| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007H24 | Sequence | 492 | 003168 (7) | ref|XP_002313909.1| | 3e-73 | vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac | 736 | 009710 (7) | ref|XP_009760191.1| | 4e-54 | PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris] |
| JMFF022N10 | Sequence | 446 | 003168 (7) | gb|EYU37571.1| | 6e-15 | hypothetical protein MIMGU_mgv1a002851mg [Erythranthe guttata] | 742 | 009710 (7) | ref|XP_009760191.1| | 2e-55 | PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris] |
| JMFF027H08 | Sequence | 576 | 008092 (2) | ref|XP_009598407.1| | 5e-118 | PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana tomentosiformis] | 747 | 009710 (7) | ref|XP_009760191.1| | 9e-55 | PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris] |
| JMFF028I24 | Sequence | 478 | 003168 (7) | ref|XP_002313909.1| | 1e-76 | vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac | 572 | 009710 (7) | emb|CBI22461.3| | 2e-23 | unnamed protein product [Vitis vinifera] |
| JMSF028N24 | Sequence | 712 | 003168 (7) | ref|XP_002313909.1| | 1e-105 | vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac | 638 | 009710 (7) | emb|CDO97275.1| | 1e-33 | unnamed protein product [Coffea canephora] |
| JMSF045H24 | Sequence | 689 | 003168 (7) | ref|XP_002313909.1| | 2e-76 | vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac | 735 | 009710 (7) | ref|XP_009760191.1| | 8e-47 | PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris] |
| JMSF046J16 | Sequence | 726 | 003168 (7) | ref|XP_002313909.1| | 4e-81 | vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac | 704 | 009710 (7) | ref|XP_009760191.1| | 2e-46 | PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF022N10+ GTGGACGAGGAAGATGGCAAGTGCACATGTC
rJMFF007H24+ GAAGATGGCAAGTGCACATGTC
rJMSF045H24+ GAAGATGGCAAGTGCACATGTC
rJMFF027H08+ GAAGATGGCAAGTGCACATGTC
____________________________________________________________
consensus GTGGACGAGGAAGATGGCAAGTGCACATGTC
. : . : . : . : . : . :
rJMFF022N10+ CTCCAGGATTT-AAAGGAGACGGCAAAAGTTGTCAAGATATTGATGAATGCAAGGAAAAG
rJMFF007H24+ CTCCAGGATTT-AAAGGAGACGGCAAAAGTTGTCAAGATATTGATGAATGCAAGGAAAAG
rJMSF045H24+ CTCCAGGATTTAAAAGGAGACGGCAAAAGTTGTCAAGATATTGATGAATGCAAGGAAAAG
rJMSF046J16+ TT-AAAGGAGACGGCAAAAGTTGTCAAGATATTGATGAATGCAAGGAAAAG
rJMFF027H08+ CTCCAGGATTT-AAAGGAGACGGCAAAAGTTGTCAAGATATTGATGAATGCAAGGAAAAG
____________________________________________________________
consensus CTCCAGGATTT-AAAGGAGACGGCAAAAGTTGTCAAGATATTGATGAATGCAAGGAAAAG
. : . : . : . : . : . :
rJMFF022N10+ AAAGCCTGCCAGTGCCCTGAATGCAGCTGCACAAATACCTGGGGTAGCTACGAATGCACT
rJMFF007H24+ AAAGCCTGCCAGTGCCCTGAATGCAGCTGCACAAATACNTGGGGTAGCTACGAATGCACT
rJMSF045H24+ AAAGCCTGCCAGTGCCCTGAATGCAGCTGCACAAATACCTGGGGTAGCTACGAATGCACT
rJMSF028N24+ CTGAATGCAGCTGCACAAATACCTGGGGTAGCTACGAATGCACT
rJMFF028I24+ ACGAATGCACT
rJMSF046J16+ AAAGCCTGCCAGTGCCCTGAATGCAGCTGCACAAATACCTGGGGTAGCTACGAATGCACT
rJMFF027H08+ AAAGCCTGCCAGTGCCCTGAATGCAGCTGCACAAATACCTGGGGTAGCTACGAATGCACT
____________________________________________________________
consensus AAAGCCTGCCAGTGCCCTGAATGCAGCTGCACAAATACCTGGGGTAGCTACGAATGCACT
. : . : . : . : . : . :
rJMFF022N10+ TGTAGCAGTGACCTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
rJMFF007H24+ TGTAGCAGTGACCTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
rJMSF045H24+ TGTAGCAGTGACCTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
rJMSF028N24+ TGTAGCAGTGACCTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
rJMFF028I24+ TGTAGCAGTGACTTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
rJMSF046J16+ TGTAGCAGTGACCTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
rJMFF027H08+ TGTAGCAGTGACCTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
____________________________________________________________
consensus TGTAGCAGTGACCTACTGTACATGAGAGACCACGATACTTGCATTAGTAAGAAGGCTGCG
. : . : . : . : . : . :
rJMFF022N10+ ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
rJMFF007H24+ ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
rJMSF045H24+ ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
rJMSF028N24+ ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
rJMFF028I24+ ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
rJMSF046J16+ ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
rJMFF027H08+ ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
____________________________________________________________
consensus ACTGAAGTCAAGTCTGCATGGACTGCTGTATTGGTCATTATTATAGGACTCGCCATGGCT
. : . : . : . : . : . :
rJMFF022N10+ GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
rJMFF007H24+ GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
rJMSF045H24+ GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
rJMSF028N24+ GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
rJMFF028I24+ GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
