Contig 009690:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007O11Sequence601009690 (7)ref|XP_011097310.1|7e-102PREDICTED: 50S ribosomal protein L13, chloroplastic [Sesamum indicum]778009690 (7)ref|XP_011097310.1|5e-92PREDICTED: 50S ribosomal protein L13, chloroplastic [Sesamum indicum]
JMFF021B01Sequence719009690 (7)ref|XP_011097310.1|8e-55PREDICTED: 50S ribosomal protein L13, chloroplastic [Sesamum indicum]
JMFF022K06Sequence441009690 (7)ref|XP_011097310.1|2e-78PREDICTED: 50S ribosomal protein L13, chloroplastic [Sesamum indicum]759009690 (7)ref|XP_011097310.1|5e-63PREDICTED: 50S ribosomal protein L13, chloroplastic [Sesamum indicum]
JMFF038B05Sequence541009690 (7)ref|XP_011097310.1|4e-105PREDICTED: 50S ribosomal protein L13, chloroplastic [Sesamum indicum]770009690 (7)ref|XP_011097310.1|7e-95PREDICTED: 50S ribosomal protein L13, chloroplastic [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF022K06- AGTAGGACGCCCGGA
                      ____________________________________________________________
consensus AGTAGGACGCCCGGA
 
. : . : . : . : . : . :
JMFF022K06- CTAGAAAACTCGTTGGGAGGGAGGCGATCGGAGAAACAGCTCAACAGTGTTGGAGATGGC
rJMFF038B05+ TCAACAGTGTTGGAGATGGC
JMFF038B05- AGCTCAACAGTGTTGGAGATGGC
JMFF007O11- AGCTCAACAGTGTTGGAGATGGC
rJMFF007O11+ AGCTCAACAGTGTTGGAGATGGC
                      ____________________________________________________________
consensus CTAGAAAACTCGTTGGGAGGGAGGCGATCGGAGAAACAGCTCAACAGTGTTGGAGATGGC
 
. : . : . : . : . : . :
JMFF022K06- GGCCACAGCCCAGTCC-TTTAGTGGCAATTTGAAGAAAGCACTTGCTGGCTTAAGACGAA
rJMFF038B05+ GGCCACAGCCCAGTCCTTTTAGTGGCAATTTGAAGAAAGCACTTGCTGGCTTAAGACGAA
JMFF038B05- GGCCACAGCCCAGTCC-TTTAGTGGCAATTTGAAGAAAGCACTTGCTGGCTTAAGACGAA
JMFF007O11- GGCCACAGCCCAGTCC-TTTAGTGGCAATTTGAAGAAAGCACTTGCTGGCTTAAGACGAA
rJMFF007O11+ GGCCACAGCCCAGTCC-TTTAGTGGCAA-TTGAAGAAAGCACTTGCTGGCTTAAGACGAA
                      ____________________________________________________________
consensus GGCCACAGCCCAGTCC-TTTAGTGGCAATTTGAAGAAAGCACTTGCTGGCTTAAGACGAA
 
. : . : . : . : . : . :
JMFF022K06- TTGATCTGGAAGGCTTAAGGTGGAGAGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGC
rJMFF038B05+ TTGATCTGGAAGGCTTAAGGTGGAGAGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGC
JMFF038B05- TTGATCTGGAAGGCTTAAGGTGGAGAGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGC
JMFF007O11- TTGATCTGGAAGGCTTAAGGTGGAGAGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGC
rJMFF007O11+ TTGATCTGGAAGGCTTAAGGTGGAGAGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGC
                      ____________________________________________________________
consensus TTGATCTGGAAGGCTTAAGGTGGAGAGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGC
 
. : . : . : . : . : . :
JMFF022K06- TGGCATCTCAAATATCAACTGTGGTTCAGGGTAAAGATAAGCCAACTTACGCGCCTAACT
rJMFF038B05+ TGGCATCTCAAATATCAACTGTGGTTCAGGGTAAAGATAAGCCAACTTACGCGCCTAACT
JMFF038B05- TGGCATCTCAAATATCAACTGTGGTTCAGGGTAAAGATAAGCCAACTTACGCGCCTAACT
JMFF007O11- TGGCATCTCAAATATCAACTGTGGTTCAGGGTAAAGATAAGCCAACTTACGCGCCTAACT
rJMFF007O11+ TGGCATCTCAAATATCAACTGTGGTTCAGGGTAAAGATAAGCCAACTTACGCGCCTAACT
rJMFF022K06+ GTGGTTCAGGGTAAAGATAAGCCAACTTACGCGCNTAACT
                      ____________________________________________________________
consensus TGGCATCTCAAATATCAACTGTGGTTCAGGGTAAAGATAAGCCAACTTACGCGCCTAACT
 
