Contig 009654:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013D13Sequence522009654 (2)gb|EYU20378.1|7e-13hypothetical protein MIMGU_mgv1a012479mg [Erythranthe guttata]663009654 (2)ref|XP_004144996.1|136PREDICTED: uncharacterized protein LOC101205280 [Cucumis sativus] ref|XP_0041538

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-                                      AACTTATTGCGATTTGTAAATCTGCGTCGTCCG
                      ____________________________________________________________
consensus                                        AACTTATTGCGATTTGTAAATCTGCGTCGTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           GTCGTCCCTAACTCCTCGCCGGTCGCCGGTCGCCGGTTGCGACCTCTGCCTTAGCGAAAC
                      ____________________________________________________________
consensus             GTCGTCCCTAACTCCTCGCCGGTCGCCGGTCGCCGGTTGCGACCTCTGCCTTAGCGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           AGCGACGCTGCACTCCACCAATGAAGCGTCTTAGGCAACCAGTCCAACCACAGTTTGATA
                      ____________________________________________________________
consensus             AGCGACGCTGCACTCCACCAATGAAGCGTCTTAGGCAACCAGTCCAACCACAGTTTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           GGTTTCATGGAGACTGGATATGGCATACCAAATAGCCTTCAAGAGAATTTTGAGGATGGC
                      ____________________________________________________________
consensus             GGTTTCATGGAGACTGGATATGGCATACCAAATAGCCTTCAAGAGAATTTTGAGGATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           AAAGACATTAAGATGTGTGAGTTTGAGGAGGGAGAATTGGTGAAGATGTTTTCTAAGACT
                      ____________________________________________________________
consensus             AAAGACATTAAGATGTGTGAGTTTGAGGAGGGAGAATTGGTGAAGATGTTTTCTAAGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           AAATTAGTTTCCAATATAGAATCACAACAAACTAGGTCTGGAACTATTGGAACTGAGACC
                      ____________________________________________________________
consensus             AAATTAGTTTCCAATATAGAATCACAACAAACTAGGTCTGGAACTATTGGAACTGAGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           TTAGTTAATAAAGAGTCTGGCAGGAAGAAGGAGAAGAACAAGGGAAATAAAGGCACCCCA
rJMFF013D13+          TTAGTTAATAAAGAGTCTGGCAGGAAGAAGGAGAAGAACAAGGGAAATAAAGGCACCCCA
                      ____________________________________________________________
consensus             TTAGTTAATAAAGAGTCTGGCAGGAAGAAGGAGAAGAACAAGGGAAATAAAGGCACCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           TTTCCAAGTCTTAATCATATGAACTGCTTTGTTACAAATGTGTGTAGACAATTTGGAGAA
rJMFF013D13+          TTTCCAAGTCTTAATCATATGAACTGCTTTGTTACAAATGTGTGTAGACAATTTGGAGAA
                      ____________________________________________________________
consensus             TTTCCAAGTCTTAATCATATGAACTGCTTTGTTACAAATGTGTGTAGACAATTTGGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           AGAAAATCTTATTTGATATGGGAGGCTGTAGCATGTCTTGGTCTATCAGCTGTCCGTAAT
rJMFF013D13+          AGAAAATCTTATTTGATATGGGAGGCTGTAGCATGTCTTGGTCTATCAGCTGTCCGTAAT
                      ____________________________________________________________
consensus             AGAAAATCTTATTTGATATGGGAGGCTGTAGCATGTCTTGGTCTATCAGCTGTCCGTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013D13-           CTTGTCAAA                                                   
rJMFF013D13+          CTTGTCAAAGAGGCACAAGCAATTCAGGCTTGTGGTGGACAGAAGACTGCTGATGGCCGG
                      ____________________________________________________________
consensus             CTTGTCAAAGAGGCACAAGCAATTCAGGCTTGTGGTGGACAGAAGACTGCTGATGGCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013D13+          TGCTTTAGAACAGGTGGTAGGATATTATGGAACATCATCAAAGCACGTAGGCCAAATGCT
                      ____________________________________________________________
consensus             TGCTTTAGAACAGGTGGTAGGATATTATGGAACATCATCAAAGCACGTAGGCCAAATGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013D13+          TACAAACAGATAATTAAAAGGGGAGTGGAGTTTGAGATGAGTCGCTACAAAGAGTTAATG
                      ____________________________________________________________
consensus             TACAAACAGATAATTAAAAGGGGAGTGGAGTTTGAGATGAGTCGCTACAAAGAGTTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013D13+          GAAAGGGAAGGCCATAGGATTTTGAGAAGCAGCACAAGAAAGTTCCTAAAACATCTGTAA
                      ____________________________________________________________
consensus             GAAAGGGAAGGCCATAGGATTTTGAGAAGCAGCACAAGAAAGTTCCTAAAACATCTGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013D13+          TGGAGCAAGAAGACACATCCCAGAATATCCCTGCAGGCACAGTGACAAATCATATGATAG
                      ____________________________________________________________
consensus             TGGAGCAAGAAGACACATCCCAGAATATCCCTGCAGGCACAGTGACAAATCATATGATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013D13+          TTCAATGCTTTAGATAATGGTTCAAGTTGTGCCAACTTTTGAACCACAACAGTTGTTTAT
                      ____________________________________________________________
consensus             TTCAATGCTTTAGATAATGGTTCAAGTTGTGCCAACTTTTGAACCACAACAGTTGTTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013D13+          AATAGATTACGGATGCCAGTTTCATATGATAGATCTGTTTGAAGAAGAGTGTGCTATAGT
                      ____________________________________________________________
consensus             AATAGATTACGGATGCCAGTTTCATATGATAGATCTGTTTGAAGAAGAGTGTGCTATAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013D13+          TTAATTTTGGACTTATTGTTGAAAGACCTGTCTCTTTACCATCAAACATAATAATAAGTA
                      ____________________________________________________________
consensus             TTAATTTTGGACTTATTGTTGAAAGACCTGTCTCTTTACCATCAAACATAATAATAAGTA