Contig 009677:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-                                                                   ATTC
JMFF017L09-                                                                   ATTC
                      ____________________________________________________________
consensus                                                                     ATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           CATGCACACAGAATTCAAGCTAAGTATCATAAACACTCATCATATATATCATCCAAATAA
JMFF017L09-           CATGCACACAGAATTCAAGCTAAGTATCATAAACACTCATCATATATATCATCCAAATAA
                      ____________________________________________________________
consensus             CATGCACACAGAATTCAAGCTAAGTATCATAAACACTCATCATATATATCATCCAAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           TTGCAGAAAGAAAAAGAAAATGGTGATGATGAGAATCTTCTTCTTCCTTTTCCTCTTGGC
JMFF017L09-           TTGCAGAAAGAAAAAGAAAATGGTGATGATGAGAATCTTCTTCTTCCTTTTCCTCTTGGC
rJMFF017L09+                                                                    GC
                      ____________________________________________________________
consensus             TTGCAGAAAGAAAAAGAAAATGGTGATGATGAGAATCTTCTTCTTCCTTTTCCTCTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           CTTTCCGGTCTTCACTGCAAATGCATCAGTGAATGACTTCTGCGTGGCCAACGGCCCTGG
JMFF017L09-           CTTTCCGGTCTTCACTGCAAATGCATCAGTGAATGACTTCTGCGTGGCCAACGGCCCTGG
rJMFF040I20+                  TCTTCACTGCAAATGCATCAGTGAATGACTTCTGCGTGGCCAACGGCCCTGG
rJMFF017L09+          CTTTCCGGTCTTCACTGCAAATGCATCAGTGAATGACTTNTGCGTGGCCAACGGCCCTGG
                      ____________________________________________________________
consensus             CTTTCCGGTCTTCACTGCAAATGCATCAGTGAATGACTTCTGCGTGGCCAACGGCCCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           AGCCCGCGACA-CCCCGTCAGGCTTCGTGTGCAAGAATACCGCCAAAGTCACAGCCGCCG
JMFF017L09-           AGCCCGCGACA-CCCCGTCAGGCTTCGTGTGCAAGAATACCGCCAAAGTCACAGCCGCCG
rJMFF040I20+          AGCCCGCGACACCCCCGTCAGGCTTCGTGTGCAAGAATACCGCCAAAGTCACAGCCGCCG
rJMFF017L09+          AGCCCGCGACA-CCCCGTCAGGCTTCGTGTGCAAGAATACCGCCAAAGTCACAGCCGCCG
                      ____________________________________________________________
consensus             AGCCCGCGACA-CCCCGTCAGGCTTCGTGTGCAAGAATACCGCCAAAGTCACAGCCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           ACTTCGTCTACTCCGGCCTGGCAAAACCCGGCAACACCACCAACATCATCAACGCCGCCG
JMFF017L09-           ACTTCGTCTACTCCGGCCTGGCAAAACCCGGCAACACCACCAACATCATCAACGCCGCCG
rJMFF040I20+          ACTTCGTCTACTCCGGCCTGGCAAAACCCGGCAACACCACCAACATCATCAACGCCGCCG
rJMFF017L09+          ACTTCGTCTACTCCGGCCTGGCAAAACCCGGCAACACCACCAACATCATCAACGCCGCCG
                      ____________________________________________________________
consensus             ACTTCGTCTACTCCGGCCTGGCAAAACCCGGCAACACCACCAACATCATCAACGCCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           TTACTCCGGCGTTCGTGGGTCAGTTCCCGGGAGTGAACGGGCTGGGAGTCTCCCTTGCCC
JMFF017L09-           TTACTCCGGCGTTCGTGGGTCAGTTCCCGGGAGTGAACGGGCTGGGAGTCTCCCTTGCCC
rJMFF040I20+          TTACTCCGGCGTTCGTGGGTCAGTTCCCGGGAGTGAACGGGCTGGGAGTCTCCCTTGCCC
rJMFF017L09+          TTACTCCGGCGTTCGTGGGTCAGTTCCCGGGAGTGAACGGGCTGGGAGTCTCCCTTGCCC
                      ____________________________________________________________