. : . : . : . : . : . :
JMFF022K06- GGGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
rJMFF038B05+ GGGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
JMFF038B05- GGGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
JMFF007O11- GGGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
rJMFF007O11+ GGGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
rJMFF022K06+ GGGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
rJMFF021B01+ GGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
                      ____________________________________________________________
consensus GGGACAAAGGGGACATGTGCATTGTGATCAATGCAAAGGATGTTTGTGTCACCGGAAGGA
 
. : . : . : . : . : . :
JMFF022K06- AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
rJMFF038B05+ AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
JMFF038B05- AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
JMFF007O11- AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
rJMFF007O11+ AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
rJMFF022K06+ AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
rJMFF021B01+ AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
                      ____________________________________________________________
consensus AACTCACTGATAAGTTCTACCGATGGCACACTGGGTATATTGGACACCTGAAGGAGAGGA
 
. : . : . : . : . : . :
JMFF022K06- GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
rJMFF038B05+ GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
JMFF038B05- GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
JMFF007O11- GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
rJMFF007O11+ GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
rJMFF022K06+ GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
rJMFF021B01+ GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
                      ____________________________________________________________
consensus GTTTAAAGGACCAGATGGCCAAGGATCCCACAGAAGTCATTCGCAAAGCAGTTCTTCGCA
 
. : . : . : . : . : . :
JMFF022K06- TGCTTCC
rJMFF038B05+ TGCTTCCAAGAAACAAATTGCGTGATGATCGAGATCGCAAATTGAGAATATTTGAAGGCA
JMFF038B05- TGCTTCCAAGAAACAAATTGCGTGATGATCGAGATCGCAAATTGAGAATATTTGAAGGCA
JMFF007O11- TGCTTCCAAGAAACAAATTGCGTGATGATCGAGATCGCAAATTGAGAATATTTGAAGGCA
rJMFF007O11+ TGCTTCCAAGAAACAAATTGCGTGATGATCGAGATCGCAAATTGAGAATATTTGAAGGCA
rJMFF022K06+ TGCTTCCAAGAAACAAATTGCGTGATGATCGAGATCGCAAATTGAGAATATTTGAAGGCA
rJMFF021B01+ TGCTTCCAAGAAACAAATTGCGTGATGATCGAGATCGCAAATTGAGAATATTTGAAGGCA
                      ____________________________________________________________
consensus TGCTTCCAAGAAACAAATTGCGTGATGATCGAGATCGCAAATTGAGAATATTTGAAGGCA
 
. : . : . : . : . : . :
rJMFF038B05+ GTGAGCATCCCTTTGGTGACCGGCCTCTAGAGCCTTATGTGATGCCACCACGGCAAGTGC
JMFF038B05- GTGAGCATCCCTTTGGTGACCGGCCTCTANAGCCTTATGTGATGCCACCACGGCAAGTGC
JMFF007O11- GTGAGCATCCCTTTGGTGACCGGCCTCTAGAGCCTTATGTGATGCCACCACGGCAAGTGC
rJMFF007O11+ GTGAGCATCCCTTTGGTGACCGGCCTCTAGAGCCTTATGTGATGCCACCACGGCAAGTGC
rJMFF022K06+ GTGAGCATCCCTTTGGTGACCGGCCTCTAGAGCCTTATGTGATGCCACCACGGCAAGTGC
rJMFF021B01+ GTGAGCATCCCTTTGGTGACCGGCCTCTAGAGCCTTATGTGATGCCACCACGGCAAGTGC
                      ____________________________________________________________
consensus GTGAGCATCCCTTTGGTGACCGGCCTCTAGAGCCTTATGTGATGCCACCACGGCAAGTGC
 
. : . : . : . : . : . :
rJMFF038B05+ GTGAAATGCGACCTCGTGCTAGGCGGGCCATGATTCGAGCTCAAAAGAAGGCTGAGCAAC
JMFF038B05- GTGAAATGCGACCTCGTGCTAGGCGGGCCATGATTC
JMFF007O11- GTGAAATGCGACCTCGTGCTANGCGGGCCATGATTCGAGCTCAAAAGAAGGCTGAGCAAC
rJMFF007O11+ GTGAAATGCGACCTCGTGCTAGGCGGGCCATGATTCGAGCTCAAAAGAAGGCTGAGCAAC
rJMFF022K06+ GTGAAATGCGACCTCGTGCTAGGCGGGCCATGATTCGAGCTCAAAAGAAGGCTGAGCAAC
rJMFF021B01+ GTGAAATGCGACCTCGTGCTAGGCGGGCCATGATTCGAGCTCAAAAGAAGGCTGAGCAAC
                      ____________________________________________________________
consensus GTGAAATGCGACCTCGTGCTAGGCGGGCCATGATTCGAGCTCAAAAGAAGGCTGAGCAAC
 
