Contig 009657:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+                                         TCTTCCAATATGGAGACGAGTCTTGAGGC
                      ____________________________________________________________
consensus                                            TCTTCCAATATGGAGACGAGTCTTGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          GGTTGTATATCATGATTCTCGGGTTCCTGTCATATCTCGCCTTAGAAATGCTCTAATGCT
                      ____________________________________________________________
consensus             GGTTGTATATCATGATTCTCGGGTTCCTGTCATATCTCGCCTTAGAAATGCTCTAATGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          CTACCGGTAGTTGTCATGTGGAGACTTCTTTGATTAACCAAGGAAGAGAGCTATCATATT
                      ____________________________________________________________
consensus             CTACCGGTAGTTGTCATGTGGAGACTTCTTTGATTAACCAAGGAAGAGAGCTATCATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          GCCTTTACTTTTCACATATTTTCCTCTTATTCCCAGGGGAGAAAGATTGATTCCTCACTG
                      ____________________________________________________________
consensus             GCCTTTACTTTTCACATATTTTCCTCTTATTCCCAGGGGAGAAAGATTGATTCCTCACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          ATGAAATGATGATATTTCTTTTGTTCCGTGTGGGCAGTAATGAAAGATATTTGGCGTTTC
                      ____________________________________________________________
consensus             ATGAAATGATGATATTTCTTTTGTTCCGTGTGGGCAGTAATGAAAGATATTTGGCGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          CCCTTGTTGAGCCTGTAATATATAAAATGTAAATGTGCAGTATCACTATAGAGTGGTGGT
                      ____________________________________________________________
consensus             CCCTTGTTGAGCCTGTAATATATAAAATGTAAATGTGCAGTATCACTATAGAGTGGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          TTTTGCTGATTCTATTAAAGCTTTCTTGCATACCATTTTTTGCTCTCACGGATTGAATTT
                      ____________________________________________________________
consensus             TTTTGCTGATTCTATTAAAGCTTTCTTGCATACCATTTTTTGCTCTCACGGATTGAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          TCTTCACAGAGATTGAAGGCAGAAGTGGAGAGGAGGAGGGTGCACCATTTCGGCAGCCAT
                      ____________________________________________________________
consensus             TCTTCACAGAGATTGAAGGCAGAAGTGGAGAGGAGGAGGGTGCACCATTTCGGCAGCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          GAAAAGCGGGATGATGATGGTGACAGCCATGAAAGGC-GGGATGATGATGATGACGACAA
rJMFF046L13+                CGGGATGATGATGGTGACAGCCATGAAAGGCGGGGATGATGATGATGACGACAA
                      ____________________________________________________________
consensus             GAAAAGCGGGATGATGATGGTGACAGCCATGAAAGGCGGGGATGATGATGATGACGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          TGACGATGATGATTTTTTTAAAGGTCTTGATGCAGTGAGAACAGTAATGGCTCCATACTG
rJMFF046L13+          TGACGATGATGA-TTTTTTAAAGGTCTTGATGCAGTGAGAACAGTAATGGCTCCATACTG
                      ____________________________________________________________
consensus             TGACGATGATGATTTTTTTAAAGGTCTTGATGCAGTGAGAACAGTAATGGCTCCATACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          TCTCCAGGAATGGCCAAACTCTCCCAGATCAAAGTGCAGTGATCAGGAGAGATTACTGCT
rJMFF046L13+          TCTCCAGGAATGGCCAAACTCTCCCAGATCAAAGTGCAGTGATCAGGAGAGATTACTGCT
                      ____________________________________________________________
consensus             TCTCCAGGAATGGCCAAACTCTCCCAGATCAAAGTGCAGTGATCAGGAGAGATTACTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          TCATTCTGTCTGTGAAGAACCCCCCATTAATTCGGTTCAAAATAAACAGTGATTTTAGGA
rJMFF046L13+          TCATTCTGTCTGTGAAGAACCCCCCATTAATTCGGTTCAAAATAAACAGTGATTTTAGGA
                      ____________________________________________________________
consensus             TCATTCTGTCTGTGAAGAACCCCCCATTAATTCGGTTCAAAATAAACAGTGATTTTAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036H11+          GTTTTTTTTCCCACACCCATGAAATGTCATTCGAATAAATAGAGATTTAGACTT      
rJMFF046L13+          GTTTTTTTTCCCACACCCATGAAATGTCATTCGAATAAATAGAGATTTAGACTTTGGCCC
                      ____________________________________________________________
consensus             GTTTTTTTTCCCACACCCATGAAATGTCATTCGAATAAATAGAGATTTAGACTTTGGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L13+          GGTTTGGTAAAATAATTAGCTTATAAGTCAATTTTGGTTTATTTGACCACTATTAGCTGT
rJMFF013I05-                                    GTCAATTTTGATTTATTTGATTATTATTAGTTGT
                      ____________________________________________________________
consensus             GGTTTGGTAAAATAATTAGCTTATAAGTCAATTTTGGTTTATTTGATTATTATTAGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L13+          TTAACTTGGTTAAACAATTAATATGAGTGTTTGATTAATTAGCTTTTTGTAACAACTTAT
rJMFF013I05-          TTGACTTGGTTAAATAGTTAATATCAGTGTTTGATTAATAAGCTTTTTGTAATAACTTAT
                      ____________________________________________________________
consensus             TTGACTTGGTTAAATAGTTAATATGAGTGTTTGATTAATTAGCTTTTTGTAATAACTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046L13+          TACTCCAAAATATTAAAATTTAAAAAG                                 
rJMFF013I05-          TGCTCCAAAATATTANAATTCAAAAAGTTGAGAAAAAAAAAAAAAAACNNGCCCGGGNTG
                      ____________________________________________________________
consensus             TGCTCCAAAATATTAAAATTTAAAAAGTTGAGAAAAAAAAAAAAAAACNNGCCCGGGNTG