clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF026K16 | Sequence | 467 | 003631 (2) | ref|XP_009370170.1| | 3e-35 | PREDICTED: serine carboxypeptidase II-3-like isoform X2 [Pyrus x bretschneideri | 658 | 009706 (3) | ref|XP_006434837.1| | 3e-49 | hypothetical protein CICLE_v10003343mg, partial [Citrus clementina] gb|ESR48077. |
JMFN016L06 | Sequence | 486 | 009706 (3) | ref|XP_006434837.1| | 2e-54 | hypothetical protein CICLE_v10003343mg, partial [Citrus clementina] gb|ESR48077. | |||||
JMSF017D02 | Sequence | 421 | 003631 (2) | ref|XP_009370170.1| | 5e-20 | PREDICTED: serine carboxypeptidase II-3-like isoform X2 [Pyrus x bretschneideri | 726 | 009706 (3) | ref|XP_006434837.1| | 6e-74 | hypothetical protein CICLE_v10003343mg, partial [Citrus clementina] gb|ESR48077. |
This contig is upended
. : . : . : . : . : . :
JMFN016L06- TGGGGAATGTGTATTAGTAT
rJMSF017D02+ AATGTGTATTTGTAT
____________________________________________________________
consensus TGGGGAATGTGTATTTGTAT
. : . : . : . : . : . :
JMFN016L06- GATATCTACGCGCCGTTATGACATTCTGACTCTCCCTCGTACCATATTCCAGGATTCGAT
rJMSF017D02+ GATATCTACGCGCCGTTATGTCATTCTGACTCTCCCTCGTTTCATATTTCAGGATTTGAT
____________________________________________________________
consensus GATATCTACGCGCCGTTATGTCATTCTGACTCTCCCTCGTTTCATATTTCAGGATTTGAT
. : . : . : . : . : . :
JMFN016L06- CCCTGCACTGAAGACTACATCCATGCCTACCTCAACAATCTTGAAGTTCAGACTGCCCTT
rJMSF017D02+ CCCTGCACTGAAGACTACATCCATGCCTACCTCAACAATCTTCAAGTCCAGACTGCCCTT
rJMFF026K16+ CCTGCACTGAAGACTACATCCATGCCTACCTCAACAATCTTCAAGTCCAGACTGCCCTT
____________________________________________________________
consensus CCCTGCACTGAAGACTACATCCATGCCTACCTCAACAATCTTCAAGTCCAGACTGCCCTT
. : . : . : . : . : . :
JMFN016L06- CATGCACATATTACCGCCACTCCCCATCCATGGAATAAACCAAATGACAGACTAAATATC
rJMSF017D02+ CATGCAAATATTACCGCCACTCCCCATCCATGGAATAAACGAAATGACAGACTAAATAGC
rJMFF026K16+ CATGCAAATATTACCGCCACTCCCCATCCATGGAATAAACGAAATGACAGACTAAATAGC
____________________________________________________________
consensus CATGCAAATATTACCGCCACTCCCCATCCATGGAATAAACGAAATGACAGACTAAATAGC
. : . : . : . : . : . :
JMFN016L06- GATTGGAAAATGCCGGCGACTGTATTGCCCATTGGGAAAGAATTGATGCATACTGGTATC
rJMSF017D02+ GATTGGAAAATGCCGGCGACTGTATTGCCCATTGTGAAAGAATTGATGCAAAGTGGTATC
rJMFF026K16+ GATTGGAAAATGCCGGCGACTGTATTGCCCATTGTGAAAGAATTGATGCAAAGTGGTATC
____________________________________________________________
consensus GATTGGAAAATGCCGGCGACTGTATTGCCCATTGTGAAAGAATTGATGCAAAGTGGTATC
. : . : . : . : . : . :
JMFN016L06- CGTTTGTGGATATATAGCGGTGATACGGATAGTATAATGCCATTGCCGGACACTAAACGT
