| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017J06 | Sequence | 816 | 009676 (6) | emb|CDP00039.1| | 4e-90 | unnamed protein product [Coffea canephora] | |||||
| JMFF032B16 | Sequence | 764 | 009676 (6) | emb|CDP00039.1| | 6e-88 | unnamed protein product [Coffea canephora] | |||||
| JMSF015P21 | Sequence | 306 | 009676 (6) | ref|XP_006360615.1| | 7e-06 | PREDICTED: psbP-like protein 2, chloroplastic-like isoform X1 [Solanum tuberosu | 779 | 009676 (6) | emb|CDP00039.1| | 2e-90 | unnamed protein product [Coffea canephora] |
| JMSF052E20 | Sequence | 624 | 009676 (6) | emb|CDP00039.1| | 6e-66 | unnamed protein product [Coffea canephora] | 836 | 009676 (6) | emb|CDP00039.1| | 1e-91 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF015P21- AAGATAAAGAAATG
JMSF052E20- GGAGGCGCTGCATCTCTTTCTGCTAAGATAAAGAAATG
rJMSF052E20+ GGAGGCGCTGCATCTCTTTCTGCTAAGATAAAGAAATG
____________________________________________________________
consensus GGAGGCGCTGCATCTCTTTCTGCTAAGATAAAGAAATG
. : . : . : . : . : . :
JMSF015P21- GCAGCTTCATCACTCTCACTGCCTGTGGCTTCATCTGCCTTACCAAAAAGAATAAATAGG
JMSF052E20- GCAGCTTCATCACTCTCACTGCCTGTGGCTTCATCTGCCTTACCAAAAAGAATAAATAGG
rJMSF052E20+ GCAGCTTCATCACTCTCACTGCCTGTGGCTTCATCTGCCTTACCAAAAAGAATAAATAGG
____________________________________________________________
consensus GCAGCTTCATCACTCTCACTGCCTGTGGCTTCATCTGCCTTACCAAAAAGAATAAATAGG
. : . : . : . : . : . :
JMSF015P21- GCAACACCAAAACCTTGTTCATTGGCTCCCCAGAACATCATAGTATCATCCTCAAAGGAC
JMSF052E20- GCAACACCAAAACCTTGTTCATTGGCTCCCCAGAACATCATAGTATCATCCTCAAAGGAC
rJMSF052E20+ GCAACACCAAAACCTTGTTCATTGGCTCCCCAGAACATCATAGTATCATCCTCAAAGGAC
rJMSF015P21+ CATCATAGTATCATCCTCAAAGGAC
rJMFF017J06+ GCTCCCCAGAACATCATAGTATCATCCTCAAAGGAC
____________________________________________________________
consensus GCAACACCAAAACCTTGTTCATTGGCTCCCCAGAACATCATAGTATCATCCTCAAAGGAC
. : . : . : . : . : . :
JMSF015P21- AACACCTCTCCTGATGAATCCAGGAATTGTAAGAGAAGGCCACTGTTATTGGGACTAGGA
JMSF052E20- AACACCTCTCCTGATGAATCCAGGAATTGTAAGAGAAGGCCACTGTTATTGGGACTAGGA
rJMSF052E20+ AACACCTCTCCTGATGAATCCAGGAATTGTAAGAGAAGGCCACTGTTATTGGGACTAGGA
rJMSF015P21+ CACACCTCTCCTGATGAATCCAGGAATTGTAAGAGAAGGCCACTGTTATTGGGACTAGGA
rJMFF032B16+ GAATCCAGGAATTGTAAGAGAAGGCCACTGTTATTGGGACTAGGA
rJMFF017J06+ AACACCTCTCCTGATGAATCCAGGAATTGTAAGAGAAGGCCACTGTTATTGGGACTAGGA
____________________________________________________________
consensus AACACCTCTCCTGATGAATCCAGGAATTGTAAGAGAAGGCCACTGTTATTGGGACTAGGA
. : . : . : . : . : . :
JMSF015P21- GCATTGTCTTCATTAAGTTTGCTCCCTGCAAATCCCCTCTTGGCTGAAGTGCCAGAGAGA
JMSF052E20- GCATTGTCTTCATTAAGTTTGCTCCCTGCAAATCCCCTCTTGGCTGAAGTGCCAGAGAGA
rJMSF052E20+ GCATTGTCTTCATTAAGTTTGCTCCCTGCAAATCCCCTCTTGGCTGAAGTGCCAGAGAGA
rJMSF015P21+ GCATTGTCTTCATTAAGTTTGCTCCCTGCAAATCCCCTCTTGGCTGAAGTGCCAGAGAGA
rJMFF032B16+ GCATTGTCTTCATTAAGTTTGCTCCCTGCAAATCCCNTCTTGGCTGAAGTGCCAGAGAGA
