| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011O05 | Sequence | 610 | 005011 (7) | ref|XP_002512528.1| | 1e-94 | importin alpha, putative [Ricinus communis] gb|EEF49980.1| importin alpha, putat | 119 | 009679 (7) | |||
| JMFF014I08 | Sequence | 706 | 009679 (7) | ref|XP_007031183.1| | 5e-82 | Importin alpha isoform 1 [Theobroma cacao] gb|EOY11685.1| Importin alpha isoform | |||||
| JMFF018D02 | Sequence | 781 | 009679 (7) | ref|XP_007031183.1| | 2e-97 | Importin alpha isoform 1 [Theobroma cacao] gb|EOY11685.1| Importin alpha isoform | |||||
| JMFF029A01 | Sequence | 486 | 005011 (7) | ref|XP_002512528.1| | 4e-65 | importin alpha, putative [Ricinus communis] gb|EEF49980.1| importin alpha, putat | 756 | 009679 (7) | ref|XP_007031183.1| | 3e-98 | Importin alpha isoform 1 [Theobroma cacao] gb|EOY11685.1| Importin alpha isoform |
| JMSF012F04 | Sequence | 250 | 005011 (7) | ref|XP_002512528.1| | 5e-16 | importin alpha, putative [Ricinus communis] gb|EEF49980.1| importin alpha, putat | 774 | 009679 (7) | ref|XP_007031183.1| | 3e-98 | Importin alpha isoform 1 [Theobroma cacao] gb|EOY11685.1| Importin alpha isoform |
| JMSF013B24 | Sequence | 207 | 005011 (7) | ref|XP_009796205.1| | 6e-05 | PREDICTED: importin subunit alpha-1 [Nicotiana sylvestris] | 768 | 009679 (7) | ref|XP_007031183.1| | 3e-97 | Importin alpha isoform 1 [Theobroma cacao] gb|EOY11685.1| Importin alpha isoform |
| JMSF053O15 | Sequence | 692 | 005011 (7) | ref|XP_002512528.1| | 1e-107 | importin alpha, putative [Ricinus communis] gb|EEF49980.1| importin alpha, putat | 777 | 009679 (7) | ref|XP_007031183.1| | 5e-118 | Importin alpha isoform 1 [Theobroma cacao] gb|EOY11685.1| Importin alpha isoform |
This contig is upended
. : . : . : . : . : . :
rJMSF053O15+ CTCTATCAACTTCTTACTCA
____________________________________________________________
consensus CTCTATCAACTTCTTACTCA
. : . : . : . : . : . :
rJMSF053O15+ AAATCACAAGAAAAGCATCAAGAAAGAAGCTTGTTGGACAATCTCTAATATCACTGCTGG
rJMFF029A01+ TGCTGG
rJMSF013B24+ TGCTGG
rJMSF012F04+ TGCTGG
rJMFF018D02+ GG
____________________________________________________________
consensus AAATCACAAGAAAAGCATCAAGAAAGAAGCTTGTTGGACAATCTCTAATATCACTGCTGG
. : . : . : . : . : . :
rJMSF053O15+ AAATAGAGCTCAAATACAGGCTGTTATTGAGGCAAATATCATTCTTCCTTTGGTATACCT
rJMFF029A01+ AAATAGAGCTCAAATACAGGCTGTTATTGAGGCAAATATCATTCTTCCTTTGGTATACCT
rJMSF013B24+ AAATAGAGCTCNAATACAGGCTGTTATTGAGGCAAATATCATTCTTCCTTTGGTATACCT
