| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006M18 | Sequence | 367 | 002440 (5) | ref|XP_011098646.1| | 2e-32 | PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X2 [Sesamum i | 795 | 009649 (6) | ref|XP_010257893.1| | 3e-92 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu |
| JMFF012C19 | Sequence | 148 | 002440 (5) | 365 | 009649 (6) | ||||||
| JMFN034K22 | Sequence | 165 | 009649 (6) | ref|XP_007032572.1| | 6e-29 | Polypyrimidine tract-binding protein 1 isoform 3 [Theobroma cacao] gb|EOY03498.1 | |||||
| JMSF021D24 | Sequence | 631 | 002440 (5) | ref|XP_008379366.1| | 1e-96 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X4 [Malu | 728 | 009649 (6) | ref|XP_010257893.1| | 7e-64 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu |
| JMSF027L07 | Sequence | 667 | 017849 | ref|XP_011098646.1| | 7e-34 | PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X2 [Sesamum i | 767 | 009649 (6) | ref|XP_010257893.1| | 1e-98 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu |
| JMSF030L18 | Sequence | 642 | 002440 (5) | ref|XP_008379366.1| | 9e-99 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X4 [Malu | 727 | 009649 (6) | ref|XP_010257893.1| | 7e-64 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu |
This contig is upended
. : . : . : . : . : . :
rJMSF027L07+ CACAGTTGTGTTTGCCATGGATA
____________________________________________________________
consensus CACAGTTGTGTTTGCCATGGATA
. : . : . : . : . : . :
rJMSF027L07+ CTTAAGACTATACAAATCCATATCTTCCTGTTAATCCTACAGCAATGGAGGGATTCGTTC
rJMFF006M18+ CCTGTTAATCCTACAGCAATGGAGGGATTCGTTC
____________________________________________________________
consensus CTTAAGACTATACAAATCCATATCTTCCTGTTAATCCTACAGCAATGGAGGGATTCGTTC
. : . : . : . : . : . :
rJMSF027L07+ AGCCTGTTGTAGGTGTAGATGGAAAGAAAAAAGAGCCCGAGAGTAACGTGCTTCTTGCCT
rJMFF006M18+ AGCCTGTTGTAGGTGTAGATGGAAAGAAAAAAGAGCCCGAGAGTAACGTGCTTCTTGCCT
____________________________________________________________
consensus AGCCTGTTGTAGGTGTAGATGGAAAGAAAAAAGAGCCCGAGAGTAACGTGCTTCTTGCCT
. : . : . : . : . : . :
rJMSF027L07+ CCATTGAAAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGGTATTCTCTGCAT
rJMSF021D24+ GGTATTCTCTGCAT
rJMSF030L18+ GGTATTCTCTGCAT
rJMFF006M18+ CCATTGAAAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGGTATTCTCTGCAT
____________________________________________________________
consensus CCATTGAAAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGGTATTCTCTGCAT
. : . : . : . : . : . :
rJMSF027L07+ TTGGTACAGTCCAAAAGATTGCTATATTTGAGAAGAACGGGGGAACCCAAGCATTCATTC
rJMSF021D24+ TTGGTACAGTCCAAAAGATTGCTATATTTGAGAAGAACGGGGGAACCCAAGCATTCATTC
