| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006H04 | Sequence | 574 | 005898 (3) | ref|XP_004238357.1| | 2e-28 | PREDICTED: alkaline/neutral invertase CINV2 [Solanum lycopersicum] | 645 | 009617 (3) | gb|AFW90589.1| | 1e-104 | neutral invertase like protein [Solanum tuberosum] |
| JMFF036G17 | Sequence | 573 | 005898 (3) | ref|XP_004238357.1| | 2e-28 | PREDICTED: alkaline/neutral invertase CINV2 [Solanum lycopersicum] | 743 | 009617 (3) | gb|AFW90589.1| | 3e-131 | neutral invertase like protein [Solanum tuberosum] |
| JMSF015E18 | Sequence | 448 | 005898 (3) | ref|XP_004238357.1| | 2e-37 | PREDICTED: alkaline/neutral invertase CINV2 [Solanum lycopersicum] | 778 | 009617 (3) | ref|XP_009595684.1| | 2e-141 | PREDICTED: alkaline/neutral invertase CINV2-like isoform X1 [Nicotiana tomentos |
This contig is upended
. : . : . : . : . : . :
rJMSF015E18+ GTATTCGCACA
____________________________________________________________
consensus GTATTCGCACA
. : . : . : . : . : . :
rJMSF015E18+ CAGCAGTAAACAAGTTTAACGTGATGCCAGACTCTCTTCCAGATTGGGTGTTTGATTTCA
rJMFF036G17+ CTTCCAGATTGGGTGTTTGATTTCA
____________________________________________________________
consensus CAGCAGTAAACAAGTTTAACGTGATGCCAGACTCTCTTCCAGATTGGGTGTTTGATTTCA
. : . : . : . : . : . :
rJMSF015E18+ TGCCAACTCGAGGGGGATACTTCATTGGGAACGTAAGTCCAGCTAGAATGGACTTCCGTT
rJMFF036G17+ TGCCAACTCGAGGGGGATACTTCATTGGGAACGTAAGTCCAGCTAGAATGGACTTCCGTT
____________________________________________________________
consensus TGCCAACTCGAGGGGGATACTTCATTGGGAACGTAAGTCCAGCTAGAATGGACTTCCGTT
. : . : . : . : . : . :
rJMSF015E18+ GGTTTTGCTTGGGCAACTGCATCGCAATCTTGTCGTGTTTGGCTACACCCGAGCAAGCCT
rJMFF036G17+ GGTTTTGCTTGGGCAACTGCATCGCAATCTTGTCGTGTTTGGCTACACCCGAGCAAGCCT
rJMFF006H04+ AACTGCATCGCAATCTTGTCGTGTTTGGCTACACCCGAGCAAGCCT
____________________________________________________________
consensus GGTTTTGCTTGGGCAACTGCATCGCAATCTTGTCGTGTTTGGCTACACCCGAGCAAGCCT
. : . : . : . : . : . :
rJMSF015E18+ CGGCCATAATGGATCTCATTGAATCCCGATGGGAAGAGCTAGTCGGGGAAATGCCTCTAA
rJMFF036G17+ CGGCCATAATGGATCTCATTGAATCCCGATGGGAAGAGCTAGTCGGGGAAATGCCTCTAA
rJMFF006H04+ CGGCCATAATGGATCTCATTGAATCCCGATGGGAAGAGCTAGTCGGGGAAATGCCTCTAA
____________________________________________________________
consensus CGGCCATAATGGATCTCATTGAATCCCGATGGGAAGAGCTAGTCGGGGAAATGCCTCTAA
. : . : . : . : . : . :
rJMSF015E18+ AGATCTGTTATCCAGCCATGGAAGGTCACGAGTGGAGAATTGTCACGGGATGTGATCCAA
rJMFF036G17+ AGATCTGTTATCCAGCCATGGAAGGTCACGAGTGGAGAATTGTCACGGGATGTGATCCAA
rJMFF006H04+ AGATCTGTTATCCAGCCATGGAAGGTCACGAGTGGAGAATTGTCACGGGATGTGATCCAA
____________________________________________________________
consensus AGATCTGTTATCCAGCCATGGAAGGTCACGAGTGGAGAATTGTCACGGGATGTGATCCAA
. : . : . : . : . : . :
rJMSF015E18+ AGAACACCAGCTGGAGTTACCACAATGGTGGATCTTGGCCAGTCCTGCTATGGCTTCTCA
rJMFF036G17+ AGAACACCAGCTGGAGTTACCACAATGGTGGATCTTGGCCAGTCCTGCTATGGCTTCTCA
