clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF006L10 | Sequence | 498 | 000700 (5) | ref|XP_004234956.1| | 1e-75 | PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum] | 813 | 009663 (6) | ref|XP_009619235.1| | 3e-85 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 |
JMFF015B24 | Sequence | 553 | 000700 (5) | ref|XP_004234956.1| | 2e-88 | PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum] | 740 | 009663 (6) | emb|CDP05074.1| | 1e-50 | unnamed protein product [Coffea canephora] |
JMFF031I05 | Sequence | 521 | 000700 (5) | ref|XP_009757142.1| | 3e-77 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana sylvestris] ref|XP_009757143. | 174 | 009663 (6) | |||
JMFF037G09 | Sequence | 684 | 009663 (6) | emb|CDP05074.1| | 7e-49 | unnamed protein product [Coffea canephora] | |||||
JMSF017H24 | Sequence | 237 | 000700 (5) | ref|XP_009619235.1| | 3e-14 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 | 777 | 009663 (6) | ref|XP_009619235.1| | 3e-70 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 |
JMSF030K14 | Sequence | 639 | 000700 (5) | ref|XP_004234956.1| | 5e-102 | PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum] | 725 | 009663 (6) | ref|XP_009619235.1| | 8e-75 | PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961 |
This contig is upended
. : . : . : . : . : . :
rJMFF006L10+ GTACAAGCAGAGTCAGAGAGTGATGATGAAGAGCAGCAGATTTATAACCCCTTG
____________________________________________________________
consensus GTACAAGCAGAGTCAGAGAGTGATGATGAAGAGCAGCAGATTTATAACCCCTTG
. : . : . : . : . : . :
rJMSF030K14+ CCGTATTGGTTATATAAACTTCATGGG
rJMFF006L10+ AAGTTGCCCATGGGCTGGGATGGGAAACCTATTCCGTATTGGTTATATAAACTTCATGGG
rJMSF017H24+ CCGTATTGGTTATATNAACTTCATGGG
____________________________________________________________
consensus AAGTTGCCCATGGGCTGGGATGGGAAACCTATTCCGTATTGGTTATATAAACTTCATGGG
. : . : . : . : . : . :
rJMSF030K14+ CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
rJMFF006L10+ CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
rJMSF017H24+ CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
rJMFF037G09+ GGTCGTAGAGCA
rJMFF015B24+ GTTACTGGGGTCGTAGAGCA
____________________________________________________________
consensus CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
. : . : . : . : . : . :
rJMSF030K14+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMFF006L10+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMSF017H24+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMFF037G09+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMFF015B24+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
____________________________________________________________
consensus TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
. : . : . : . : . : . :
rJMSF030K14+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMFF006L10+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMSF017H24+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMFF037G09+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMFF015B24+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
____________________________________________________________
consensus AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
. : . : . : . : . : . :
rJMSF030K14+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMFF006L10+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMSF017H24+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMFF037G09+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMFF015B24+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
____________________________________________________________
consensus ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
. : . : . : . : . : . :
rJMSF030K14+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMFF006L10+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMSF017H24+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMFF037G09+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMFF015B24+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
____________________________________________________________
consensus CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
. : . : . : . : . : . :
rJMFF031I05+ ACTCGGCAAGGCTT
rJMSF030K14+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMFF006L10+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMSF017H24+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMFF037G09+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMFF015B24+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
____________________________________________________________
consensus TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
. : . : . : . : . : . :
rJMFF031I05+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMSF030K14+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMFF006L10+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMSF017H24+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMFF037G09+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMFF015B24+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
____________________________________________________________
consensus CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
. : . : . : . : . : . :
rJMFF031I05+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMSF030K14+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMFF006L10+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMSF017H24+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMFF037G09+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMFF015B24+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
____________________________________________________________
consensus ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
. : . : . : . : . : . :
rJMFF031I05+ TGGAATGTTNCCACGTATCTTTTAACAGCTTTTCCAACA
rJMSF030K14+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMFF006L10+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMSF017H24+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMFF037G09+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMFF015B24+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
____________________________________________________________
consensus TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
. : . : . : . : . : . :
rJMSF030K14+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMFF006L10+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMSF017H24+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMFF037G09+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMFF015B24+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
____________________________________________________________
consensus GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
. : . : . : . : . : . :
rJMSF030K14+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMFF006L10+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMSF017H24+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMFF037G09+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMFF015B24+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
____________________________________________________________
consensus ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
. : . : . : . : . : . :
rJMSF030K14+ TGTTAGATTATGATGTATGT
rJMFF006L10+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGT
rJMSF017H24+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
rJMFF037G09+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
rJMFF015B24+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
____________________________________________________________
consensus TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
. : . : . : . : . : . :
rJMSF017H24+ AATTGTACTTTT
rJMFF037G09+ AATTGTACTTTT
rJMFF015B24+ AATTGTACTTTTTGGCTTATTAATTATGAAGGCGCTTGGCTGCTTTGCTGTTAAAAAANA
____________________________________________________________
consensus AATTGTACTTTTTGGCTTATTAATTATGAAGGCGCTTGGCTGCTTTGCTGTTAAAAAANA