Contig 009632:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009L24Sequence431006503 (11)ref|XP_009601532.1|6e-53PREDICTED: auxin efflux carrier component 3-like isoform X1 [Nicotiana tomentos713009632 (4)gb|AIF28348.1|3e-31PIN-like protein, partial [Strelitzia reginae]
JMSF015G02Sequence232006503 (11)ref|NP_564189.1|6e-08auxin efflux carrier component 7 [Arabidopsis thaliana] gb|AAK96547.1| At1g23080732009632 (4)ref|XP_002530487.1|8e-43hypothetical protein RCOM_0566910 [Ricinus communis] gb|EEF31910.1| hypothetical
JMSF017E02Sequence237006503 (11)ref|XP_009601548.1|4e-10PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb|674009632 (4)gb|AIF28348.1|3e-49PIN-like protein, partial [Strelitzia reginae]
JMSF021K08Sequence676006503 (11)gb|AGG79243.1|8e-112auxin efflux facilitator PIN3b [Nicotiana tabacum]720009632 (4)ref|XP_002530487.1|9e-42hypothetical protein RCOM_0566910 [Ricinus communis] gb|EEF31910.1| hypothetical

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF017E02+ AAGATAATTTCATGTGGGAACACGGTGGCGTCCTTTGCCATGGCGGTTAGGT
rJMSF021K08+ TTTGCCATGGCGGTTAGGT
rJMSF015G02+ GTGGCGTCCTTTGCCATGGCGGTTAGGT
                      ____________________________________________________________
consensus AAGATAATTTCATGTGGGAACACGGTGGCGTCCTTTGCCATGGCGGTTAGGT
 
. : . : . : . : . : . :
rJMSF017E02+ TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMSF021K08+ TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMSF015G02+ TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMFF009L24+ CCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
                      ____________________________________________________________
consensus TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
 
. : . : . : . : . : . :
rJMSF017E02+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMSF021K08+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMSF015G02+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMFF009L24+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
                      ____________________________________________________________
consensus TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
 
. : . : . : . : . : . :
rJMSF017E02+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMSF021K08+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMSF015G02+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMFF009L24+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
                      ____________________________________________________________
consensus CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
 
. : . : . : . : . : . :
rJMSF017E02+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMSF021K08+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMSF015G02+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMFF009L24+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
                      ____________________________________________________________
consensus TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
 
. : . : . : . : . : . :
rJMSF017E02+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
rJMSF021K08+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
rJMSF015G02+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATT-TGCTGGAGATGGGTCATGTATCA
rJMFF009L24+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
                      ____________________________________________________________
consensus ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
 
. : . : . : . : . : . :
rJMSF017E02+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMSF021K08+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMSF015G02+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMFF009L24+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
                      ____________________________________________________________
consensus ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
 
. : . : . : . : . : . :
rJMSF017E02+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMSF021K08+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMSF015G02+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMFF009L24+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
                      ____________________________________________________________
consensus GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
 
. : . : . : . : . : . :
rJMSF017E02+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMSF021K08+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMSF015G02+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMFF009L24+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
                      ____________________________________________________________
consensus GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
 
. : . : . : . : . : . :
rJMSF017E02+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMSF021K08+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMSF015G02+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMFF009L24+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
                      ____________________________________________________________
consensus GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
 
. : . : . : . : . : . :
rJMSF017E02+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAANGA
rJMSF021K08+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
rJMSF015G02+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
rJMFF009L24+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAA--AGAGCAAAACAAGGAGGCAAAAGA
                      ____________________________________________________________
consensus AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
 
. : . : . : . : . : . :
rJMSF017E02+ CTGATGTACTNTGGGTTATATT
rJMSF021K08+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
rJMSF015G02+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
rJMFF009L24+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
                      ____________________________________________________________
consensus GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
 
. : . : . : . : . : . :
rJMSF021K08+ GGTACGCGTGTAAAGTGTCGATT
rJMSF015G02+ GGTACGCGTGTAAAGTGTCGA-TTGAACAAAAAAAAATCGTC
rJMFF009L24+ GGTACGCGTGTAAAGTGTCGATTTGAACAAAAAAAAATCGTCTATCTAGTTATCGAAAAT
                      ____________________________________________________________
consensus GGTACGCGTGTAAAGTGTCGATTTGAACAAAAAAAAATCGTCTATCTAGTTATCGAAAAT