Contig 009673:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016O24Sequence622010199 (2)emb|CDP19036.1|5e-54unnamed protein product [Coffea canephora]706009673 (3)
JMFN012A22Sequence614009673 (3)emb|CAM32009.1|7e-15YA4 [Petunia x hybrida]
JMSF021G08Sequence740009673 (3)ref|XP_004228516.1|2e-25PREDICTED: nuclear transcription factor Y subunit A-1 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF021G08+                                CGTAGAAGAGAGTCACGTGCTAAAGCTGAACTTCAGAA
                      ____________________________________________________________
consensus                                   CGTAGAAGAGAGTCACGTGCTAAAGCTGAACTTCAGAA
 
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JMFN012A22-                                GCCATACCTTCATGAATCTAGACATCAGCATGCTCTGAG
rJMSF021G08+          GAAGCTCATAAAAGTTAGAAAGCCATACCTTCATGAATCTAGACATCAGCATGCTCTGAG
rJMFF016O24+                               GCCATACCTTCATGAATCTAGACATCAGCATNCTCTGAG
                      ____________________________________________________________
consensus             GAAGCTCATAAAAGTTAGAAAGCCATACCTTCATGAATCTAGACATCAGCATGCTCTGAG
 
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JMFN012A22-           GAGAGCTCGGGG-TTCTGGAGGGCGATTCGTGAAGAAATCTGATT-CCAATGCTCCAAAG
rJMSF021G08+          GAGAGCTCGGGG-TTCTGGAGGGCGATTCGTGAAGAAATCTGATT-CCAATGCTCCAAAG
rJMFF016O24+          GAGAGCTCGGGGNTTCTGGAGGNCGATTNGTGAAGAAATCTGATTCCCAATGCTCCAAAG
                      ____________________________________________________________
consensus             GAGAGCTCGGGG-TTCTGGAGGGCGATTCGTGAAGAAATCTGATT-CCAATGCTCCAAAG
 
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JMFN012A22-           CAGACGGGCTCCGGTGGATCTCTCTCCCCCCGATCCCTTACACTCCCTGGTCCCGAATCT
rJMSF021G08+          CAGACGGGCTCCGGTGGATCTCTCTCCCCCCGATCCCTTACACTCCCTGGTCCCGAATCT
rJMFF016O24+          CAGACGGGCTCCGGTGGATCTCTCTCCCCCCGATCCCTTACACTCCCTGGTCCCGAATCT
                      ____________________________________________________________
consensus             CAGACGGGCTCCGGTGGATCTCTCTCCCCCCGATCCCTTACACTCCCTGGTCCCGAATCT
 
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JMFN012A22-           TTCCCGTCTGGCGCTTCAAATAACTGTCAAGAAGCAGTACCTAAGCCTCATCTTCATCAG
rJMSF021G08+          TTCCCGTCTGGCGCTTCAAATAACTGTCAAGAAGCAGTACCTAAGCCTCATCTTCATCAG
rJMFF016O24+          TTCCCGTCTGGCGCTTCAAATAACTGTCAAGAAGCAGTACCTAAGCCTCATCTTCATCAG
                      ____________________________________________________________
consensus             TTCCCGTCTGGCGCTTCAAATAACTGTCAAGAAGCAGTACCTAAGCCTCATCTTCATCAG
 
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JMFN012A22-           TACATAAACAGCGGGGGCAGCTATGGAAGCCGATGCTGCTCTCAGGAATCATTATATCAC
rJMSF021G08+          TACATAAACAGCGGGGGCAGCTATGGAAGCCGATGCTGCTCTCAGGAATCATTATATCAC
rJMFF016O24+          TACATAAACAGCGGGGGCAGCTATGGAAGCCGATGCTGCTCTCAGGAATCATTATATCAC
                      ____________________________________________________________
consensus             TACATAAACAGCGGGGGCAGCTATGGAAGCCGATGCTGCTCTCAGGAATCATTATATCAC
 
