Contig 009612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005M08Sequence492003179 (4)gb|ACQ44244.1|3e-77chlorophyll synthase [Nicotiana tabacum]479009612 (4)ref|XP_009376426.1|1e-51PREDICTED: chlorophyll synthase, chloroplastic-like isoform X1 [Pyrus x bretsch
JMFF005N08Sequence553003179 (4)ref|XP_009762729.1|1e-93PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris]791009612 (4)ref|XP_009606938.1|1e-85PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]
JMFF020K13Sequence558003179 (4)ref|XP_009762729.1|2e-78PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris]692009612 (4)ref|XP_009606938.1|6e-61PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]
JMFF025H15Sequence558003179 (4)gb|ACQ44244.1|2e-93chlorophyll synthase [Nicotiana tabacum]792009612 (4)ref|XP_009606938.1|1e-85PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF025H15+                                                         AGCTCAAACAAAA
rJMFF005N08+                                                           CTCAAACAAAA
                      ____________________________________________________________
consensus                                                            AGCTCAAACAAAA
 
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rJMFF025H15+          TGGATGGATTGGCAACTTTGCTTTAGGGTCGAGCTACATCAGTTTGCCTTGGTGGGCTGG
rJMFF005N08+          TGGATGGATTGGCAACTTTGCTTTAGGGTCGAGCTACATCAGTTTGCCTTGGTGGGCTGG
                      ____________________________________________________________
consensus             TGGATGGATTGGCAACTTTGCTTTAGGGTCGAGCTACATCAGTTTGCCTTGGTGGGCTGG
 
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rJMFF020K13+                                    CCGATGTTATTGTTCTAACACTCTTGTATAGCAT
rJMFF025H15+          TCAAGCTTTGTTTGGGACCCTCACACCCGATGTTATTGTTCTAACACTCTTGTATAGCAT
rJMFF005N08+          TCAAGCTTTGTTTGGGACCCTCACACCCGATGTTATTGTTCTAACACTCTTGTATAGCAT
                      ____________________________________________________________
consensus             TCAAGCTTTGTTTGGGACCCTCACACCCGATGTTATTGTTCTAACACTCTTGTATAGCAT
 
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rJMFF020K13+          TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
rJMFF005M08+                     GTATTGCTATTGTAAANGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
rJMFF025H15+          TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
rJMFF005N08+          TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
                      ____________________________________________________________
consensus             TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
 
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rJMFF020K13+          GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
rJMFF005M08+          GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
rJMFF025H15+          GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
rJMFF005N08+          GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
                      ____________________________________________________________
consensus             GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
 
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rJMFF020K13+          TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
rJMFF005M08+          TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTNGGGAAACCATA
rJMFF025H15+          TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
rJMFF005N08+          TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
                      ____________________________________________________________
consensus             TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
 
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rJMFF020K13+          TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
rJMFF005M08+          TTACGCATTAGCCCTCCTAGGTCTANCAGCACCACAGATNTTTTTCCAGTTCAAATACTT
rJMFF025H15+          TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
rJMFF005N08+          TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
                      ____________________________________________________________
consensus             TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
 
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rJMFF020K13+          CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
rJMFF005M08+          CCTAAAAGACCCCGTCAAATANGATGTGAAGTATCAGGCTAGTGCACAACCGTTTNTTGT
rJMFF025H15+          CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
rJMFF005N08+          CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
                      ____________________________________________________________
consensus             CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
 
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rJMFF020K13+          ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
rJMFF005M08+          ACTNGGTCTNTTAGTTTCTGCATTANCCACGAGCCATNGATCTCCAGATGCNTTNGTNAC
rJMFF025H15+          ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
rJMFF005N08+          ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
                      ____________________________________________________________
consensus             ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
 
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rJMFF020K13+          AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
rJMFF005M08+          AATATCGGGAGAGATAACGCAATGTCATCATCCNGGAGGGATGAGCACTATAGTCAAAGA
rJMFF025H15+          AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
rJMFF005N08+          AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
                      ____________________________________________________________
consensus             AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
 
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rJMFF020K13+          GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
rJMFF005M08+          GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGCAGGATGTGGTAAAC
rJMFF025H15+          GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
rJMFF005N08+          GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
                      ____________________________________________________________
consensus             GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
 
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rJMFF020K13+          TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
rJMFF005M08+          TAGGGTAAAT                                                  
rJMFF025H15+          TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
rJMFF005N08+          TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
                      ____________________________________________________________
consensus             TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
 
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rJMFF020K13+          TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
rJMFF025H15+          TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
rJMFF005N08+          TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
                      ____________________________________________________________
consensus             TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
 
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rJMFF020K13+          AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATT         
rJMFF025H15+          AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATT         
rJMFF005N08+          AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATTTAATCAAGT
                      ____________________________________________________________
consensus             AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATTTAATCAAGT