Contig 009663:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006L10Sequence498000700 (5)ref|XP_004234956.1|1e-75PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum]813009663 (6)ref|XP_009619235.1|3e-85PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961
JMFF015B24Sequence553000700 (5)ref|XP_004234956.1|2e-88PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum]740009663 (6)emb|CDP05074.1|1e-50unnamed protein product [Coffea canephora]
JMFF031I05Sequence521000700 (5)ref|XP_009757142.1|3e-77PREDICTED: splicing factor 3A subunit 3 [Nicotiana sylvestris] ref|XP_009757143.174009663 (6)
JMFF037G09Sequence684009663 (6)emb|CDP05074.1|7e-49unnamed protein product [Coffea canephora]
JMSF017H24Sequence237000700 (5)ref|XP_009619235.1|3e-14PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961777009663 (6)ref|XP_009619235.1|3e-70PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961
JMSF030K14Sequence639000700 (5)ref|XP_004234956.1|5e-102PREDICTED: splicing factor 3A subunit 3 [Solanum lycopersicum]725009663 (6)ref|XP_009619235.1|8e-75PREDICTED: splicing factor 3A subunit 3 [Nicotiana tomentosiformis] ref|XP_00961

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF006L10+ GTACAAGCAGAGTCAGAGAGTGATGATGAAGAGCAGCAGATTTATAACCCCTTG
                      ____________________________________________________________
consensus GTACAAGCAGAGTCAGAGAGTGATGATGAAGAGCAGCAGATTTATAACCCCTTG
 
. : . : . : . : . : . :
rJMSF030K14+ CCGTATTGGTTATATAAACTTCATGGG
rJMFF006L10+ AAGTTGCCCATGGGCTGGGATGGGAAACCTATTCCGTATTGGTTATATAAACTTCATGGG
rJMSF017H24+ CCGTATTGGTTATATNAACTTCATGGG
                      ____________________________________________________________
consensus AAGTTGCCCATGGGCTGGGATGGGAAACCTATTCCGTATTGGTTATATAAACTTCATGGG
 
. : . : . : . : . : . :
rJMSF030K14+ CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
rJMFF006L10+ CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
rJMSF017H24+ CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
rJMFF037G09+ GGTCGTAGAGCA
rJMFF015B24+ GTTACTGGGGTCGTAGAGCA
                      ____________________________________________________________
consensus CTTGGTCAGGAATTCAAGTGTGAGATCTGTGGGAACCACAGTTACTGGGGTCGTAGAGCA
 
. : . : . : . : . : . :
rJMSF030K14+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMFF006L10+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMSF017H24+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMFF037G09+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
rJMFF015B24+ TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
                      ____________________________________________________________
consensus TATGAACGACATTTCAAGGAATGGAGGCATCAACATGGGATGCGATGTCTTGGTATCCCG
 
. : . : . : . : . : . :
rJMSF030K14+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMFF006L10+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMSF017H24+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMFF037G09+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
rJMFF015B24+ AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
                      ____________________________________________________________
consensus AATACCAAGAACTTCAATGAGATTACATCTATTGAGGAAGCAAAGCAACTTTGGGAGAGA
 
. : . : . : . : . : . :
rJMSF030K14+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMFF006L10+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMSF017H24+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMFF037G09+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
rJMFF015B24+ ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
                      ____________________________________________________________
consensus ATCCAGGAGAGACAAGGTCTTAACAAATGGCGCCCAGATCTTGAGGAAGAGTATGAAGAT
 
. : . : . : . : . : . :
rJMSF030K14+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMFF006L10+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMSF017H24+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMFF037G09+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
rJMFF015B24+ CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
                      ____________________________________________________________
consensus CAAGAAGGCAATATCTATAACAAAAAGACATACACAGATCTGCAACGGCAGGGTTTGATT
 
. : . : . : . : . : . :
rJMFF031I05+ ACTCGGCAAGGCTT
rJMSF030K14+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMFF006L10+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMSF017H24+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMFF037G09+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
rJMFF015B24+ TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
                      ____________________________________________________________
consensus TAGAGGTCAGCTTTTACCAGCCGTGTTTATGTGGGAGATCTTCTAAACTCGGCAAGGCTT
 
. : . : . : . : . : . :
rJMFF031I05+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMSF030K14+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMFF006L10+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMSF017H24+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMFF037G09+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
rJMFF015B24+ CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
                      ____________________________________________________________
consensus CTTAGGCATCATGTTTGGTGCAAGGAAATTGTGAGGGAAGCGGAAAGTTTGTAGCGTGTA
 
. : . : . : . : . : . :
rJMFF031I05+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMSF030K14+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMFF006L10+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMSF017H24+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMFF037G09+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
rJMFF015B24+ ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
                      ____________________________________________________________
consensus ATAGAGGGATCCCCTAGAACACCAGAGGAGGCAGTCTATTATACCAGAAGAGATGGATGA
 
. : . : . : . : . : . :
rJMFF031I05+ TGGAATGTTNCCACGTATCTTTTAACAGCTTTTCCAACA
rJMSF030K14+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMFF006L10+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMSF017H24+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMFF037G09+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
rJMFF015B24+ TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
                      ____________________________________________________________
consensus TGGAATGTTTCCATGTATCTTTTAACAGCTTTTCCAACATTGGGATCCATTCTAACACCA
 
. : . : . : . : . : . :
rJMSF030K14+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMFF006L10+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMSF017H24+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMFF037G09+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
rJMFF015B24+ GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
                      ____________________________________________________________
consensus GATATAGTCATATAGACTTCTTGAAGGGGGAAAAAAAATCCTAAACGGAATTTGGTATTT
 
. : . : . : . : . : . :
rJMSF030K14+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMFF006L10+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMSF017H24+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMFF037G09+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
rJMFF015B24+ ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
                      ____________________________________________________________
consensus ATGATTCTACAATTTTCATGTTTGCTTTTGATGTATTTGCTTTGCTGCAGATCTTGGTTC
 
. : . : . : . : . : . :
rJMSF030K14+ TGTTAGATTATGATGTATGT
rJMFF006L10+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGT
rJMSF017H24+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
rJMFF037G09+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
rJMFF015B24+ TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
                      ____________________________________________________________
consensus TGTTAGATTATGATGTATGTTGGGAGAAGATTATGATGTCTGTATAATTAATGTCTTGGC
 
. : . : . : . : . : . :
rJMSF017H24+ AATTGTACTTTT
rJMFF037G09+ AATTGTACTTTT
rJMFF015B24+ AATTGTACTTTTTGGCTTATTAATTATGAAGGCGCTTGGCTGCTTTGCTGTTAAAAAANA
                      ____________________________________________________________
consensus AATTGTACTTTTTGGCTTATTAATTATGAAGGCGCTTGGCTGCTTTGCTGTTAAAAAANA