Contig 009716:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029C12Sequence602006604 (4)ref|XP_007023462.1|3e-66Magnesium transporter 2 isoform 2 [Theobroma cacao] gb|EOY26084.1| Magnesium tra670009716 (5)ref|XP_009764804.1|4e-75PREDICTED: magnesium transporter MRS2-1, partial [Nicotiana sylvestris]
JMSF030B11Sequence113009716 (5)
JMSF030C11Sequence658006604 (4)ref|XP_011034560.1|3e-76PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]811009716 (5)ref|XP_009764804.1|2e-95PREDICTED: magnesium transporter MRS2-1, partial [Nicotiana sylvestris]
JMSF031C11Sequence194009716 (5)ref|XP_006356254.1|3e-07PREDICTED: magnesium transporter MRS2-1-like [Solanum tuberosum]
JMSF032C21Sequence656006604 (4)ref|XP_011034560.1|1e-74PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]673009716 (5)ref|XP_009764804.1|5e-80PREDICTED: magnesium transporter MRS2-1, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF030C11+                                               GTTCAAAAGGTTAGAGATGAGAT
                      ____________________________________________________________
consensus                                                  GTTCAAAAGGTTAGAGATGAGAT
 
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rJMSF030C11+          AGAGCCAACTTATGGATGATGATGGAGACATGGCTGAAATGTATCTTACAGAGAAGAAAA
                      ____________________________________________________________
consensus             AGAGCCAACTTATGGATGATGATGGAGACATGGCTGAAATGTATCTTACAGAGAAGAAAA
 
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rJMSF030C11+          TGCGCATGGAATCATCATCACCATATGGTGATCATCAGTCTTTGATGGGGTTCAGGTCAA
                      ____________________________________________________________
consensus             TGCGCATGGAATCATCATCACCATATGGTGATCATCAGTCTTTGATGGGGTTCAGGTCAA
 
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rJMSF030B11+                                                                AAAGCN
rJMSF030C11+          ATGATGGCGCGCTATCTGTTTCTGCTCCAGTTTCTCCTGTTTCTTCACCTCCTGAAAGCA
rJMFF029C12+                                                                AAAGCA
                      ____________________________________________________________
consensus             ATGATGGCGCGCTATCTGTTTCTGCTCCAGTTTCTCCTGTTTCTTCACCTCCTGAAAGCA
 
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rJMSF030B11+          GGAAGCTCGAAAANAGTTCGAGCATTGTGAGAAGCNGACATGAGAGCACGAGAAGCTCAG
rJMSF030C11+          GGAAGCTTGAAAAAAGTTTGAGCATTGTGAGAAGCAGACATGAGAGCACGAGAAGCTCAG
rJMFF029C12+          GGAAGCTTGAAAAAAGTTTGAGCATTGTGAGAAGCAGACATGAGAGCACGAGAAGCTCAG
                      ____________________________________________________________
consensus             GGAAGCTTGAAAAAAGTTTGAGCATTGTGAGAAGCAGACATGAGAGCACGAGAAGCTCAG
 
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rJMSF030B11+          AAANCCTCACAGAAGCTCAANGTATAGAAGAGC                           
rJMSF030C11+          AAAGCCTCACAGAAGCTCAAAGTATAGAAGAGCTTGAGATGCTGTTGGAGGCTTATTTTG
rJMFF029C12+          AAAGCCTCACAGAAGCTCAAAGTATAGAAGAGCTTGAGATGCTGTTGGAGGCTTATTTTG
                      ____________________________________________________________
consensus             AAAGCCTCACAGAAGCTCAAAGTATAGAAGAGCTTGAGATGCTGTTGGAGGCTTATTTTG
 
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rJMSF030C11+          TCGTCATTGATAGCACCCTTAATAAGTTGACTTCGCTCAAGGAATATATTGATGACACGG
rJMFF029C12+          TCGTCATTGATAGCACCCTTAATAAGTTGACTTCGCTCAAGGAATATATTGATGACACGG
                      ____________________________________________________________
consensus             TCGTCATTGATAGCACCCTTAATAAGTTGACTTCGCTCAAGGAATATATTGATGACACGG
 
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rJMSF030C11+          AAGACTTCATTAACATTCAACTGGACAATGTTCGGAACCAGCTGATACAGTTTGAGTTGA
rJMSF032C21+                                GGACAATGTTCGGAACCAGCTGATACAGTTTGAGTTGA
rJMFF029C12+          AAGACTTCATTAACATTCAACTGGACAATGTTCGGAACCAGCTGATACAGTTTGAGTTGA
                      ____________________________________________________________
consensus             AAGACTTCATTAACATTCAACTGGACAATGTTCGGAACCAGCTGATACAGTTTGAGTTGA
 
