Contig 009613:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P20Sequence485009613 (2)ref|NP_001275222.1|2e-54syntaxin-like protein [Solanum tuberosum] gb|ABA46757.1| syntaxin-like protein [778009613 (2)ref|XP_010677351.1|1e-55PREDICTED: syntaxin-22 isoform X1 [Beta vulgaris subsp. vulgaris]

Alignment

This contig is upended


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JMFF005P20-                     ACAGTCAGAAATTTATACTCTATTGTCACCAACTCACCACCGTCCACCGC
                      ____________________________________________________________
consensus                       ACAGTCAGAAATTTATACTCTATTGTCACCAACTCACCACCGTCCACCGC
 
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JMFF005P20-           CCACCGCCACCGTCCTCTTGGCCGGAATTTGGAGGATTATATAAATTGAGAGGGGAAAAC
                      ____________________________________________________________
consensus             CCACCGCCACCGTCCTCTTGGCCGGAATTTGGAGGATTATATAAATTGAGAGGGGAAAAC
 
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JMFF005P20-           ACGAAGAAGAGAAGAGATGAGCTTTCAGGATCTAGAACCGGGTCGGCCGGCCGGGCCGCG
                      ____________________________________________________________
consensus             ACGAAGAAGAGAAGAGATGAGCTTTCAGGATCTAGAACCGGGTCGGCCGGCCGGGCCGCG
 
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JMFF005P20-           GCGGGGATACGTCAGTGTCAAACAGGACCCGCTCCAGGCTCAGATTTTCCAGATCAACAC
                      ____________________________________________________________
consensus             GCGGGGATACGTCAGTGTCAAACAGGACCCGCTCCAGGCTCAGATTTTCCAGATCAACAC
 
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JMFF005P20-           TGCCGTCTCCAGATTCCAAATGCTCATCAATTCCCTGGGGACGGCTAAGGACACCACAGA
                      ____________________________________________________________
consensus             TGCCGTCTCCAGATTCCAAATGCTCATCAATTCCCTGGGGACGGCTAAGGACACCACAGA
 
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JMFF005P20-           GCTACGCGATAGATTGCACAAGACAAGAGTGGAGATTGGACAGTTGGTGAAAGATACGGC
                      ____________________________________________________________
consensus             GCTACGCGATAGATTGCACAAGACAAGAGTGGAGATTGGACAGTTGGTGAAAGATACGGC
 
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JMFF005P20-           TTCCAAGTTAAAGCAAGCAAGTGAATCAGATCATGGTGCCGGAATCAGTGCTAGCAAGAA
rJMFF005P20+            CCAAGTTAAAGCAAGCAAGTGAATCAGATCATGGTGCNGGAATCAGTGCTAGCAAGAA
                      ____________________________________________________________
consensus             TTCCAAGTTAAAGCAAGCAAGTGAATCAGATCATGGTGCCGGAATCAGTGCTAGCAAGAA
 
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JMFF005P20-           AATTGCAGATGCCAAACTTGCTAAAGATTTTCAAGCTGTTTTGAACGTGTTTCAAAAGGC
rJMFF005P20+          AATTGCAGATGCCAAACTTGCTAAAGATTTTCAAGCTGTTTTGAACGTGTTTCAAAAGGC
                      ____________________________________________________________
consensus             AATTGCAGATGCCAAACTTGCTAAAGATTTTCAAGCTGTTTTGAACGTGTTTCAAAAGGC
 
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JMFF005P20-           ACAGAGGCTTTCCGC                                             
rJMFF005P20+          ACAGAGGCTTTCCGCAGAGGAGGAAACAGCGTATAAACCTGTTGTTGTTCCTCAAACTGT
                      ____________________________________________________________
consensus             ACAGAGGCTTTCCGCAGAGGAGGAAACAGCGTATAAACCTGTTGTTGTTCCTCAAACTGT
 
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rJMFF005P20+          TGTTTCTTCCAGTTACACGTCTACTGAGACAGATGCTAGTGCAGATCGGAGTACTGAGCA
                      ____________________________________________________________
consensus             TGTTTCTTCCAGTTACACGTCTACTGAGACAGATGCTAGTGCAGATCGGAGTACTGAGCA
 
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rJMFF005P20+          GCAAGCTCTCCTCATGGAATCTAAGAGACAAGAGGTAGTGCTTTTGGACAATGAGATTTC
                      ____________________________________________________________
consensus             GCAAGCTCTCCTCATGGAATCTAAGAGACAAGAGGTAGTGCTTTTGGACAATGAGATTTC
 
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rJMFF005P20+          CTTTAACGAGGCTATCATAGAGGAGAGAGATCAAGGGATACAAGAAATACAGCATCAGAT
                      ____________________________________________________________
consensus             CTTTAACGAGGCTATCATAGAGGAGAGAGATCAAGGGATACAAGAAATACAGCATCAGAT
 
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rJMFF005P20+          TGGTGAAGTAAGCGAAATTTTCAAGGATCTTGCTGTACTAGTTCACGATCAAGGAGCCAT
                      ____________________________________________________________
consensus             TGGTGAAGTAAGCGAAATTTTCAAGGATCTTGCTGTACTAGTTCACGATCAAGGAGCCAT
 
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rJMFF005P20+          GATCGTCGATATTGATACAAATATTGAGAACTCTCACGCTGCAACTGCCCAAGCAAAATC
                      ____________________________________________________________
consensus             GATCGTCGATATTGATACAAATATTGAGAACTCTCACGCTGCAACTGCCCAAGCAAAATC
 
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rJMFF005P20+          CCAACTTTCCAAAGCTGCAAAATCACAACGATCAAATTCCTCCCTGATGTGCCTACTCCT
                      ____________________________________________________________
consensus             CCAACTTTCCAAAGCTGCAAAATCACAACGATCAAATTCCTCCCTGATGTGCCTACTCCT
 
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rJMFF005P20+          GGTGATATTCGCTGTTGTCCTCATCATCGTGATCATAGTACTTGCAGCATGAACACTCGG
                      ____________________________________________________________
consensus             GGTGATATTCGCTGTTGTCCTCATCATCGTGATCATAGTACTTGCAGCATGAACACTCGG
 
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rJMFF005P20+          CCACGAGACGTTGAATAAAAACCTTGGAACTCTGCTCAGCAATGGAGGCAGAATGCAGTT
                      ____________________________________________________________
consensus             CCACGAGACGTTGAATAAAAACCTTGGAACTCTGCTCAGCAATGGAGGCAGAATGCAGTT
 
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rJMFF005P20+          TTGGCAATTTTGGAAACCTGATACTAGTTTGTTCATTTTTGGAGTTGCTGTTCATTTGTA
                      ____________________________________________________________
consensus             TTGGCAATTTTGGAAACCTGATACTAGTTTGTTCATTTTTGGAGTTGCTGTTCATTTGTA
 
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rJMFF005P20+          AATTCTTTGGTTTGTGATTCCATGTGTTCTTTTTGCCACGTGGCAATGTCTGTCAATAAA
                      ____________________________________________________________
consensus             AATTCTTTGGTTTGTGATTCCATGTGTTCTTTTTGCCACGTGGCAATGTCTGTCAATAAA