| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002C19 | Sequence | 364 | 006082 (4) | ref|XP_009794665.1| | 9e-40 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 737 | 009630 (4) | gb|EYU29487.1| | 1e-126 | hypothetical protein MIMGU_mgv1a0028802mg, partial [Erythranthe guttata] gb|EYU |
| JMFF008L03 | Sequence | 204 | 006082 (4) | ref|XP_004232400.1| | 1e-17 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 824 | 009630 (4) | ref|XP_004166314.1| | 6e-132 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho |
| JMFF046F22 | Sequence | 444 | 006082 (4) | ref|XP_009794665.1| | 5e-63 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 382 | 009630 (4) | ref|XP_006573312.1| | 2e-33 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochond |
| JMFF051E02 | Sequence | 621 | 006082 (4) | ref|XP_004232400.1| | 9e-109 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 384 | 009630 (4) | ref|XP_009794664.1| | 1e-32 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho |
This contig is upended
. : . : . : . : . : . :
rJMFF008L03+ GCGTTCCANCAAATTACCCATGGAGAGGTGGTGACTATTAAAGG
____________________________________________________________
consensus GCGTTCCANCAAATTACCCATGGAGAGGTGGTGACTATTAAAGG
. : . : . : . : . : . :
rJMFF002C19+ GAGAAGCAGCNTGTGCATC
rJMFF008L03+ TAATGATCCTGATGCTGTTGTGCNTGNCNTCATGGCTGCTGGAGAAGCAGCNTGTGCATC
____________________________________________________________
consensus TAATGATCCTGATGCTGTTGTGCNTGNCNTCATGGCTGCTGGAGAAGCAGCNTGTGCATC
. : . : . : . : . : . :
rJMFF002C19+ AGTTCACGGTGCCAATCGGTTAGGCGCAAATTCTCTTCTTGACATTGTTGTTTTTGGCCG
rJMFF008L03+ AGTTCACGGTGCCAATCGGTTAGGCGCAAATTCTCTTCTTGACATTGTTGTTTTTGGCCG
____________________________________________________________
consensus AGTTCACGGTGCCAATCGGTTAGGCGCAAATTCTCTTCTTGACATTGTTGTTTTTGGCCG
. : . : . : . : . : . :
rJMFF002C19+ GGCATGTGCTAATCGGGTCGCAGAAATCCATAGACCAGGGCAACAACAAAAGCCTTTGGA
rJMFF008L03+ GGCATGTGCTAATCGGGTCGCAGAAATCCATAGACCAGGGCAACAACAAAAGCCTTTGGA
____________________________________________________________
consensus GGCATGTGCTAATCGGGTCGCAGAAATCCATAGACCAGGGCAACAACAAAAGCCTTTGGA
. : . : . : . : . : . :
rJMFF002C19+ AAAGGATTCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTC
rJMFF008L03+ AAAGGATTCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTC
____________________________________________________________
consensus AAAGGATTCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTC
. : . : . : . : . : . :
rJMFF002C19+ ATTGCCCACATCTAAGATTCGGTTGAATATGCAAAGAGTAATGCAAAACAATGCTGCTGT
rJMFF008L03+ ATTGCCCACATCTAAGATTCGGTTGAATATGCAAAGAGTAATGCAAAACAATGCTGCTGT
____________________________________________________________
consensus ATTGCCCACATCTAAGATTCGGTTGAATATGCAAAGAGTAATGCAAAACAATGCTGCTGT
. : . : . : . : . : . :
rJMFF002C19+ TTTCCGTACACAAGAGACTTTACAAGAAGGTTGTCAGTTGATTGACAAGACATGGGACAG
