Contig 009653:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+                                                      CCTGGAGGACTTTGGC
                      ____________________________________________________________
consensus                                                         CCTGGAGGACTTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          TGCTGCCGGGGAGGGAAGAAGTAGGCTAGTCTCCGAGATCCACAATGTTTTAGATCTTAT
rJMFF039L22+                  GGGAGGGAAGAAGTAGGCTAGTCTCCGAGATCCACAATGTTTTAGATCTTAT
                      ____________________________________________________________
consensus             TGCTGCCGGGGAGGGAAGAAGTAGGCTAGTCTCCGAGATCCACAATGTTTTAGATCTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          GCGCCGTGGAGAGGGCTTGCGGATTGAGGATGTTATGATTCTTGATCAGTCTGTCCTTTT
rJMFF039L22+          GCGCCGTGGAGAGGGCTTGCGGATTGAGGATGTTATGATTCTTGATCAGTCTGTCCTTTT
                      ____________________________________________________________
consensus             GCGCCGTGGAGAGGGCTTGCGGATTGAGGATGTTATGATTCTTGATCAGTCTGTCCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          TGGGATGCCCGACGCTCATGATCGGCACAGGGACATGCGGCTCGATGTTGATAACATGTC
rJMFF039L22+          TGGGATGCCCGACGCTCATGATCGGCACAGGGACATGCGGCTCGATGTTGATAACATGTC
                      ____________________________________________________________
consensus             TGGGATGCCCGACGCTCATGATCGGCACAGGGACATGCGGCTCGATGTTGATAACATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          ATATGAGGAGTTGCTAGCGCTGGAAGAACGTATTGGAAATGTATGTACTGGTTTGAGTGA
rJMFF039L22+          ATATGAGGAGTTGCTAGCGCTGGAAGAACGTATTGGAAATGTATGTACTGGTTTGAGTGA
                      ____________________________________________________________
consensus             ATATGAGGAGTTGCTAGCGCTGGAAGAACGTATTGGAAATGTATGTACTGGTTTGAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          AGAAGCCATTTCGAGTCGTTTGAAACAACATAAATTTGCGCTCATAAAAGCAGAAAATCC
rJMFF039L22+          AGAAGCCATTTCGAGTCGTTTGAAACAACATAAATTTGCGCTCATAAAAGCAGAAAATCC
                      ____________________________________________________________
consensus             AGAAGCCATTTCGAGTCGTTTGAAACAACATAAATTTGCGCTCATAAAAGCAGAAAATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          CGAAGAAAGAGAACCATGCTGCGTGTGTCAGGAAGAATATAATGATGGAGAAGATCTCGG
rJMFF039L22+          CGAAGAAAGAGAACCATGCTGCGTGTGTCAGGAAGAATATAATGATGGAGAATATCTCGG
                      ____________________________________________________________
consensus             CGAAGAAAGAGAACCATGCTGCGTGTGTCAGGAAGAATATAATGATGGAGAATATCTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          GACATTGGACTGTGGCCATGATTTTCATGCCGACTGCATTAAACAATGGCTTAAGCACAA
rJMFF039L22+          GACATTGGACTGTGGCCATGATTTTCATGCCGACTGCATTAAACAATGGCTTAAGCACAA
                      ____________________________________________________________
consensus             GACATTGGACTGTGGCCATGATTTTCATGCCGACTGCATTAAACAATGGCTTAAGCACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          GAATTTGTGCCCGGTTTGTAAAACAACAGGACTGGCTACCTGAGCGGGGGACGCTCAAAC
rJMFF039L22+          GAATTTGTGCCCGGTTTGTAAAACAACAGGACTGGCTACCTGAGCGGGGGACGCTCAAAC
rJMFF013C16+                                                  TGAGCGGGGGACGCTCAAAT
                      ____________________________________________________________
consensus             GAATTTGTGCCCGGTTTGTAAAACAACAGGACTGGCTACCTGAGCGGGGGACGCTCAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          TACAAGCCTGTCTATACTTCATTCTTTGATTCAAACGAATCAGTCTCGCCCTGCTGGATA
rJMFF039L22+          TACAAGCCTGTCTATACTTCATTCTTTGATTCAAACGAATCAGTCTCGCCCTGCTGGATA
rJMFF013C16+          TACAAGCCTGTCTATACTTCATTCTTNGATTCAAANGAATCAGTCTNGCCCTGNTGGATA
                      ____________________________________________________________
consensus             TACAAGCCTGTCTATACTTCATTCTTTGATTCAAACGAATCAGTCTCGCCCTGCTGGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          AATTCTCTCCACAGAAGATGACACCAGTTAACCGGGTTTCATTGTTTCGGTTGGAGTAAT
rJMFF039L22+          AATTCTCTCCACGGAAGATGACACCAGTTAACCGGGTTTCATTGTTTCGGTTGGAGTAAT
rJMFF013C16+          AATTCTCTCCACGGAAGATGACACCAGTTAACCGGGTTTCATTGTTTCGGTTGGAGTAAT
                      ____________________________________________________________
consensus             AATTCTCTCCACGGAAGATGACACCAGTTAACCGGGTTTCATTGTTTCGGTTGGAGTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          TTGATGGAAGAACAAAAAAGCCTCTTATGTATTTTCTTTCAACTTCATTGTGGTCTCTCC
rJMFF039L22+          TTGATGGAAGAACAAAAAAGCCTCTTATGTATTTTCTTTCAACTTCATTGTGGTCTCTCC
rJMFF013C16+          TTGATGGAAGAACAAAAAAGCCTNTTATGTATTTTCTTTCAACTTCATTGTGGTCTCTCC
                      ____________________________________________________________
consensus             TTGATGGAAGAACAAAAAAGCCTCTTATGTATTTTCTTTCAACTTCATTGTGGTCTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009C09+          TTGTCTAGAAAAAAACAGAAAGTGATCCAAAAATGGCAGATCAC                
rJMFF039L22+          TTGTCTAGAAAAAAACAGAAAGTGATCCAAAAATGGCAGATCACTTTTAGGTGTTAGCCA
rJMFF013C16+          TTGTCTAGAAAAAAACAGAAAGTGATCCAAAAATGGCAGATCACTNTTAGGTGTTAGCCA
                      ____________________________________________________________
consensus             TTGTCTAGAAAAAAACAGAAAGTGATCCAAAAATGGCAGATCACTTTTAGGTGTTAGCCA