rJMFF017J06+ GCATTGTCTTCATTAAGTTTGCTCCCTGCAAATCCCCTCTTGGCTGAAGTGCCAGAGAGA
____________________________________________________________
consensus GCATTGTCTTCATTAAGTTTGCTCCCTGCAAATCCCCTCTTGGCTGAAGTGCCAGAGAGA
. : . : . : . : . : . :
JMSF015P21- TTTTCAGCTTTTGTTGACAAAGAAGATGGTTATGCCTATTACTATCCTTCA
JMSF052E20- TTTTCAGCTTTTGTTGACAAAGAAGATGGTTATGCCTATTACTATCCTTCAGATTGGACA
rJMSF052E20+ TTTTCAGCTTTTGTTGACAAAGAAGATGGTTATGCCTATTACTATCCTTCAGATTGGACA
rJMSF015P21+ TTTTCAGCTTTTGTTGACAAAGAAGATGGTTATGCCTATTACTATCCTTCAGATTGGACA
rJMFF032B16+ TTTTCAGCTTTTGTTGACAAAGAAGATGGTTATGCCTATTACTATCCTTCAGATTGGACA
rJMFF017J06+ TTTTCAGCTTTTGTTGACAAAGAAGATGGTTATGCCTATTACTATCCTTCAGATTGGACA
____________________________________________________________
consensus TTTTCAGCTTTTGTTGACAAAGAAGATGGTTATGCCTATTACTATCCTTCAGATTGGACA
. : . : . : . : . : . :
JMSF052E20- GACTTTGATTTTAGAGGGCATGATTCTGCATTTAAGGACAGACATTTACAGTTGCAAAAT
rJMSF052E20+ GACTTTGATTTTAGAGGGCATGATTCTGCATTTAAGGACAGACATTTACAGTTGCAAAAT
rJMSF015P21+ GACTTTGATTTTAGAGGGCATGATTCTGCATTTAAGGACAGACATTTACAGTTGCAAAAT
rJMFF032B16+ GACTTTGATTTTAGAGGGCATGATTCTGCATTTAAGGACAGACATTTACAGTTGCAAAAT
rJMFF017J06+ GACTTTGATTTTAGAGGGCATGATTCTGCATTTAAGGACAGACATTTACAGTTGCAAAAT
____________________________________________________________
consensus GACTTTGATTTTAGAGGGCATGATTCTGCATTTAAGGACAGACATTTACAGTTGCAAAAT
. : . : . : . : . : . :
JMSF052E20- GTTAGGGTGAATTTTATACCAACTGAGCAGTCAGACATCCATGATTTGGGTCCAATACAA
rJMSF052E20+ GTTAGGGTGAATTTTATACCAACTGAGCAGTCAGACATCCATGATTTGGGTCCAATACAA
rJMSF015P21+ GTTAGGGTGAATTTTATACCAACTGAGCAGTCAGACATCCATGATTTGGGTCCAATACAA
rJMFF032B16+ GTTAGGGTGAATTTTATACCAACTGAGCAGTCAGACATCCATGATTTGGGTCCAATACAA
rJMFF017J06+ GTTAGGGTGAATTTTATACCAACTGAGCAGTCAGACATCCATGATTTGGGTCCAATACAA
____________________________________________________________
consensus GTTAGGGTGAATTTTATACCAACTGAGCAGTCAGACATCCATGATTTGGGTCCAATACAA
. : . : . : . : . : . :
JMSF052E20- GAGACAGTGTACAGGCTAGTTACACATGTTTATGCAGCTCCAAGTCAAGTAGCAACCATA
rJMSF052E20+ GAGACAGTGTACAGGCTAGTTACACATGTTTATGCAGCTCCAAGTCAAGTAGCAACCATA
rJMSF015P21+ GAGACAGTGTACAGGCTAGTTACACATGTTTATGCAGCTCCAAGTCAAGTAGCAACCATA
rJMFF032B16+ GAGACAGTGTACAGGCTAGTTACACATGTTTATGCAGCTCCAAGTCAAGTAGCAACCATA
rJMFF017J06+ GAGACAGTGTACAGGCTAGTTACACATGTTTATGCAGCTCCAAGTCAAGTAGCAACCATA
____________________________________________________________
consensus GAGACAGTGTACAGGCTAGTTACACATGTTTATGCAGCTCCAAGTCAAGTAGCAACCATA
. : . : . : . : . : . :
JMSF052E20- ATGGATGTTCAGGAAAAAACTATAGAAGGCAAAAACTACTGCACCTTTGAATATGTACTC
rJMSF052E20+ ATGGATGTTCAGGAAAAAACTATAGAAGGCAAAAACTACTGCACCTTTGAATATGTACTC
rJMSF015P21+ ATGGATGTTCAGGAAAAAACTATAGAAGGCAAAAACTACTGCACCTTTGAATATGTACTC
rJMFF032B16+ ATGGATGTTCAGGAAAAAACTATAGAAGGCAAAAACTACTGCACCTTTGAATATGTACTC
rJMFF017J06+ ATGGATGTTCAGGAAAAAACTATAGAAGGCAAAAACTACTGCACCTTTGAATATGTACTC