JMFN034K22- AGATTGCTATATTTGAGAAGAACGGGGGAACCCAAGCATTCATTC
rJMSF030L18+ TTGGTACAGTCCAAAAGATTGCTATATTTGAGAAGAACGGGGGAACCCAAGCATTCATTC
rJMFF006M18+ TTGGTACAGTCCAAAAGATTGCTATATTTGAGAAGAACGGGGGAACCCAAGCATTCATTC
____________________________________________________________
consensus TTGGTACAGTCCAAAAGATTGCTATATTTGAGAAGAACGGGGGAACCCAAGCATTCATTC
. : . : . : . : . : . :
rJMSF027L07+ AGTATCCCGATGTTACAACTGCCACTGTCGCAAAAGATGCATTAGAGGGGCATTGTATCT
rJMSF021D24+ AGTATCCCGATGTTACAACTGCCACTGTCGCAAAAGATGCATTAGAGGGGCATTGTATCT
JMFN034K22- AGTATCCCGATGTTACAACTGCCACTGTCGCAAAAGATGCATTAGAGGGGCATTGTATCT
rJMSF030L18+ AGTATCCCGATGTTACAACTGCCACTGTCGCAAAAGATGCATTAGAGGGGCATTGTATCT
rJMFF006M18+ AGTATCCCGATGTTACAACTGCCACTGTCGCAAAAGATGCATTAGAGGGGCATTGTATCT
____________________________________________________________
consensus AGTATCCCGATGTTACAACTGCCACTGTCGCAAAAGATGCATTAGAGGGGCATTGTATCT
. : . : . : . : . : . :
rJMSF027L07+ ATGACGGTGGCTACTGTAAGCTTCATCTATCGTATTCTCGTCACACTGATCTGAACGTAA
rJMSF021D24+ ATGACGGTGGCTACTGTAAGCTTCATCTATCGTATTCTCGTCACACTGATCTGAACGTAA
JMFN034K22- ATGACGGTGGCTACTGTAAGCTTCATCTATCGTATTCTCGTCACACTGATCTGAACGTAA
rJMSF030L18+ ATGACGGTGGCTACTGTAAGCTTCATCTATCGTATTCTCGTCACACTGATCTGAACGTAA
rJMFF006M18+ ATGACGGTGGCTACTGTAAGCTTCATCTATCGTATTCTCGTCACACTGATCTGAACGTAA
____________________________________________________________
consensus ATGACGGTGGCTACTGTAAGCTTCATCTATCGTATTCTCGTCACACTGATCTGAACGTAA
. : . : . : . : . : . :
rJMSF027L07+ AGGCATACAGCGACAAAAGTAGGGATTACACAGTCCCGGAATCAGGTTTGCAACAACCTT
rJMSF021D24+ AGGCATACAGCGACAAAAGTAGGGATTACACAGTCCCGGAATCAGGTTTGCAACAACCTT
rJMSF030L18+ AGGCATACAGCGACAAAAGTAGGGATTACACAGTCCCGGAATCAGGTTTGCAACAACCTT
rJMFF006M18+ AGGCATACAGCGACAAAAGTAGGGATTACACAGTCCCGGAATCAGGTTTGCAACAACCTT
____________________________________________________________
consensus AGGCATACAGCGACAAAAGTAGGGATTACACAGTCCCGGAATCAGGTTTGCAACAACCTT
. : . : . : . : . : . :
rJMSF027L07+ CTGCCCTCCCTAATACGGCACCCGCCTGGCAAAACCCACAGTACGTTTCTGTACACTCTG
rJMSF021D24+ CTGCCCTCCCTAATACGGCACCCGCCTGGCAAAACCCACAGTACGTTTCTGTACACTCTG
rJMSF030L18+ CTGCCCTCCCTAATACGGCACCCGCCTGGCAAAACCCACAGTACGTTTCTGTACACTCTG
rJMFF006M18+ CTGCCCTCCCTAATACGGCACCCGCCTGGCAAAACCCACAGTACGTTTCTGTACACTCTG
rJMFF012C19+ CTCTG
____________________________________________________________
consensus CTGCCCTCCCTAATACGGCACCCGCCTGGCAAAACCCACAGTACGTTTCTGTACACTCTG
. : . : . : . : . : . :
rJMSF027L07+ CAGCTCCTCCTGCCACCATGCCCATGCAAAATCCTTGGGATCCAACCATGCAGGGCGGAA
rJMSF021D24+ CAGCTCCTCCTGCCACCATGCCCATGCAAAATCCTTGGGATCCAACCATGCAGGGCGGAA
rJMSF030L18+ CAGCTCCTCCTGCCACCATGCCCATGCAAAATCCTTGGGATCCAACCATGCAGGGCGGAA
rJMFF006M18+ CAGCTCCTCCTGCCACCATGCCCATGCAAAATCCTTGGGATCCAACCATGCAGGGCGGAA
