| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010A05 | Sequence | 541 | 000995 (9) | gb|KGN61503.1| | 3e-55 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 722 | 009634 (6) | gb|ABK92634.1| | 3e-89 | unknown [Populus trichocarpa] |
| JMFF010E12 | Sequence | 735 | 009634 (6) | gb|ABK92634.1| | 3e-92 | unknown [Populus trichocarpa] | |||||
| JMFF036C04 | Sequence | 487 | 000995 (9) | gb|KGN61503.1| | 1e-69 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 769 | 009634 (6) | gb|ABK92634.1| | 1e-99 | unknown [Populus trichocarpa] |
| JMSF040N21 | Sequence | 644 | 000995 (9) | ref|XP_008457198.1| | 9e-107 | PREDICTED: probable methylenetetrahydrofolate reductase [Cucumis melo] ref|XP_0 | 858 | 009634 (6) | ref|XP_004250093.1| | 7e-109 | PREDICTED: methylenetetrahydrofolate reductase 2-like [Solanum lycopersicum] |
| JMSF048E15 | Sequence | 700 | 000995 (9) | gb|KGN61503.1| | 5e-105 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 782 | 009634 (6) | gb|ABK92634.1| | 2e-104 | unknown [Populus trichocarpa] |
| JMSF050D05 | Sequence | 301 | 000995 (9) | gb|KGN61503.1| | 6e-06 | Methylenetetrahydrofolate reductase [Cucumis sativus] | 754 | 009634 (6) | gb|ABK92634.1| | 2e-94 | unknown [Populus trichocarpa] |
This contig is upended
. : . : . : . : . : . :
rJMSF040N21+ GGAGCCCNTTCTGACCCATCAGTTCATGCGGCC
____________________________________________________________
consensus GGAGCCCNTTCTGACCCATCAGTTCATGCGGCC
. : . : . : . : . : . :
rJMSF048E15+ AGAGTGGGCTGTTCCNTTGAATAGCTTTGAAG
rJMSF050D05+ TGAATAGCTTNGAAG
rJMSF040N21+ ACGTGCCACGGGATAAGAAACTTCAAGAAGAGTGGGCTGTTCCTTTGAATAGCTTTGAAG
rJMFF036C04+ GAAG
____________________________________________________________
consensus ACGTGCCACGGGATAAGAAACTTCAAGAAGAGTGGGCTGTTCCTTTGAATAGCTTTGAAG
. : . : . : . : . : . :
rJMSF048E15+ ATATTGGTGAGATATTTTCCAAGTACTGTCTTGGAGAACTCAGAAGTAACCCTTGGTCTG
rJMSF050D05+ ATANTGGTGAGATATTTTCCAAGTACTGTCT-GGAGAACTCAGAAGTAACCCTTGGTCTG
rJMSF040N21+ ATATTGGTGAGATATTTTCCAAGTACTGTCTTGGAGAACTCAGAAGTAACCCTTGGTCTG
rJMFF036C04+ ATATTGGTGAGATATTTCCCAAGTACTGTCTNGGAGAACTCAGAAGTAACCCTTGGTCTG
rJMFF010E12+ CCCTTGGTCTG
rJMFF010A05+ CTG
____________________________________________________________
consensus ATATTGGTGAGATATTTTCCAAGTACTGTCTTGGAGAACTCAGAAGTAACCCTTGGTCTG
. : . : . : . : . : . :
rJMSF048E15+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMSF050D05+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMSF040N21+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMFF036C04+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMFF010E12+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
rJMFF010A05+ AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
____________________________________________________________
consensus AAATAGATGGGCTTCAACCAGAGACAAAAACCATCAACGAACAGTTGGGTGTTATTAACA
. : . : . : . : . : . :
rJMSF048E15+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMSF050D05+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMSF040N21+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMFF036C04+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMFF010E12+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
rJMFF010A05+ AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
____________________________________________________________
consensus AAAAAGGGTTCCTTACAATCAACAGCCAACCAGCAGTTAATGGAGAAAAATCTGGCTCAC
. : . : . : . : . : . :
rJMSF048E15+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMSF050D05+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMSF040N21+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMFF036C04+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMFF010E12+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
rJMFF010A05+ CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
____________________________________________________________
consensus CTTCTGTTGGTTGGGGTGGCCCTGGTGGCTATGTATATCAGAAGGCATATTTGGAGTTTT
. : . : . : . : . : . :
rJMSF048E15+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMSF050D05+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMSF040N21+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMFF036C04+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMFF010E12+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
rJMFF010A05+ TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
____________________________________________________________
consensus TCTGCTCAAAGCAGAAGTTAGATGCCCTTGTTGAGAAATGCAAAACCTTCCCATCTCTCA