rJMFF006H04+ AGAACACCAGCTGGAGTTACCACAATGGTGGATCTTGGCCAGTCCTGCTATGGCTTCTCA
____________________________________________________________
consensus AGAACACCAGCTGGAGTTACCACAATGGTGGATCTTGGCCAGTCCTGCTATGGCTTCTCA
. : . : . : . : . : . :
rJMSF015E18+ CAGCAGCCTGCATCAAGACGGGACGACCCCAAATCGCGAGAAAGGCCATTGAGCTGGCCG
rJMFF036G17+ CAGCAGCCTGCATCAAGACGGGACGACCCCAAATCGCGAGAAAGGCCATTGAGCTGGCCG
rJMFF006H04+ CAGCAGCCTGCATCAAGACGGGACGACCCCAAATCGCGAGAAAGGCCATTGAGCTGGCCG
____________________________________________________________
consensus CAGCAGCCTGCATCAAGACGGGACGACCCCAAATCGCGAGAAAGGCCATTGAGCTGGCCG
. : . : . : . : . : . :
rJMSF015E18+ AAGCTCGCCTTTTGAAGGACAACTGGCCTGAATATTACGACGGGAAACATGGGCGCTACA
rJMFF036G17+ AAGCTCGCCTTTTGAAGGACAACTGGCCTGAATATTACGACGGGAAACATGGGCGCTACA
rJMFF006H04+ AAGCTCGCCTTTTGAAGGACAACTGGCCTGAATATTACGACGGGAAACATGGGCGCTACA
____________________________________________________________
consensus AAGCTCGCCTTTTGAAGGACAACTGGCCTGAATATTACGACGGGAAACATGGGCGCTACA
. : . : . : . : . : . :
rJMSF015E18+ TCGGGAAACAGGTCCGGAAGTGCCAGACGTGGTCGATTGCAGGTTACTTGGTGGCAAGGA
rJMFF036G17+ TCGGGAAACAGGCCCGGAAGTGCCAGACGTGGTCGATTGCAGGTTACTTGGTGGCAAGGA
rJMFF006H04+ TCGGGAAACAGGCCCGGAAGTGCCAGACGTGGTCGATTGCAGGTTACTTGGTGGCAAGGA
____________________________________________________________
consensus TCGGGAAACAGGCCCGGAAGTGCCAGACGTGGTCGATTGCAGGTTACTTGGTGGCAAGGA
. : . : . : . : . : . :
rJMSF015E18+ TGATGCTTGAAGATCCATCTCACATAGGTATGATTGCTCTTGAGGAAGACAAGCAGATGC
rJMFF036G17+ TGATGCTTGAAGATCCATCTCACATAGGTATGATTGCTCTTGAGGAAGACAAGCAGATGC
rJMFF006H04+ TGATGCTTGAAGATCCATCTCACATAGGTATGATTGCTCTTGAGGAAGACAAGCAGATGC
____________________________________________________________
consensus TGATGCTTGAAGATCCATCTCACATAGGTATGATTGCTCTTGAGGAAGACAAGCAGATGC
. : . : . : . : . : . :
rJMSF015E18+ TGCCTCAGATGAAAAGATCTTCTTCATGGATGTTTTGATGTTTACTTTGTCACACATATA
rJMFF036G17+ TGCCTCAGATGAAAAGATCTTCTTCATGGATGTTTTGATGTTTACTTTGTCACACATATA
rJMFF006H04+ TGCCTCAGATGAAAAGATCTTCTTCATGGATGTTTTGATGTTTACTTTGTCACACATATA
____________________________________________________________
consensus TGCCTCAGATGAAAAGATCTTCTTCATGGATGTTTTGATGTTTACTTTGTCACACATATA
. : . : . : . : . : . :
rJMSF015E18+ CCTATACTTTATCTACAGACACACTACACATCCTTAATGTACATTTTATTGTCTTTTTTT
rJMFF036G17+ CCTATACTTTATCTACAGACACACTACACATCCTTAATGTACATTTTATTGTCTTTTTTT
rJMFF006H04+ CCTATACTTTATCTACAGACACACTACACATCCTTAATGTACATTTTATTGTCTTTTTTT
____________________________________________________________
consensus CCTATACTTTATCTACAGACACACTACACATCCTTAATGTACATTTTATTGTCTTTTTTT
. : . : . : . : . : . :
rJMSF015E18+ AAAACAACCACGGCTATCGAACCAATGGTGTATGTTGCTCATTGAGA
rJMFF036G17+ AAAACAACCACGGCTATCGAA-CAATGGTGTATGTTGCTCATTGAGACAAGAGTTCATA
rJMFF006H04+ AAAACAACCACGGCTATCGAA-CAATGGTGTATGTTGCTCATTGAGACAAGAGTTCATAA
____________________________________________________________
consensus AAAACAACCACGGCTATCGAA-CAATGGTGTATGTTGCTCATTGAGACAAGAGTTCATAA