rJMSF017D02+ CGTTTCTGGATATATAGTGGAGATACGGATAGTATAATGCCATTGTCGGACACTAGACGT
rJMFF026K16+ CGTTTCTGGATATATAGTGGAGATACGGATAGTATAATGCCATTGTCGGACACTAGACGT
____________________________________________________________
consensus CGTTTCTGGATATATAGTGGAGATACGGATAGTATAATGCCATTGTCGGACACTAGACGT
. : . : . : . : . : . :
JMFN016L06- TCCATAAACAAACTCGAGCCATCGGGTAAAACTTCCTGGTACCCATGGTATCTTCAAAGA
rJMSF017D02+ TCCATAAAGAAACTCGAGCCATCGGTTAAAACTTCCTGGTACCCATGGTATCTCCGAGGA
rJMFF026K16+ TCCATAAAGAAACTCGAGCCATCGGTTAAAACTTCCTGGTACCCATGGTATCTCCGAGGA
____________________________________________________________
consensus TCCATAAAGAAACTCGAGCCATCGGTTAAAACTTCCTGGTACCCATGGTATCTCCGAGGA
. : . : . : . : . : . :
JMFN016L06- TAGGCGGGTGGATCTGCAGTGGAATATGAGAACTTGACATTAATAACAGTAACAGGATCT
rJMSF017D02+ GAGGTGGGTGGATATGCAGTGGAGTATGAGAACTTGACATTAGTAACAGTAAGAGGATCT
rJMFF026K16+ GAGGTGGGTGGATATGCAGTGGAGTATGAGAACTTGACATTAGTAACAGTAAGAGGATCT
____________________________________________________________
consensus GAGGTGGGTGGATATGCAGTGGAGTATGAGAACTTGACATTAGTAACAGTAAGAGGATCT
. : . : . : . : . : . :
JMFN016L06- GGGCATTTTGTTCCTAG
rJMSF017D02+ GGGCATTTTGTTCCTAGTTACCAGCCAGCTCGTGCACTTGTACTCTTCACCTCATTCATC
rJMFF026K16+ GGGCATTTTGTTCCTAGTTA-CAGCCAGCTCGTGCACTTGTACTCTTCACCTCATTCATC
____________________________________________________________
consensus GGGCATTTTGTTCCTAGTTACCAGCCAGCTCGTGCACTTGTACTCTTCACCTCATTCATC
. : . : . : . : . : . :
rJMSF017D02+ AATGGACAACTCCCACCCCGACACCTAAACACAGTGCAACCACCCGACATGAATCTCCTC
rJMFF026K16+ AATGGACAACTCCCACCCCGACACCTAAACACAGTGCAACCACCCGACATGAATCTCCTC
____________________________________________________________
consensus AATGGACAACTCCCACCCCGACACCTAAACACAGTGCAACCACCCGACATGAATCTCCTC
. : . : . : . : . : . :
rJMSF017D02+ CGATCCTCTCAGGACAACAACAGAAGAACAAAACATCGGACTAAAACAATATAAACTCCA
rJMFF026K16+ CGATCCTCTCAGGACAACAACAGAAGAACAAAACATCGGACTAAAACAATATAAACTCCA
____________________________________________________________
consensus CGATCCTCTCAGGACAACAACAGAAGAACAAAACATCGGACTAAAACAATATAAACTCCA
. : . : . : . : . : . :
rJMSF017D02+ TGGTCAGAGGATTATATATATTGCAAGAAACAGCAAATTAAGTGCACAGGAAGTACAACG
rJMFF026K16+ TGGTCAGAGGATTATATATATTGCAAGAAACAGCAAATTAAGTGCACAGGAAGTACAACG
____________________________________________________________
consensus TGGTCAGAGGATTATATATATTGCAAGAAACAGCAAATTAAGTGCACAGGAAGTACAACG
. : . : . : . : . : . :
rJMSF017D02+ AAATCAGCCTATTATTATAAATAAATCAAGATTGTTGTAACAATTCTGAGT
rJMFF026K16+ AAATCAGCCTATTATTATAAATAAATCAAGATTGTTGTAACAATTCTGAGTTTACCAATG
____________________________________________________________
consensus AAATCAGCCTATTATTATAAATAAATCAAGATTGTTGTAACAATTCTGAGTTTACCAATG