. : . : . : . : . : . :
rJMSF048E15+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMSF050D05+ CCTACATTGCAGTGAATAAAGAAGGGACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMSF040N21+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMFF036C04+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMFF010E12+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
rJMFF010A05+ CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
____________________________________________________________
consensus CCTACATTGCAGTGAATAAAGAAGGAACTTTGGTTTCTAATGTGGAGCAAACTGATGTGA
. : . : . : . : . : . :
rJMSF048E15+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMSF050D05+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMSF040N21+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMFF036C04+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMFF010E12+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
rJMFF010A05+ ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
____________________________________________________________
consensus ATGCTGTGACATGGGGGGTCTTCCCAGCAAAGGAGATAATTCAACCAACAGTTGTTGATC
. : . : . : . : . : . :
rJMSF048E15+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMSF050D05+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMSF040N21+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMFF036C04+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMFF010E12+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
rJMFF010A05+ CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
____________________________________________________________
consensus CTGTCAGCTTTATGATATGGAAGGATGAGGCTTTCGAAACATGGTCCAAGGGTTGGGGTC
. : . : . : . : . : . :
rJMSF048E15+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMSF050D05+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMSF040N21+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMFF036C04+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMFF010E12+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
rJMFF010A05+ AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
____________________________________________________________
consensus AGCTATACCCCGAGTCTGATCTCTCCAGAAAGTTGCTTGAAGAGGTTCAAAAGACTTTTT
. : . : . : . : . : . :
rJMSF048E15+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMSF050D05+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMSF040N21+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMFF036C04+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMFF010E12+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
rJMFF010A05+ TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
____________________________________________________________
consensus TCTTGGTGAGTTTGGTGGACAATGATTACGTCCATGGTGATCTGTTTGCTATCTTCAAGG
. : . : . : . : . : . :
rJMSF048E15+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMSF050D05+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTNTGCTCAGTGATCGA
rJMSF040N21+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMFF036C04+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMFF010E12+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
rJMFF010A05+ ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
____________________________________________________________
consensus ATCTGTGACCATCACTAGCAGAAGCACTATCAAATTCAATTCTTTTTGCTCAGTGATCGA
. : . : . : . : . : . :
rJMSF048E15+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMSF050D05+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMSF040N21+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMFF036C04+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMFF010E12+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
rJMFF010A05+ TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
____________________________________________________________
consensus TCAAAGTTAATTCTTCCTTCTTGTTTTAAACATTTGTGTGTTACTTAAATTCTGGTATAA
. : . : . : . : . : . :
rJMSF048E15+ CACTCTCATATTGTAATGT-ACTATTTCGGT
rJMSF050D05+ CACTCTCATATTGTAATGTA
rJMSF040N21+ CACTCTCATATTGTAATGTAACTATTTCGGTCACTCCAAGCAATT
rJMFF036C04+ CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATT
rJMFF010E12+ CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATT
rJMFF010A05+ CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATTTCATATGCAGAAACT
____________________________________________________________
consensus CACTCTCATATTGTAATGT-ACTATTTCGGTCACTCCAAGCAATTTCATATGCAGAAACT