. : . : . : . : . : . :
rJMFF038B05+ AGGGAGCTACAGTTTCAAAGATGGGCAAAAGGAAAGAGGTGGAAGCAGCAGAGAATAATG
JMFF007O11- AGGGAGCTACAGTTTCAAAGATGGGCAAAAGGAAAG
rJMFF007O11+ AGGGAGCTACAGTTTCAAAGATGGGCAAAAGGAAAGAGGTGGAAGCAGCAGAGAATAATG
rJMFF022K06+ AGGGAGCTACAGTTTCAAAGATGGGCAAAAGGAAAGAGGTGGAAGCAGCAGAGAATAATG
rJMFF021B01+ AGGGAGCTACAGTTTCAAAGATGGGCAAAAGGAAAGAGGTGGAAGCAGCAGAGAATAATG
                      ____________________________________________________________
consensus AGGGAGCTACAGTTTCAAAGATGGGCAAAAGGAAAGAGGTGGAAGCAGCAGAGAATAATG
 
. : . : . : . : . : . :
rJMFF038B05+ CATGAGTTTTAATTTTGCCAATTTTACATGGCTTTCTGTAACTACCATCACAATCTTAGA
rJMFF007O11+ CATGAGTTTTAATTTTGCCAATTTTACATGGCTTTCTGTAACTACCATCACAATCTTAGA
rJMFF022K06+ CATGAGTTTTAATTTTGCCAATTTTACATGGCTTTCTGTAACTACCATCACAATCTTAGA
rJMFF021B01+ CATGAGTTTTAATTTTGCCAATTTTACATGGCTTTCTGTAACTACCATCACAATCTTAGA
                      ____________________________________________________________
consensus CATGAGTTTTAATTTTGCCAATTTTACATGGCTTTCTGTAACTACCATCACAATCTTAGA
 
. : . : . : . : . : . :
rJMFF038B05+ TGGGTACTAGCTGTTTTAAGTACTGAAATTTGATCTCAAATGACTCCAGCTTGGAA-TTG
rJMFF007O11+ TGGGTACTAGCTGTTTTAAGTACTGAAATTTGATCTCAAATGACTCCAGCTTGGAA-TTG
rJMFF022K06+ TGGGTACTAGCTGTTTTAAGTACTGAAATTTGATCTCAAATGACTCCAGCTTGGAATTTG
rJMFF021B01+ TGGGTACTAGCTGTTTTAAGTACTGAAATTTGATCTCAAATGACTCCAGCTTGGAATTTG
                      ____________________________________________________________
consensus TGGGTACTAGCTGTTTTAAGTACTGAAATTTGATCTCAAATGACTCCAGCTTGGAATTTG
 
. : . : . : . : . : . :
rJMFF038B05+ AAAGGGATTTCTCATTGTTATAT
rJMFF007O11+ AAAGGGATTTCTCATTGTTATAT
rJMFF022K06+ AAAGGGATTTCTCATTGTTATATGCAAACAACTTATTTACTTTCTATAGGTGTTCTTAGC
rJMFF021B01+ AAAGGGATTTCTCATTGTTATATGCAAACAACTTATTTACTTTCTATAGGTGTTCTTAGC
                      ____________________________________________________________
consensus AAAGGGATTTCTCATTGTTATATGCAAACAACTTATTTACTTTCTATAGGTGTTCTTAGC
 
. : . : . : . : . : . :
rJMFF022K06+ ATCTTTTCTTAATGTGGATTGCTATGTCTTTCATAGCATCTTTTCTATTGCTATGTCTTT
rJMFF021B01+ ATCTTTTCTTAATGTGGATTGCTATGTCTTTCATAGCATCTTTTCTATTGCTATGTCTTT
                      ____________________________________________________________
consensus ATCTTTTCTTAATGTGGATTGCTATGTCTTTCATAGCATCTTTTCTATTGCTATGTCTTT
 
. : . : . : . : . : . :
rJMFF022K06+ CGTTTGCTCATTAACTTCTTTGTAAGCATCTGCATATTCATGTATCTCAACAATCAAGT
rJMFF021B01+ CGTTTGCTCATTAACTTCTTTGTAAGCATCTGCATATTCATGTATCTCAACAATCAAGTC
                      ____________________________________________________________
consensus CGTTTGCTCATTAACTTCTTTGTAAGCATCTGCATATTCATGTATCTCAACAATCAAGTC