rJMFF008L03+ TTTCCGTACACAAGAGACTTTACAAGAAGGTTGTCAGTTGATTGACAAGACATGGGACAG
____________________________________________________________
consensus TTTCCGTACACAAGAGACTTTACAAGAAGGTTGTCAGTTGATTGACAAGACATGGGACAG
. : . : . : . : . : . :
rJMFF002C19+ TTTCCATGATGTGAAGGTGAAGGATCGAAATTTGATCTGGAACTCAGACCTTATAGAAAC
rJMFF008L03+ TTTCCATGATGTGAAGGTGAAGGATCGAAATTTGATCTGGAACTCAGACCTTATAGAAAC
____________________________________________________________
consensus TTTCCATGATGTGAAGGTGAAGGATCGAAATTTGATCTGGAACTCAGACCTTATAGAAAC
. : . : . : . : . : . :
rJMFF002C19+ TATTGAGTTGGAAAACCTGTTGATTAATGCATGTATTACAATGCACTCTGCTGAAGCCAG
rJMFF008L03+ TATTGAGTTGGAAAACCTGTTGATTAATGCATGTATTACAATGCACTCTGCTGAAGCCAG
____________________________________________________________
consensus TATTGAGTTGGAAAACCTGTTGATTAATGCATGTATTACAATGCACTCTGCTGAAGCCAG
. : . : . : . : . : . :
rJMFF046F22+ AAAAGAAAGCAGAGGTGCACATGCCCGTGAAGATTTTACGACAAGAGATGATGAGAAATG
rJMFF051E02+ AAAAGAAAGCAGAGGTGCACATGCCCGTGAAGATTTTNCGCCAAGAGATGATGAGAAATG
rJMFF002C19+ AAAAGAAAGCAGAGGTGCACATGCCCGTGAAGATTTTACGACAAGAGATGATGAGAAATG
rJMFF008L03+ AAAAGAAAGCAGAGGTGCACATGCCCGTGAAGATTTTACGACAAGAGATGATGAGAAATG
____________________________________________________________
consensus AAAAGAAAGCAGAGGTGCACATGCCCGTGAAGATTTTACGACAAGAGATGATGAGAAATG
. : . : . : . : . : . :
rJMFF046F22+ GATGAAACATACATTGGGATATTGGGAGAATGAGAAAGTAAGGCTAGAATACAGGCCTGT
rJMFF051E02+ GATGAAACATCCATTGGGATATTGGGAGAATGAGAAAGTAAGGCTAGAATACAGGCCTGT
rJMFF002C19+ GATGAAACATACATTGGGATATTGGGAGAATGAGAAAGTAAGGCTAGAATACAGGCCTGT
rJMFF008L03+ GATGAAACATACATTGGGATATTGGGAGAATGAGAAAGTAAGGCTAGAATACAGGCCTGT
____________________________________________________________
consensus GATGAAACATACATTGGGATATTGGGAGAATGAGAAAGTAAGGCTAGAATACAGGCCTGT
. : . : . : . : . : . :
rJMFF046F22+ TCACATGAATACATTGGATGATGAAATTGAGACATTCCCACCGAAGGCGCGTGTGTATTA
rJMFF051E02+ TCACATGAATACATTGGATGATGAAATTGAGACATTCCCACCGAAGGCGCGTGTGTATTA
rJMFF002C19+ TCACATGAATACATTGGATGATGAAATTGAGACATTCCCACCGAAGGCGCGTGTGTATTA
rJMFF008L03+ TCACATGAATACATTGGATGATGAAATTGAGACATTCCCACCGAAGGCGCGTGTGTATTA
____________________________________________________________
consensus TCACATGAATACATTGGATGATGAAATTGAGACATTCCCACCGAAGGCGCGTGTGTATTA
. : . : . : . : . : . :
rJMFF002C19+ GCATAGCTACATGGATAGTTGTTGGCTAACCAAAATAATCTCACCTCCTTAAAGGTTTCA
rJMFF008L03+ GCATAGCTACATGGATAGTTGTTGGCTAACCAAAATAATCTCACCTCCTTAAAGGTTTCA
____________________________________________________________
consensus GCATAGCTACATGGATAGTTGTTGGCTAACCAAAATAATCTCACCTCCTTAAAGGTTTCA
. : . : . : . : . : . :
rJMFF002C19+ ATAACCTACTTAGGAGATCTTGTATTCTCAAATTTTGGTAATAAATTATTGCAGTCAT
rJMFF008L03+ ATAACCTACTTAGGAGATCTTGTATTCTCAAATTTTGGTAATAAATTATTGCAGTCATCT
____________________________________________________________
consensus ATAACCTACTTAGGAGATCTTGTATTCTCAAATTTTGGTAATAAATTATTGCAGTCATCT