rJMSF012F04+ AAATAGAGCTCAAATACAGGCTGTTATTGAGGCAAATATCATTCTTCCTTTGGTATACCT
rJMFF018D02+ AAATAGAGCTCAAATACAGGCTGTTATTGAGGCAAATATCATTCTTCCTTTGGTATACCT
____________________________________________________________
consensus AAATAGAGCTCAAATACAGGCTGTTATTGAGGCAAATATCATTCTTCCTTTGGTATACCT
. : . : . : . : . : . :
rJMSF053O15+ CCTTCAAAATGCAGAATTTGACATCAAGAAAGAGGCAGCATGGGCTATCTCAAATGCCAC
rJMFF029A01+ CCTTCAAAATGCAGAATTTGACATCAAGAAAGAGGCAGCATGGGCTATCTCAAATGCCAC
rJMSF013B24+ CCTTCAAAATGCAGAATTTGACATCAAGAAAGAGGCAGCATGGGCTATCTCAAATGCCAC
rJMSF012F04+ CCTTCAAAATGCAGAATTTGACATCAAGAAAGAGGCAGCATGGGCTATCTCAAATGCCAC
rJMFF014I08+ ATGCAGAATTTGACATCAAGAAAGAGGCAGCATGGGCTATCTCAAATGCCAC
rJMFF018D02+ CCTTCAAAATGCAGAATTTGACATCAAGAAAGAGGCAGCATGGGCTATCTCAAATGCCAC
____________________________________________________________
consensus CCTTCAAAATGCAGAATTTGACATCAAGAAAGAGGCAGCATGGGCTATCTCAAATGCCAC
. : . : . : . : . : . :
rJMSF053O15+ TTCTGGAGGTTCTCATGAGCAGATTAGGTTCTTGGTTAATCAAGGCTGCATTAAGCCACT
rJMFF029A01+ TTCTGGAGGTTCTCATGAGCAGATTAGGTTCTTGGTTAATCAAGGCTGCATTAAGCCACT
rJMSF013B24+ TTCTGGAGGTTCTCATGAGCAGATTAGGTTCTTGGTTAATCAAGGCTGCATTAAGCCACT
rJMSF012F04+ TTCTGGAGGTTCTCATGAGCAGATTAGGTTCTTGGTTAATCAAGGCTGCATTAAGCCACT
rJMFF014I08+ TTCTGGAGGTTCTCATGAGCAGATTAGGTTCTTGGTTAATCAAGGCTGCATTAAGCCACT
rJMFF018D02+ TTCTGGAGGTTCTCATGAGCAGATTAGGTTCTTGGTTAATCAAGGCTGCATTAAGCCACT
____________________________________________________________
consensus TTCTGGAGGTTCTCATGAGCAGATTAGGTTCTTGGTTAATCAAGGCTGCATTAAGCCACT
. : . : . : . : . : . :
rJMSF053O15+ TTGTGATCTCCTGGTATGTCCCGATCCAAGAATTATTACTGTATGCCTTGAGGGGCTGGA
rJMFF029A01+ TTGTGATCTCCTGGTATGTCCCGATCCAAGAATTATTACTGTATGCCTTGAGGGGCTGGA
rJMSF013B24+ TTGTGATCTCCTGGTATGTCCCGATCCAAGAATTATTACTGTATGCCTTGAGGGGCTGGA
rJMSF012F04+ TTGTGATCTCCTGGTATGTCCCGATCCAAGAATTATTACTGTATGCCTTGAGGGGCTGGA
rJMFF014I08+ TTGTGATCTCCTGGTATGTCCCGATCCAAGAATTATTACTGTATGCCTTGAGGGGCTGGA
rJMFF018D02+ TTGTGATCTCCTGGTATGTCCCGATCCAAGAATTATTACTGTATGCCTTGAGGGGCTGGA
____________________________________________________________
consensus TTGTGATCTCCTGGTATGTCCCGATCCAAGAATTATTACTGTATGCCTTGAGGGGCTGGA
. : . : . : . : . : . :
rJMSF053O15+ AAACATTCTGAAGGTAGGCGAGGCTGACAAGGAAACGGGATTGAATGATGGGATCAATTT
rJMFF029A01+ AAACATTCTGAAGGTAGGCGAGGCTGACAAGGAAACGGGATTGAATGATGGGATCAATTT
rJMSF013B24+ AAACATTCTGAAGGTAGGCGAGGCTGACAAGGAAACGGGATTGAATGATGGGATCAATTT
rJMSF012F04+ AAACATTCTGAAGGTAGGCGAGGCTGACAAGGAAACGGGATTGAATGATGGGATCAATTT
rJMFF014I08+ AAACATTCTGAAGGTAGGCGAGGCTGACAAGGAAACGGGATTGAATGATGGGATCAATTT