consensus             TTACTCCGGCGTTCGTGGGTCAGTTCCCGGGAGTGAACGGGCTGGGAGTCTCCCTTGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           GCCTCGACTTGGCCCCCGGCGGAGTCATCCCCATGCACACCCACCCCGGCGCCTCGGAGA
JMFF017L09-           GCCTCGACTTGGCCCCCGGCGGAGTCATCCCCATGCACACCCACCCCGGCGCCTCGGAGA
rJMFF040I20+          GCCTCGACTTGGCCCCCGGCGGAGTCATCCCCATGCACACCCACCCCGGCGCCTCGGAGA
rJMFF017L09+          GCCTCGACTTGGCCCCCGGCGGAGTCATCCCCATGCACACCCACCCCGGCGCCTCGGAGA
                      ____________________________________________________________
consensus             GCCTCGACTTGGCCCCCGGCGGAGTCATCCCCATGCACACCCACCCCGGCGCCTCGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040I20-           TCTTGAACGTCGTGGAGGGCACGATCCTGGCCGCCTTCATTTCCTCCGGCAACA      
JMFF017L09-           TCTTGAACGTCGTGGAGGGCACGATCCTGGCCGCCTTCATTTCCTCCGGCAACAAGGTGT
rJMFF040I20+          TCTTGAACGTCGTGGAGGGCACGATCCTGGCCGCCTTCATTTCCTCCGGCAACAAGGTGT
rJMFF017L09+          TCTTGAACGTCGTGGAGGGCACGATCCTGGCCGCCTTCATTTCCTCCGGCAACAAGGTGT
                      ____________________________________________________________
consensus             TCTTGAACGTCGTGGAGGGCACGATCCTGGCCGCCTTCATTTCCTCCGGCAACAAGGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF017L09-           ACGAGAAGGCGCTGTACCCCGGCGACGTGATGGTTTTCCCTCAGGGACTCCTGCATTTTC
rJMFF040I20+          ACGAGAAGGCGCTGTACCCCGGCGACGTGATGGTTTTCCCTCAGGGACTCCTGCATTTTC
rJMFF017L09+          ACGAGAAGGCGCTGTACCCCGGCGACGTGATGGTTTTCCCTCAGGGACTCCTGCATTTTC
                      ____________________________________________________________
consensus             ACGAGAAGGCGCTGTACCCCGGCGACGTGATGGTTTTCCCTCAGGGACTCCTGCATTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF017L09-           AGGTGAACACGGGGAAAGGTAGCGCCCTGGCTTATGCGAGCTTCGGCAGCGCCAACCCGG
rJMFF040I20+          AGGTGAACACGGGGAAAGGTAGCGCCCTGGCTTATGCGAGCTTCGGCAGCGCCAACCCGG
rJMFF017L09+          AGGTGAACACGGGGAAAGGTAGCGCCCTGGCTTATGCGAGCTTCGGCAGCGCCAACCCGG
                      ____________________________________________________________
consensus             AGGTGAACACGGGGAAAGGTAGCGCCCTGGCTTATGCGAGCTTCGGCAGCGCCAACCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF017L09-           GGCTGCAAA                                                   
rJMFF040I20+          GGCTGCAAATCCTTGATTTCGCACTGTTTGCCAACGATCTTTCCACCAAGACCATCGCCG
rJMFF017L09+          GGCTGCAAATCCTTGATTTCGCACTGTTTGCCAACGATCTTTCCACCAAGACCATCGCCG
                      ____________________________________________________________
consensus             GGCTGCAAATCCTTGATTTCGCACTGTTTGCCAACGATCTTTCCACCAAGACCATCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040I20+          GGACCACTTTCCTCGACGAAGCTACCATTAAAAAGCTTAAGTCTGTTCTTGGAGGCACCA
rJMFF017L09+          GGACCACTTTCCTCGACGAAGCTACCATTAAAAAGCTTAAGTCTGTTCTTGGAGGCACCA
                      ____________________________________________________________
consensus             GGACCACTTTCCTCGACGAAGCTACCATTAAAAAGCTTAAGTCTGTTCTTGGAGGCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040I20+          ATTAGACACTGATCAATCCTCCATTTTCTT                              
rJMFF017L09+          ATTAGACACTGATCAATCCTCCATTTTCTTTGTTTTTGTTTTGATTTTCTGTCAAGAATT
                      ____________________________________________________________
consensus             ATTAGACACTGATCAATCCTCCATTTTCTTTGTTTTTGTTTTGATTTTCTGTCAAGAATT