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JMFN012A22-           GTGCATTCTGCCGAGTCCTCGGGAGGAGGCTCCACACGCAAGTAACAGTGAAGCACCTCT
rJMSF021G08+          GTGCATTCTGCCGAGTCCTCGGGAGGAGGCTCCACACGCAAGTAACAGTGAAGCACCTCT
rJMFF016O24+          GTGCATTCTGCCGAGTCCTCGGGAGGAGGCTCCACACGCAAGTAACAGTGAAGCACCTCT
                      ____________________________________________________________
consensus             GTGCATTCTGCCGAGTCCTCGGGAGGAGGCTCCACACGCAAGTAACAGTGAAGCACCTCT
 
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JMFN012A22-           CTACCCCAGCTGTCGCCACGCAATTAGCTTCCGGTGAAATGTAGGAAGATCGAATACGAT
rJMSF021G08+          CTACCCCAGCTGTCGCCACGCAATTAGCTTCCGGTGAAATGTAGGAAGATCGAATACGAT
rJMFF016O24+          CTACCCCAGCTGTCGCCACGCAATTAGCTTCCGGTGAAATGTAGGAAGATCGAATACGAT
                      ____________________________________________________________
consensus             CTACCCCAGCTGTCGCCACGCAATTAGCTTCCGGTGAAATGTAGGAAGATCGAATACGAT
 
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JMFN012A22-           CCAACGAGGAAGCCATGTATGGATCTCGGGCGTTCATGCTGGGCGGCAATTCATTCCTGG
rJMSF021G08+          CCAACGAGGAAGCCATGTATGGATCTCGGGCGTTCATGCTGGGCGGCAATTCATTCCTGG
rJMFF016O24+          CCAACGAGGAAGCCATGTATGGATCTCGGGCGTTCATGCTGGGCGGCAATTCATTCCTGG
                      ____________________________________________________________
consensus             CCAACGAGGAAGCCATGTATGGATCTCGGGCGTTCATGCTGGGCGGCAATTCATTCCTGG
 
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JMFN012A22-           CTCATGAAATCTTTAGCTCTTCTGTTTTGTTGTTCGAAGTAATGGAAGTAGGTGTAGGAT
rJMSF021G08+          CTCATGAAATCTTTAGCTCTTCTGTTTTGTTGTTCGAAGTAATGGAAGTAGGTGTAGGAT
rJMFF016O24+          CTCATGAAATCTTTAGCTCTTCTGTTTTGTTGTTCGAAGTAATGGAAGTAGGTGTAGGAT
                      ____________________________________________________________
consensus             CTCATGAAATCTTTAGCTCTTCTGTTTTGTTGTTCGAAGTAATGGAAGTAGGTGTAGGAT
 
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JMFN012A22-           TATGAAGCATGTATGTGTTTTGTGAGGTTAATAGTTAATGGATTGTTTATCAGTTAGGAG
rJMSF021G08+          TATGAAGCATGTATGTGTTTTGTGAGGTTAATAGTTAATGGATTGTTTATCAGTTAGGAG
rJMFF016O24+          TATGAAGCATGTATGTGTTTTGTGAGGTTAATAGTTAATGGATTGTTTATCAGTTAGGAG
                      ____________________________________________________________
consensus             TATGAAGCATGTATGTGTTTTGTGAGGTTAATAGTTAATGGATTGTTTATCAGTTAGGAG
 
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JMFN012A22-           GATCTGAAGTATAGATAGTGTGATGTAGCAAATGGTT                       
rJMSF021G08+          GATCTGAAGTATAGATAGTGTGATGTAGCAAATGGTTGTGATTTTCCTTTCTGGTTTTGT
rJMFF016O24+          GATCTGAAGTATAGATAGTGTGATGTAGCAAATGGTTGTGATTTTCCTTTCTGGTTTTGT
                      ____________________________________________________________
consensus             GATCTGAAGTATAGATAGTGTGATGTAGCAAATGGTTGTGATTTTCCTTTCTGGTTTTGT
 
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rJMSF021G08+          GGGACTACTGGGATTTGGTCTTTGTTTACCATAAAACTTT                    
rJMFF016O24+          GGGACTACTGGGATTTGGTCTTNGTNTACCATAAAACTTTTCTTNNTTATATNCATAATA
                      ____________________________________________________________
consensus             GGGACTACTGGGATTTGGTCTTTGTTTACCATAAAACTTTTCTTNNTTATATNCATAATA