rJMFF018D02+ AAACATTCTGAAGGTAGGCGAGGCTGACAAGGAAACGGGATTGAATGATGGGATCAATTT
____________________________________________________________
consensus AAACATTCTGAAGGTAGGCGAGGCTGACAAGGAAACGGGATTGAATGATGGGATCAATTT
. : . : . : . : . : . :
rJMSF053O15+ ATATGCACAACTCATTGACGAATGCGAAGGTTCAGACAAGCTAGAGCATCTCCAAACTCA
rJMFF029A01+ ATATGCACAACTCATTGACGAATGCGAAGGTTCAGACAAGCTAGAGCATCTCCAAACTCA
rJMSF013B24+ ATATGCACAACTCATTGACGAATGCGAAGGTTCAGACAAGCTAGAGCATCTCCAAACTCA
rJMSF012F04+ ATATGCACAACTCATTGACGAATGCGAAGGTTCAGACAAGCTAGAGCATCTCCAAACTCA
rJMFF014I08+ ATATGCACAACTCATTGACGAATGCGAAGGTTCAGACAAGCTAGAGCATCTCCAAACTCA
rJMFF018D02+ ATATGCACAACTCATTGACGAATGCGAAGGTTCAGACAAGCTAGAGCATCTCCAAACTCA
____________________________________________________________
consensus ATATGCACAACTCATTGACGAATGCGAAGGTTCAGACAAGCTAGAGCATCTCCAAACTCA
. : . : . : . : . : . :
rJMSF053O15+ CGACAACCATGAGATCTATGAGAAGGCTGTGAAGATCTTGGAGAAATTCTGGTCAGAGGA
rJMFF029A01+ CGACAACCATGAGATCTATGAGAAGGCTGTGAAGATCTTGGAGAAATTCTGGTCAGAGGA
rJMSF013B24+ CGACAACCATGAGATCTATGAGAAGGCTGTGAAGATCTTGGAGAAATTCTGGTCAGAGGA
rJMSF012F04+ CGACAACCATGAGATCTATGAGAAGGCTGTGAAGATCTTGGAGAAATTCTGGTCAGAGGA
rJMFF014I08+ CGACAACCATGAGATCTATGAGAAGGCTGTGAAGATCTTGGAGAAATTCTGGTCAGAGGA
rJMFF018D02+ CGACAACCATGAGATCTATGAGAAGGCTGTGAAGATCTTGGAGAAATTCTGGTCAGAGGA
____________________________________________________________
consensus CGACAACCATGAGATCTATGAGAAGGCTGTGAAGATCTTGGAGAAATTCTGGTCAGAGGA
. : . : . : . : . : . :
rJMSF053O15+ GGAGAATGAACAGCAAAACATAGGTGATGAAGTCGATGGAAATCAGCAGCAGGCCTTTAG
rJMFF029A01+ GGAGAATGAACAGCAAAACATAGGTGATGAAGTCGATGGAAATCAGCAGCAGGCCTTTAG
rJMSF013B24+ GGAGAATGAACAGCAAAACATAGGTGATGAAGTCGATGGAAATCAGCAGCAGGCCTTTAG
rJMSF012F04+ GGAGAATGAACAGCAAAACATAGGTGATGAAGTCGATGGAAATCAGCAGCAGGCCTTTAG
rJMFF014I08+ GGAGAATGAACAGCAAAACATAGGTGATGAAGTCGATGGAAATCAGCAGCAGGCCTTTAG
rJMFF011O05+ GATGGAAATCANCAGCNGGCCNTTAG
rJMFF018D02+ GGAGAATGAACAGCAAAACATAGGTGATGAAGTCGATGGAAATCAGCAGCAGGCCTTTAG
____________________________________________________________
consensus GGAGAATGAACAGCAAAACATAGGTGATGAAGTCGATGGAAATCAGCAGCAGGCCTTTAG
. : . : . : . : . : . :
rJMSF053O15+ CTTCGGGGAGAACCAACCTAATGTTCCCCCTGGGGGGTTCAAATTTGGGTAGGAGAAAAT
rJMFF029A01+ CTTCGGGGAGAACCAACCTAATGTTCCCCCTGGGGGGTTCAAATTTGGGTAGGAGAAAAT
rJMSF013B24+ CTTCGGGGAGAACCAACCTAATGTTCCCCCTGGGGGGTTCAAATTTGGGTAGGAGAAAAT
rJMSF012F04+ CTTCGGGGAGAACCAACCTAATGTTCCCCCTGGGGGGTTCAAATTTGGGTAGGAGAAAAT
rJMFF014I08+ CTTCGGGGAGAACCAACCTAATGTTCCCCCTGGGGGGTTCAAATTTGGGTAGGAGAAAAT
