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF036G08+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMSF011E14+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
rJMFF032E19+ GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
____________________________________________________________
consensus GCTTCAACTTATCTTATTCAGCAGAAGATGAGAGTAAGAGGGAGAGACCAGTTATGATAC
. : . : . : . : . : . :
rJMSF011M12+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF029M22+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF027H19+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF013B03+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMSF028M24+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF024B09+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF036G08+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMSF011E14+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
rJMFF032E19+ ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
____________________________________________________________
consensus ACAGAGCTATCCTTGGTTCCGTTGAACGCATGTTTGCCATACTTTTGGAGCACTTCAAGG
. : . : . : . : . : . :
rJMSF011M12+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF029M22+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF027H19+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF013B03+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMSF028M24+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF024B09+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF036G08+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMSF011E14+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
rJMFF032E19+ GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
____________________________________________________________
consensus GGAAGTGGCCTTTCTGGCTAAGTCCACGTCAGGCAATGGTCTGCCCTGTATCTGACAAAT
. : . : . : . : . : . :
rJMSF011M12+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF029M22+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF027H19+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF013B03+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMSF028M24+ CTCAAGCACATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF024B09+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF036G08+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMSF011E14+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
rJMFF032E19+ CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
____________________________________________________________
consensus CTCAAGCATATGGCATGGAGCTGCGTGATCGGATTCATGAAGCGGGTTTTCATGTTGATG
. : . : . : . : . : . :
rJMSF011M12+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF029M22+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF027H19+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF013B03+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMSF028M24+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF024B09+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF036G08+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMSF011E14+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
rJMFF032E19+ TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
____________________________________________________________
consensus TTGATACATCTGACAGGACAATCCAGAAAAAAGTACGGGAAGCTCAGGTTGCACAGTACA
. : . : . : . : . : . :
rJMSF011M12+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF029M22+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF027H19+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF013B03+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMSF028M24+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF024B09+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF036G08+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMSF011E14+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
rJMFF032E19+ ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
____________________________________________________________
consensus ACTACATATTAGTGGTTGGTGAAAAGGAAGCAACCACTGGAGAGGTTAGCGTCCGAGTGA
. : . : . : . : . : . :
rJMSF011M12+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF029M22+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF027H19+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF013B03+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMSF028M24+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF024B09+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF036G08+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMSF011E14+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
rJMFF032E19+ GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
____________________________________________________________
consensus GAGACATTCCTGATCACAAAGTGATGACGGTTGATGAACTCCTGGCTCACTTTAAGGATT
. : . : . : . : . : . :
rJMSF011M12+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF029M22+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF027H19+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF013B03+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMSF028M24+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF024B09+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF036G08+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMSF011E14+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
rJMFF032E19+ TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
____________________________________________________________
consensus TAATGGCATCATATAAGTAATACATTCCTGCTTGTAAGCCTTTTTATTTTATAGATCGCA
. : . : . : . : . : . :
rJMSF011M12+ GTCATTCAATA
rJMFF029M22+ GTCATTCAATATGACTTTTGGT
rJMFF027H19+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAA
rJMFF013B03+ GTCATTCAATATGACTTTTGGT
rJMSF028M24+ GTCATTCAATATGACT
rJMFF024B09+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAA
rJMFF036G08+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAA
rJMSF011E14+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAATGCAAAAGATCATTTTCTTCCAAA
rJMFF032E19+ GTCATTCAATATGACTTTTGGTTGAACATGGCATAATGCAAAAGATCATTTTCTTCCAAA
____________________________________________________________
consensus GTCATTCAATATGACTTTTGGTTGAACATGGCATAATGCAAAAGATCATTTTCTTCCAAA
. : . : . : . : . : . :
rJMSF011E14+ TTCATCCA
rJMFF032E19+ TTCATCCACTGTCACGGTATATTCTCTGCTTATACATACATGATTTTATTTTTTATTTAT
____________________________________________________________
consensus TTCATCCACTGTCACGGTATATTCTCTGCTTATACATACATGATTTTATTTTTTATTTAT