rJMSF046J16+ GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
rJMFF027H08+ GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
____________________________________________________________
consensus GCTGGTGGGGCATATCTTGTATACAAATATAGATTTAGGTCATACATGGACACTGAGATC
. : . : . : . : . : . :
rJMFF022N10+ AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
rJMFF007H24+ AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
rJMSF045H24+ AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
rJMSF028N24+ AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
rJMFF028I24+ AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
rJMSF046J16+ AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
rJMFF027H08+ AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
____________________________________________________________
consensus AGGGCCATAATGGCGCAATACATGCCACTCGACAGCCAAAATGAAGTTCCATACCATGTT
. : . : . : . : . : . :
rJMFF022N10+ TCTGATGACCGTACCTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
rJMFF007H24+ TCTGATGACCGTACCTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
rJMSF045H24+ TCTGATGACCGTACCTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
rJMSF028N24+ TCTGATGACCGTACCTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
rJMFF028I24+ TNTGATGACCGTACNTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
rJMSF046J16+ TCTGATGACCGTACCTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
rJMFF027H08+ TCTGATGACCGTACCTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
____________________________________________________________
consensus TCTGATGACCGTACCTGAAGGATGGATACTTGTCGCTATGCATCCAAGAATGAAGTTCCC
. : . : . : . : . : . :
rJMFF022N10+ GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
rJMFF007H24+ GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
rJMSF045H24+ GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
rJMSF028N24+ GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
rJMFF028I24+ GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
rJMSF046J16+ GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
rJMFF027H08+ GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
____________________________________________________________
consensus GGAACTTTGTAAAAACTGTGCAGGAGAAAGGGAAGCCTCTAATCATTACCATTCTTTCAG
. : . : . : . : . : . :
rJMFF022N10+ AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
rJMFF007H24+ AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
rJMSF045H24+ AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
rJMSF028N24+ AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
rJMFF028I24+ AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
rJMSF046J16+ AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
rJMFF027H08+ AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
____________________________________________________________
consensus AATCATTGCACAGGGATCAAATGCCTCTTTTCCTATCAAGGGTTGGTAAAATTATTTGGG
. : . : . : . : . : . :
rJMFF022N10+ AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
rJMFF007H24+ AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
rJMSF045H24+ AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
rJMSF028N24+ AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
rJMFF028I24+ AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
rJMSF046J16+ AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
rJMFF027H08+ AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
____________________________________________________________
consensus AGAGTTGTAAATTATGTCAGACAATAAACTTATAAACATCTTGTTTGGTGTCTTGTAACG
. : . : . : . : . : . :
rJMFF022N10+ TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
rJMFF007H24+ TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
rJMSF045H24+ TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
rJMSF028N24+ TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
rJMFF028I24+ TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
rJMSF046J16+ TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
rJMFF027H08+ TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
____________________________________________________________
consensus TTGTGAGCTAGGAATTAGCTAAGGTGCACCAGGGAATGTGGGGTTATGTAGATCCCCTCT
. : . : . : . : . : . :
rJMFF022N10+ ATGGTGGATGCTTTTAACGAGTGCAATTGTTTTTCTTATGCAACAGGAAATC
rJMFF007H24+ ATGGTGGATGCTTNTAACGAGTGCAATTGTTTTTCTTATGCAACAGGAAAT
rJMSF045H24+ ATGGTGGATGCTTTTAACGAGTGCAATTGTTTTTCTTATGCAA
rJMSF028N24+ ATGGTGGATGCTTTTAACGAGTGCAATTGTTTTTCTTATGCAACAGGAAATCAG
rJMFF028I24+ ATGGTGGATGCTTTTAACGAG
rJMSF046J16+ ATGGTGGATGCTTTTAACGAGTGCAATTGTTTTTCTTATGCAACAGGAAATCAG
rJMFF027H08+ ATGGTGGATGCTTTTAACGAGTGCAATTGTTTTTCTTATGCAACAGGAAATCAGTACATT
____________________________________________________________
consensus ATGGTGGATGCTTTTAACGAGTGCAATTGTTTTTCTTATGCAACAGGAAATCAGTACATT