rJMFF011O05+ CTTNGGGGNGAACCNACCTAANGTTNCCCCNGGGGGGTTCAAANTTGGGTAGGNGAAAAN
rJMFF018D02+ CTTCGGGGAGAACCAACCTAATGTTCCCCCTGGGGGGTTCAAATTTGGGTAGGAGAAAAT
____________________________________________________________
consensus CTTCGGGGAGAACCAACCTAATGTTCCCCCTGGGGGGTTCAAATTTGGGTAGGAGAAAAT
. : . : . : . : . : . :
rJMSF053O15+ GTGCAGGTCAGGTTTGCTTGTGTTAATTGTTTCNTGTTTGTTAGGACGGAAACTTCTTGT
rJMFF029A01+ GTGCAGGTCAGGTTTGCTTGTGTTAATTGTTTCTTGTTTGTTAGGACGGAAACTTCTTGT
rJMSF013B24+ GTGCAGGTCAGGTTTGCTTGTGTTAATTGTTTCTTGTTTGTTAGGACGGAAACTTCTTGT
rJMSF012F04+ GTGCAGGTCAGGTTTGCTTGTGTTAATTGTTTCTTGTTTGTTAGGACGGAAACTTCTTGT
rJMFF014I08+ GTGCAGGTCAGGTTTGCTTGTGTTAATTGTTTCTTGTTTGTTAGGACGGAAACTTCTTGT
rJMFF011O05+ GTGCAGGTCAGGTTT
rJMFF018D02+ GTGCAGGTCAGGTTTGCTTGTGTTAATTGTTTCTTGTTTGTTAGGACGGAAACTTCTTGT
____________________________________________________________
consensus GTGCAGGTCAGGTTTGCTTGTGTTAATTGTTTCTTGTTTGTTAGGACGGAAACTTCTTGT
. : . : . : . : . : . :
rJMSF053O15+ NGCCATTTGCCATTTGCCAAGAGTCAGGTGTTTTTGGTCTGGCGCAACATAGGTTTTNAA
rJMFF029A01+ TGCCATTTGCCATTTGCCAAGAGTCAGGTGTTTTTGGTCTGGCGC-ACATAGGTTTTTAA
rJMSF013B24+ TGCCATTTGCCATTTGCCAAGAGTCAGGTGTTTTTGGTCTGGCGC-ACATAGGTTTTTAA
rJMSF012F04+ TGCCATTTGCCATTTGCCAAGAGTCAGGTGTTTTTGGTCTGGCGC-ACATAGGTTTTTAA
rJMFF014I08+ TGCCATTTGCCATTTGCCAAGAGTCAGGTGTTTTTGGTCTGGCGC-ACATAGGTTTTTAA
rJMFF018D02+ TGCCATTTGCCATTTGCCAAGAGTCAGGTGTTTTTGGTCTGGCGC-ACATAGGTTTTTAA
____________________________________________________________
consensus TGCCATTTGCCATTTGCCAAGAGTCAGGTGTTTTTGGTCTGGCGC-ACATAGGTTTTTAA
. : . : . : . : . : . :
rJMSF053O15+ ATCTCTGTTTAACTTCTTCACTGGGAGAATGTTTCTT
rJMFF029A01+ ATCTCTGTTTAACTTCTTCACTGGGAGAATGTTTCTTATACTTTTTGTCATTTTGTCTTC
rJMSF013B24+ ATCTCTGTTTAACTTCTTCACTGGGAGAATGTTTCTTATACTTTTTGTCATTTTGTCTTC
rJMSF012F04+ ATCTCTGTTTAACTTCTTCACTGGGAGAATGTTTCTTATACTTTTTGTCATTTTGTCTTC
rJMFF014I08+ ATCTCTGTTTAACTTCTTCACTGGGAGAATGTTTCTTATACTTTTTGTCATTTTGTCTTC
rJMFF018D02+ ATCTCTGTTTAACTTCTTCACTGGGAGAATGTTTCTTATACTTTTTGTCATTTTGTCTTC
____________________________________________________________
consensus ATCTCTGTTTAACTTCTTCACTGGGAGAATGTTTCTTATACTTTTTGTCATTTTGTCTTC
. : . : . : . : . : . :
rJMFF029A01+ CTCTTAATTGTAATT
rJMSF013B24+ CTCTTAATTGTAATTTCAGAACGAAAGAATCATT
rJMSF012F04+ CTCTTAATTGTAATTTCAGAACGAAAGAATCATT
rJMFF014I08+ CTCTTAATTGTAATTTCAGAACGAAAGAATCATT
rJMFF018D02+ CTCTTAATTGTAATTTCAGAACGAAAGAATCATTTGTCTACGATTGGCTTTCGTGGAAAA
____________________________________________________________
consensus CTCTTAATTGTAATTTCAGAACGAAAGAATCATTTGTCTACGATTGGCTTTCGTGGAAAA