Contig 009672:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016I05Sequence564009672 (2)ref|XP_009782728.1|4e-96PREDICTED: cyclin-U2-2-like [Nicotiana sylvestris]797009672 (2)ref|XP_009782728.1|2e-119PREDICTED: cyclin-U2-2-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016I05- TTATAACCAAAATTGTT
                      ____________________________________________________________
consensus TTATAACCAAAATTGTT
 
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rJMFF016I05- ATTTCTATACAATTTTTTTGAGAAATGAGAGAAACCCGCATCTACTATTCAAGGGTCGGG
                      ____________________________________________________________
consensus ATTTCTATACAATTTTTTTGAGAAATGAGAGAAACCCGCATCTACTATTCAAGGGTCGGG
 
. : . : . : . : . : . :
rJMFF016I05- CATACACCAGATGAATATTCTATGTTTTAATTTCTACAGCAATAAGCTGGTAACCTGGGT
                      ____________________________________________________________
consensus CATACACCAGATGAATATTCTATGTTTTAATTTCTACAGCAATAAGCTGGTAACCTGGGT
 
. : . : . : . : . : . :
rJMFF016I05- GAATGTTGTATCTTCTCTTTGTTTTGATTTGATATCTTGAGCACATCTCAAAGTCCTCTC
                      ____________________________________________________________
consensus GAATGTTGTATCTTCTCTTTGTTTTGATTTGATATCTTGAGCACATCTCAAAGTCCTCTC
 
. : . : . : . : . : . :
JMFF016I05+ CAAGATGGCAGCAGTAGCTATGGAA
rJMFF016I05- AATTTGGTAGCCTCCTCCAATGCCCACTTCTCTTTCAAGATGGCAGCAGTAGCTATGGAA
                      ____________________________________________________________
consensus AATTTGGTAGCCTCCTCCAATGCCCACTTCTCTTTCAAGATGGCAGCAGTAGCTATGGAA
 
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JMFF016I05+ TACACTCACATTCACATGCAATTTGAATCTCATCAAGAACAAAAACTCTACCTCCAATTT
rJMFF016I05- TACACTCACATTCACATGCAATTTGAATCTCATCAAGAACAAAAACTCTACCTCCAATTT
                      ____________________________________________________________
consensus TACACTCACATTCACATGCAATTTGAATCTCATCAAGAACAAAAACTCTACCTCCAATTT
 
. : . : . : . : . : . :
JMFF016I05+ GTTCATTTCCATTGTTGTCAATCCACCCACTCTTGCAAAGTATGAATTCCTATAATTCAT
rJMFF016I05- GTTCATTTCCATTGTTGTCAATCCACCCACTCTTGCAAAGTATGAATTCCTATAATTCAT
                      ____________________________________________________________
consensus GTTCATTTCCATTGTTGTCAATCCACCCACTCTTGCAAAGTATGAATTCCTATAATTCAT
 
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JMFF016I05+ ATCTTCAACATACTTAGAAGCCACCATGATGGTAGTGATGAGAAGCCTGTGGACATTTGT
rJMFF016I05- ATCTTCAACATACTTAGAAGCCACCATGATGGTAGTGATGAGAAGCCTGTGGACATTTGT
                      ____________________________________________________________
consensus ATCTTCAACATACTTAGAAGCCACCATGATGGTAGTGATGAGAAGCCTGTGGACATTTGT
 
. : . : . : . : . : . :
JMFF016I05+ GGGACCAATTCTGAACTGGGGATGGAGCTGGCAGAATCTGTCGAGGTAAACATAGGCGAC
rJMFF016I05- GGGACCAATTCTGAACTGGGGATGGAGCTGGCAGAATCTGTCGAGGTAAACATAGGCGAC
                      ____________________________________________________________
consensus GGGACCAATTCTGAACTGGGGATGGAGCTGGCAGAATCTGTCGAGGTAAACATAGGCGAC
 
. : . : . : . : . : . :
JMFF016I05+ AACATAAACCGACGGTCCGGCTCCGGTGTACCGGAAAACCCTCTCCAAGTACGACTCAAT
rJMFF016I05- AACATAAACCGACGGTCCGGCTCCGGTGTACCGGAAAACCCTCTCCAAGTACGACTCAAT
                      ____________________________________________________________
consensus AACATAAACCGACGGTCCGGCTCCGGTGTACCGGAAAACCCTCTCCAAGTACGACTCAAT
 
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JMFF016I05+ CGTCATGTCCGGCGCCTCATTGCACTCGAAAACCTTAGTTGATCCCACATTAATATCCAT
rJMFF016I05- CGTCATGTCCGGCGCCTCATTGCACTCGAAAACCTTAGTTGATCCCACATTAATATCCAT
                      ____________________________________________________________
consensus CGTCATGTCCGGCGCCTCATTGCACTCGAAAACCTTAGTTGATCCCACATTAATATCCAT
 
. : . : . : . : . : . :
JMFF016I05+ AGCTCCTCTGAAGTTCCTGGCAATTCACTGGTTCCTCGTCACCGTCCTCCCAATCAGAGA
rJMFF016I05- AGCTCCTCTGAAGTTCCTGGCAATTCACTGGTTCCTCGTCACCGTCCTCCCAATCAGAGA
                      ____________________________________________________________
consensus AGCTCCTCTGAAGTTCCTGGCAATTCACTGGTTCCTCGTCACCGTCCTCCCAATCAGAGA
 
. : . : . : . : . : . :
JMFF016I05+ AGCAAGAACTGAGATCACCAGTGGAGTGCTCGATTGTTCCTGGTATGCGTACAAGTAGAG
rJMFF016I05- AGCAAGAACTGAGATCACCAGTGGAGTGCTCGATTGTTCCTGGTATGCGTACAAGTAGAG
                      ____________________________________________________________
consensus AGCAAGAACTGAGATCACCAGTGGAGTGCTCGATTGTTCCTGGTATGCGTACAAGTAGAG
 
. : . : . : . : . : . :
JMFF016I05+ ATCATCCCTAAGCTTTCTTGGAGATATTATTGAAGCTTCTTCTGTAATTACCACCGCCA
rJMFF016I05- ATCATCCCTAAGCTTTCTTGGAGATATTATTGAAGCTTCTTCTGTAATTACCACCGCCAT
                      ____________________________________________________________
consensus ATCATCCCTAAGCTTTCTTGGAGATATTATTGAAGCTTCTTCTGTAATTACCACCGCCAT