rJMFF012C19+ CAGCTCCTCNTGCCACCATGCCCATGCAAAATCCTTGGGATCCAACCATGCAGGGCGGAA
____________________________________________________________
consensus CAGCTCCTCCTGCCACCATGCCCATGCAAAATCCTTGGGATCCAACCATGCAGGGCGGAA
. : . : . : . : . : . :
rJMSF027L07+ GACCAGCCTTCATTTCATCTCCAACCACATTTCCCGGTCAAGAATATGCTTCTCCCCTGG
rJMSF021D24+ GACCAGCCTTCATTTCATCTCCAACCACATTTCCCGGTCAAGAATATGCTTCTCCCCTGG
rJMSF030L18+ GACCAGCCTTCATTTCATCTCCAACCACATTTCCCGGTCAAGAATATGCTTCTCCCCTGG
rJMFF006M18+ GACCAGCCTTCATTTCATCTCCAACCACATTTCCCGGTCAAGAATATGCTTCTCCCCTGG
rJMFF012C19+ GACCAGCCTTCATTTCATCTCCAACCACATTTCCCGGTCAAGAATATGCTTCTCCCCTGG
____________________________________________________________
consensus GACCAGCCTTCATTTCATCTCCAACCACATTTCCCGGTCAAGAATATGCTTCTCCCCTGG
. : . : . : . : . : . :
rJMSF027L07+ TTCCATTTGGCGCAAATCAGCCTGCCCATCAAGGCATTCCACCTCCCGGTCAGCCTCGTT
rJMSF021D24+ TTCCATTTGGCGCAAATCAGCCTGCCCATCAAGGCATTCCACCTCCCGGTCAGCCTCGTT
rJMSF030L18+ TTCCATTTGGCGCAAATCAGCCTGCCCATCAAGGCATTCCACCTCCCGGTCAGCCTCGTT
rJMFF006M18+ TTCCATTTGGCGCAAATCAGCCTGCCCATCAAGGCATTCCACCTCCCGGTCAGCCTCGTT
rJMFF012C19+ TTCCATTTGGCGCAAATCAGCNTGCCCATCAAGGCATTCCACCTCCCGGTCAGCCTCGTT
____________________________________________________________
consensus TTCCATTTGGCGCAAATCAGCCTGCCCATCAAGGCATTCCACCTCCCGGTCAGCCTCGTT
. : . : . : . : . : . :
rJMSF027L07+ AACTTTTAGCTTTTGCTTAGGTTGGATCTCGTAGAACACAACAAAGCTGTTCATATGTTT
rJMSF021D24+ AACTTTTAGCTTTTGCTTAGGTTGGATCTCGTAGAACACAACAAAGCTGTTCATATGTTT
rJMSF030L18+ AACTTTTAGCTTTTGCTTAGGTTGGATCTCGTAGAACACAACAAAGCTGTTCATATGTTT
rJMFF006M18+ AACTTTTAGCTTTTGCTTAGGTTGGATCTCGTAGAACACAACAAAGCTGTTCATATGTTT
rJMFF012C19+ AACTTTTAGCTTTTGNTTAGGTTGGATCTNGTAGAACACAACAAAGCTGTTCATATGTTT
____________________________________________________________
consensus AACTTTTAGCTTTTGCTTAGGTTGGATCTCGTAGAACACAACAAAGCTGTTCATATGTTT
. : . : . : . : . : . :
rJMSF027L07+ GGTTTTGTGTAATC-TGTGTGAGCT
rJMSF021D24+ GGTTTTGTGTAATC-TGTGTGAGCTTGCTTCTAACATCACTCTATTTGCCTCAAGCATGG
rJMSF030L18+ GGTTTTGTGTAATC-TGTGTGAGCTTGCTTCTAACATCACTCTATTTGCCTCAAGCATGG
rJMFF006M18+ GGTTTTGTGTAATC-TGTGTGAGCTTGCTTCTAACATCACTCTATTTGCCTCAAGCATGG
rJMFF012C19+ GGTTTNGTGTAATCATGTGTGAGCTTGTTTCTAACATCACTATATTTGCCTCAAGCATGG
____________________________________________________________
consensus GGTTTTGTGTAATC-TGTGTGAGCTTGCTTCTAACATCACTCTATTTGCCTCAAGCATGG
. : . : . : . : . : . :
rJMSF021D24+ ATACAT
rJMSF030L18+ ATACAT
rJMFF006M18+ ATACATTAACTACTACAATATGCATCTACTCATTCTTACA
rJMFF012C19+ ATACATTAACTACTACAATATGCATCTANTCATTNTTACANGCATTTCTTCAGTAANTTA
____________________________________________________________
consensus ATACATTAACTACTACAATATGCATCTACTCATTCTTACANGCATTTCTTCAGTAANTTA