Contig 009634:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010A05Sequence541000995 (9)gb|KGN61503.1|3e-55Methylenetetrahydrofolate reductase [Cucumis sativus]722009634 (6)gb|ABK92634.1|3e-89unknown [Populus trichocarpa]
JMFF010E12Sequence735009634 (6)gb|ABK92634.1|3e-92unknown [Populus trichocarpa]
JMFF036C04Sequence487000995 (9)gb|KGN61503.1|1e-69Methylenetetrahydrofolate reductase [Cucumis sativus]769009634 (6)gb|ABK92634.1|1e-99unknown [Populus trichocarpa]
JMSF040N21Sequence644000995 (9)ref|XP_008457198.1|9e-107PREDICTED: probable methylenetetrahydrofolate reductase [Cucumis melo] ref|XP_0858009634 (6)ref|XP_004250093.1|7e-109PREDICTED: methylenetetrahydrofolate reductase 2-like [Solanum lycopersicum]
JMSF048E15Sequence700000995 (9)gb|KGN61503.1|5e-105Methylenetetrahydrofolate reductase [Cucumis sativus]782009634 (6)gb|ABK92634.1|2e-104unknown [Populus trichocarpa]
JMSF050D05Sequence301000995 (9)gb|KGN61503.1|6e-06Methylenetetrahydrofolate reductase [Cucumis sativus]754009634 (6)gb|ABK92634.1|2e-94unknown [Populus trichocarpa]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040N21+ GGAGCCCNTTCTGACCCATCAGTTCATGCGGCC
                      ____________________________________________________________
consensus GGAGCCCNTTCTGACCCATCAGTTCATGCGGCC
 
. : . : . : . : . : . :
rJMSF048E15+ AGAGTGGGCTGTTCCNTTGAATAGCTTTGAAG
rJMSF050D05+ TGAATAGCTTNGAAG
rJMSF040N21+ ACGTGCCACGGGATAAGAAACTTCAAGAAGAGTGGGCTGTTCCTTTGAATAGCTTTGAAG
rJMFF036C04+ GAAG
                      ____________________________________________________________
consensus ACGTGCCACGGGATAAGAAACTTCAAGAAGAGTGGGCTGTTCCTTTGAATAGCTTTGAAG
 
. : . : . : . : . : . :
rJMSF048E15+ ATATTGGTGAGATATTTTCCAAGTACTGTCTTGGAGAACTCAGAAGTAACCCTTGGTCTG
rJMSF050D05+ ATANTGGTGAGATATTTTCCAAGTACTGTCT-GGAGAACTCAGAAGTAACCCTTGGTCTG
rJMSF040N21+ ATATTGGTGAGATATTTTCCAAGTACTGTCTTGGAGAACTCAGAAGTAACCCTTGGTCTG
rJMFF036C04+ ATATTGGTGAGATATTTCCCAAGTACTGTCTNGGAGAACTCAGAAGTAACCCTTGGTCTG
rJMFF010E12+ CCCTTGGTCTG
rJMFF010A05+ CTG
                      ____________________________________________________________
consensus ATATTGGTGAGATATTTTCCAAGTACTGTCTTGGAGAACTCAGAAGTAACCCTTGGTCTG
 
. : . : . : . : . : . :
rJMSF048E15+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMSF050D05+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMSF040N21+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMFF036C04+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMFF010E12+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMFF010A05+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
                      ____________________________________________________________
consensus AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
 
. : . : . : . : . : . :
rJMSF048E15+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMSF050D05+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMSF040N21+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMFF036C04+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMFF010E12+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMFF010A05+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
                      ____________________________________________________________
consensus AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
 
. : . : . : . : . : . :
rJMSF048E15+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMSF050D05+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMSF040N21+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMFF036C04+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMFF010E12+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMFF010A05+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
                      ____________________________________________________________
consensus CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
 
. : . : . : . : . : . :
rJMSF048E15+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMSF050D05+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMSF040N21+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMFF036C04+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMFF010E12+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMFF010A05+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
                      ____________________________________________________________
consensus TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
 
. : . : . : . : . : . :
rJMSF048E15+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMSF050D05+ CCTACATTGCAGTGAATAAAGAAGGGACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMSF040N21+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMFF036C04+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMFF010E12+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMFF010A05+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
                      ____________________________________________________________
consensus CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
 
. : . : . : . : . : . :
rJMSF048E15+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMSF050D05+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMSF040N21+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMFF036C04+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMFF010E12+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMFF010A05+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
                      ____________________________________________________________
consensus ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
 
. : . : . : . : . : . :
rJMSF048E15+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMSF050D05+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMSF040N21+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMFF036C04+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMFF010E12+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMFF010A05+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
                      ____________________________________________________________
consensus CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
 
. : . : . : . : . : . :
rJMSF048E15+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMSF050D05+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMSF040N21+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMFF036C04+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMFF010E12+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMFF010A05+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
                      ____________________________________________________________
consensus AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
 
. : . : . : . : . : . :
rJMSF048E15+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMSF050D05+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMSF040N21+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMFF036C04+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMFF010E12+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMFF010A05+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
                      ____________________________________________________________
consensus TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
 
. : . : . : . : . : . :
rJMSF048E15+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMSF050D05+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTNTGCTCAGTGATCGA
rJMSF040N21+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMFF036C04+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMFF010E12+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMFF010A05+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
                      ____________________________________________________________
consensus ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
 
. : . : . : . : . : . :
rJMSF048E15+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMSF050D05+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMSF040N21+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMFF036C04+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMFF010E12+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMFF010A05+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
                      ____________________________________________________________
consensus TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
 
. : . : . : . : . : . :
rJMSF048E15+ CACTCTCATATTGTAATGT-ACTATTTCGGT
rJMSF050D05+ CACTCTCATATTGTAATGTA
rJMSF040N21+ CACTCTCATATTGTAATGTAACTATTTCGGTCACTCCAAGCAATT
rJMFF036C04+ CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATT
rJMFF010E12+ CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATT
rJMFF010A05+ CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATTTCATATGCAGAAACT
                      ____________________________________________________________
consensus CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATTTCATATGCAGAAACT