| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008K08 | Sequence | 239 | 005907 (4) | emb|CDP10238.1| | 3e-08 | unnamed protein product [Coffea canephora] | 570 | 009629 (4) | ref|XP_004242593.1| | 152 | PREDICTED: transmembrane 9 superfamily member 4 [Solanum lycopersicum] |
| JMFF023I16 | Sequence | 427 | 001991 (18) | emb|CDP10238.1| | 4e-52 | unnamed protein product [Coffea canephora] | 784 | 009629 (4) | gb|KJB68420.1| | 4e-82 | hypothetical protein B456_010G244500 [Gossypium raimondii] |
| JMFN045G03 | Sequence | 598 | 009629 (4) | gb|KJB68420.1| | 7e-72 | hypothetical protein B456_010G244500 [Gossypium raimondii] | |||||
| JMSF025I15 | Sequence | 616 | 001991 (18) | ref|XP_009616553.1| | 5e-86 | PREDICTED: transmembrane 9 superfamily member 4-like [Nicotiana tomentosiformis | 130 | 009629 (4) | emb|CDX78401.1| | 1e-15 | BnaA03g03130D [Brassica napus] |
This contig is upended
. : . : . : . : . : . :
rJMFF023I16+ GTTGG
____________________________________________________________
consensus GTTGG
. : . : . : . : . : . :
rJMFF023I16+ TAGTTATGTTGGATTCAAGAAGCCAGCTATTGAGGAGCCCGTCAAAACGAATAAAATCCC
____________________________________________________________
consensus TAGTTATGTTGGATTCAAGAAGCCAGCTATTGAGGAGCCCGTCAAAACGAATAAAATCCC
. : . : . : . : . : . :
JMFN045G03- ATACCCGAGCAGGCCTGGTACATGAATCCGGTTTTCTCCATCTTGACCGGAGG
rJMSF025I15+ CAGATACCCGAGCAGGCNTGGTACANGAATCCGNTTTTCTCCATCNTGACCGGAGG
rJMFF023I16+ ACGACAGATACCCGAGCAGGCCTGGTACATGAATCCGGTTTTCTCCATCTTGACCGGAGG
____________________________________________________________
consensus ACGACAGATACCCGAGCAGGCCTGGTACATGAATCCGGTTTTCTCCATCTTGACCGGAGG
. : . : . : . : . : . :
JMFN045G03- CATATTGCCGTTTGGAGCTGTATTTATCGAGCTCTTTTTCATCCTTACTTCCATCTGGTT
rJMSF025I15+ CATATTGCCGTNCGGAGCTGTATTNATCGAGCTCTTTTTCATCCTTACNTCCATCTGGNT
rJMFF023I16+ CATATTGCCGTTTGGAGCTGTATTTATCGAGCTCTTTTTCATCCTTACTTCCATCTGGTT
____________________________________________________________
consensus CATATTGCCGTTTGGAGCTGTATTTATCGAGCTCTTTTTCATCCTTACTTCCATCTGGTT
. : . : . : . : . : . :
JMFN045G03- GAATCAGTTCTACTACATCTTCGGGTTCCTCTTCATCGTGTTTGTCATCCTGATCGTCAC
rJMSF025I15+ GAATCAGT
rJMFF023I16+ GAATCAGTTCTACTACATCTTCGGGTTCCTCTTCATCGTGTTTGTCATCCTGATCGTCAC
rJMFF008K08+ CTTCATCGTGTTGGTCATCCTGATCGTCAC
____________________________________________________________
consensus GAATCAGTTCTACTACATCTTCGGGTTCCTCTTCATCGTGTTTGTCATCCTGATCGTCAC
. : . : . : . : . : . :
JMFN045G03- CTGTGCTGAGATCACGATCGTTCTGTGCTATTTCCAGCTATGCAGCGAGGACTACCTCTG
rJMFF023I16+ CTGTGCTGAGATCACGATCGTTCTGTGCTATTTCCAGCTATGCAGCGAGGACTACCTCTG
rJMFF008K08+ NTGTGCNGAGATCACGATCGTTCTGTGCTATTTCCAGCTANGCAGCGAGGACTACCTCTG
____________________________________________________________
consensus CTGTGCTGAGATCACGATCGTTCTGTGCTATTTCCAGCTATGCAGCGAGGACTACCTCTG
. : . : . : . : . : . :
JMFN045G03- GTGGTGGAGATCATACCTTACTGCAGCTTCATCGGCGCTCTACCTCTTCCCTTATGCAGC
rJMFF023I16+ GTGGTGGAGATCATACCTTACTGCAGCTTCATCGGCGCTCTACCTCTTCCTTTATGCAGC
rJMFF008K08+ GTGGTGGAGATCATACCTTACTGCAGNTTCATCGGCGCTCTACCTCTTCCTTTATGCAGC
____________________________________________________________
consensus GTGGTGGAGATCATACCTTACTGCAGCTTCATCGGCGCTCTACCTCTTCCTTTATGCAGC
. : . : . : . : . : . :
JMFN045G03- GTTCTATTTCTTTACTAAGCTCGAGATCACAAAGCTCGTTTCTGGCATTCTCTATTTCGG
rJMFF023I16+ GTTCTATTTCTTTACTAAGCTCGAGATCACAAAGCTCGTTTCTGGCATTCTCTATTTCGG
rJMFF008K08+ GTTCTATTTCTTTACTAAGCTCGAGATCACAAAGCTCGTTTCTGGCATTCTCTATTTCGG
____________________________________________________________
consensus GTTCTATTTCTTTACTAAGCTCGAGATCACAAAGCTCGTTTCTGGCATTCTCTATTTCGG
. : . : . : . : . : . :
JMFN045G03- GTACATGCTGATTGCATCATATGCTTTCTTTGTGCTGACTGGAACTATCGGGTTCTATGC
rJMFF023I16+ GTACATGCTGATTGCATCATATGCTTTCTTTGTGCTGACTGGAACTATCGGGTTCTATGC
rJMFF008K08+ GTACATGCTGATTGCATCATATGCTTTCTTTGTGCTGACTGGAACTATCGGGTTCTATGC
____________________________________________________________
consensus GTACATGCTGATTGCATCATATGCTTTCTTTGTGCTGACTGGAACTATCGGGTTCTATGC
. : . : . : . : . : . :
JMFN045G03- TTGCTTTTGGTTCACAAGGCTCATCTACTCATCGGTTAAGATCGACTAAAT
rJMFF023I16+ TTGCTTTTGGTTCACAAGGCTCATCTACTCATCGGTTAAGATCGACTAAAT
rJMFF008K08+ TTGCTTTTGGTTCACAAGGCTCATCTACTCATCGGTTAAGATCGACTAAATGGGCTGATA
____________________________________________________________
consensus TTGCTTTTGGTTCACAAGGCTCATCTACTCATCGGTTAAGATCGACTAAATGGGCTGATA
. : . : . : . : . : . :
rJMFF008K08+ GTAACAAAGAAACCACATTGTATCTCTATATTGATGCATGCTTCGATTTTTCAGCAGAAA
____________________________________________________________
consensus GTAACAAAGAAACCACATTGTATCTCTATATTGATGCATGCTTCGATTTTTCAGCAGAAA
. : . : . : . : . : . :
rJMFF008K08+ TACATGCTTGTGAATACGGGCTACTTTCGAGGCTTGTTTTGTCTCTTTGTCATTCTCTAC
____________________________________________________________
consensus TACATGCTTGTGAATACGGGCTACTTTCGAGGCTTGTTTTGTCTCTTTGTCATTCTCTAC
. : . : . : . : . : . :
rJMFF008K08+ TGTTGAGCATTTGAAGAGTTAGACACAATGTTTAGAATTCTTTTGAGGAAAACATGTAAT
____________________________________________________________
consensus TGTTGAGCATTTGAAGAGTTAGACACAATGTTTAGAATTCTTTTGAGGAAAACATGTAAT
. : . : . : . : . : . :
rJMFF008K08+ GCACTTATGAACTCACAAGTTGGTTATGTTGCTGACAACTACTATGATTCTAGAAGAAAA
____________________________________________________________
consensus GCACTTATGAACTCACAAGTTGGTTATGTTGCTGACAACTACTATGATTCTAGAAGAAAA