____________________________________________________________
consensus ATGGATGTTCAGGAAAAAACTATAGAAGGCAAAAACTACTGCACCTTTGAATATGTACTC
. : . : . : . : . : . :
JMSF052E20- ACTTCTGTAAACTTTTCAAGAGCCGCATTTGCAACCATAGCTGTTG
rJMSF052E20+ ACTTCTGTAAACTTTTCAAGAGCCGCATTTGCAACCATAGCTGTTGGAAATGGGAGATTC
rJMSF015P21+ ACTTCTGTAAACTTTTCAAGAGCCGCATTTGCAACCATAGCTGTTGGAAATGGGAGATTC
rJMFF032B16+ ACTTCTGTAAACTTTTCAAGAGCCGCATTTGCAACCATAGCTGTTGGAAATGGGAGATTC
rJMFF017J06+ ACTTCTGTAAACTTTTCAAGAGCCGCATTTGCAACCATAGCTGTTGGAAATGGGAGATTC
____________________________________________________________
consensus ACTTCTGTAAACTTTTCAAGAGCCGCATTTGCAACCATAGCTGTTGGAAATGGGAGATTC
. : . : . : . : . : . :
rJMSF052E20+ TACACCTTGGTAGTTGGAGCAAATGAAAGGAGATGGAGAAGGTTTAGAAACAAGCTTAAA
rJMSF015P21+ TACACCTTGGTAGTTGGAGCAAATGAAAGGAGATGGAGAAGGTTTAGAAACAAGCTTAAA
rJMFF032B16+ TACACCTTGGTAGTTGGAGCAAATGAAAGGAGATGGAGAAGGTTTAGAAACAAGCTTAAA
rJMFF017J06+ TACACCTTGGTAGTTGGAGCAAATGAAAGGAGATGGAGAAGGTTTAGAAACAAGCTTAAA
____________________________________________________________
consensus TACACCTTGGTAGTTGGAGCAAATGAAAGGAGATGGAGAAGGTTTAGAAACAAGCTTAAA
. : . : . : . : . : . :
rJMSF052E20+ GTTGTGGCAGACTCTTTCAAGTTGCTAGACATCTAAACTTCTCATTGTAATGGATTCTCT
rJMSF015P21+ GTTGTGGCAGACTCTTTCAAGTTGCTAGACATCTAAACTTCTCATTGTAATGGATTCTCT
rJMFF032B16+ GTTGTGGCAGACTCTTTCAAGTTGCTAGACATCTAAACTTCTCATTGTAATGGATTCTCT
rJMFF017J06+ GTTGTGGCAGACTCTTTCAAGTTGCTAGACATCTAAACTTCTCATTGTAATGGATTCTCT
____________________________________________________________
consensus GTTGTGGCAGACTCTTTCAAGTTGCTAGACATCTAAACTTCTCATTGTAATGGATTCTCT
. : . : . : . : . : . :
rJMSF052E20+ TACCAATTTTCTGGCAGAGAACAACAACCTGTATATATGTATTATAACTCCCAACATTCA
rJMSF015P21+ TACCAATTTTCTGGCAGAGAACAACAACCTGTATATATGTATTATAACTCCCAACATTCA
rJMFF032B16+ TACCAATTTTCTGGCAGAGAACAACAACCTGTATATATGTATTATAACTCCCAACATTCA
rJMFF017J06+ TACCAATTTTCTGGCAGAGAACAACAACCTGTATATATGTATTATAACTCCCAACATTCA
____________________________________________________________
consensus TACCAATTTTCTGGCAGAGAACAACAACCTGTATATATGTATTATAACTCCCAACATTCA
. : . : . : . : . : . :
rJMSF052E20+ ATATATGTAA
rJMSF015P21+ ATATATGTAACTGAGATGAATAACAGGGGTGGCAGGAATGAACAACATTTTATGCAGGAA
rJMFF032B16+ ATATATGTAACTGAGATGAATAACAGGGGTGGCAGGAATGAACAACATTTTATGCAGGAA
rJMFF017J06+ ATATATGTAACTGAGATGAATAACAGGGGTGGCAGGAATGAACAACATTTTATGCAGGAA
____________________________________________________________
consensus ATATATGTAACTGAGATGAATAACAGGGGTGGCAGGAATGAACAACATTTTATGCAGGAA
. : . : . : . : . : . :
rJMSF015P21+ ACCTGTATATATGTATTAATGTATGTAACTGAGA
rJMFF032B16+ ACCTGTATATATGTATTAATGTATGTAACTGAGATGAATAACAGGGCAAGAA
rJMFF017J06+ ACCTGTATATATGTATTAATGTATGTAACTGAGATGAATAACAGGGCAAGAAGAAGAACA
____________________________________________________________
consensus ACCTGTATATATGTATTAATGTATGTAACTGAGATGAATAACAGGGCAAGAAGAAGAACA