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rJMSF031C11+                                               CGTGGTAGCGGGGATATTTGGGA
rJMSF030C11+          TACTCACAACCGCGACGTTTGTAGTTGCAATCTTTGGCGTGGTAGCGGGGATATTTGGGA
rJMSF032C21+          TACTCACAACCGCGACGTTTGTAGTTGCAATCTTTGGCGTGGTAGCGGGGATATTTGGGA
rJMFF029C12+          TACTCACAACCGCGACGTTTGTAGTTGCAATCTTTGGCGTGGTAGCGGGGATATTTGGGA
                      ____________________________________________________________
consensus             TACTCACAACCGCGACGTTTGTAGTTGCAATCTTTGGCGTGGTAGCGGGGATATTTGGGA
 
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rJMSF031C11+          TGAATNTTGAAATAGCATTGTTNGAAAAAANGANTNCATTCAAGGTGGGTGCTTATACTC
rJMSF030C11+          TGAATTTTGAAATAGCATTGTTTGAAAAAAAGAATGCATTCAA-GTGGGTGCTTATAATC
rJMSF032C21+          TGAATTTTGAAATAGCATTGTTTGAAAAAAAGAATGCATTCAA-GTGGGTGCTTATAATC
rJMFF029C12+          TGAATTTTGAAATAGCATTGTTTGAAAAAAAGAATGCATTCAA-GTGGGTGCTTATAATC
                      ____________________________________________________________
consensus             TGAATTTTGAAATAGCATTGTTTGAAAAAAAGAATGCATTCAA-GTGGGTGCTTATAATC
 
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rJMSF031C11+          ACAGGAGTGAGTGGAATGGTTGTNTTCTTCTCATTTTTANGNTTCNTCAAGTACAAAAGA
rJMSF030C11+          ACAGGAGTGAGTGGAATGGTTGTTTTCTTTTCATTTTTATGGTTCTTCAAGTACAAAAGA
rJMSF032C21+          ACAGGAGTGAGTGGAATGGTTGTTTTCTTTTCATTTTTATGGTTCTTCAAGTACAAAAGA
rJMFF029C12+          ACAGGAGTGAGTGGAATGGTTGTTTTCTTTTCATTTTTATGGTTCTTCAAGTACAAAAGA
                      ____________________________________________________________
consensus             ACAGGAGTGAGTGGAATGGTTGTTTTCTTTTCATTTTTATGGTTCTTCAAGTACAAAAGA
 
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rJMSF031C11+          NNGATGCCACTATAGATGGTTTCGNNTATCAAANTACGTACCCCATCCATC         
rJMSF030C11+          CTGATGCCACTATAGATGGTTTCGTTTATCAAACTACGTACCCCATCCATCCATTATTGG
rJMSF032C21+          CTGATGCCACTATAGATGGTTTCGTTTATCAAACTACGTACCCCATCCATCCATTATTGG
rJMFF029C12+          CTGATGCCACTATAGATGGTTTCGTTTATCAAACTACGTACCCCATCCATCCATTATTGG
                      ____________________________________________________________
consensus             CTGATGCCACTATAGATGGTTTCGTTTATCAAACTACGTACCCCATCCATCCATTATTGG
 
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rJMSF030C11+          CTCCTCACAAATATAAGTATAGTGATTCTAGGTAGAGTTCAGGAACATTTAAAATATTCA
rJMSF032C21+          CTCCTCACAAATATAAGTATAGTGATTCTAGGTAGAGTTCAGGAACATTTAAAATATTCA
rJMFF029C12+          CTCCTCACAAATATAAGTATAGTGATTCTAGGTAGAGTTCAGGAACATTTAAAATATTCA
                      ____________________________________________________________
consensus             CTCCTCACAAATATAAGTATAGTGATTCTAGGTAGAGTTCAGGAACATTTAAAATATTCA
 
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rJMSF030C11+          CAGTATTTGACTTACTGTCAAATGTTTCAGTCATTGAAAACAATACTATTCCATGTATTA
rJMSF032C21+          CAGTATTTGACTTACTGTCAAATGTTTCAGTCATTGAAAACAATACTATTCCATGTATTA
rJMFF029C12+          CAGTATTTGACTTACTGTCAAATGTTTCAGTCATTGAAAACAATACTATTCCATGTATTA
                      ____________________________________________________________
consensus             CAGTATTTGACTTACTGTCAAATGTTTCAGTCATTGAAAACAATACTATTCCATGTATTA
 
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rJMSF030C11+          TAAGACATT                                                   
rJMSF032C21+          TAAGACATTATATTCTGCAAACAT                                    
rJMFF029C12+          TAAGACATTATATTCTGCAAACATTGTGATAAAATAAATATATATCCAATAAGAAAAAAG
                      ____________________________________________________________
consensus             TAAGACATTATATTCTGCAAACATTGTGATAAAATAAATATATATCCAATAAGAAAAAAG