| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005J21 | Sequence | 488 | 009611 (4) | gb|KHN24243.1| | 1e-45 | Protein BREVIS RADIX, partial [Glycine soja] | 712 | 009611 (4) | ref|XP_010320065.1| | 4e-42 | PREDICTED: uncharacterized protein LOC101260719 isoform X2 [Solanum lycopersicu |
| JMSF008P09 | Sequence | 263 | 017761 | ref|XP_009775743.1| | 164 | PREDICTED: uncharacterized protein LOC104225600 [Nicotiana sylvestris] | 706 | 009611 (4) | ref|XP_010320065.1| | 9e-44 | PREDICTED: uncharacterized protein LOC101260719 isoform X2 [Solanum lycopersicu |
| JMSF040E22 | Sequence | 284 | 000903 (3) | 846 | 009611 (4) | emb|CDP18270.1| | 8e-66 | unnamed protein product [Coffea canephora] | |||
This contig is upended
. : . : . : . : . : . :
JMFF005J21- TTAAGCAACACCAATACCTACA
____________________________________________________________
consensus TTAAGCAACACCAATACCTACA
. : . : . : . : . : . :
JMFF005J21- ACGTCAGGGCTTTCGTTCTCGAAAAGCATTGCAGACAGTCTGAAGAAGAATAACGAATTG
____________________________________________________________
consensus ACGTCAGGGCTTTCGTTCTCGAAAAGCATTGCAGACAGTCTGAAGAAGAATAACGAATTG
. : . : . : . : . : . :
JMFF005J21- CTAAATCAAGAAATTCATAAGTTGCGAGCACAGGTCGAGAACCTCAGACATCGATGCGAA
____________________________________________________________
consensus CTAAATCAAGAAATTCATAAGTTGCGAGCACAGGTCGAGAACCTCAGACATCGATGCGAA
. : . : . : . : . : . :
JMFF005J21- CTCCAAGAATTGGATCTTCAAAAATCAACGAAAAACGCTCAGGAAGCAATGTTTCTAGCT
____________________________________________________________
consensus CTCCAAGAATTGGATCTTCAAAAATCAACGAAAAACGCTCAGGAAGCAATGTTTCTAGCT
. : . : . : . : . : . :
JMFF005J21- GCAGAAATCTGCTAAATGTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGCT
rJMSF040E22+ GCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGCT
____________________________________________________________
consensus GCAGAAATCTGCTAAATGTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGCT
. : . : . : . : . : . :
JMFF005J21- CAAAGACATGGCCGAGAGATTGCCACCGGGGACTTATGATGCCGAGAGTTTCAAGCTACC
rJMSF040E22+ CAAAGACATGGCCGAGAGATTGCCACCGGGGACTTATGATGCCGAGAGTTTCAAGCTACC
____________________________________________________________
consensus CAAAGACATGGCCGAGAGATTGCCACCGGGGACTTATGATGCCGAGAGTTTCAAGCTACC
. : . : . : . : . : . :
JMFF005J21- TCACCTAGTTAATGGATTAGAGCCGAGCAATCTTAACTGTGGTGATTCAAACGGGGAGCG
rJMSF040E22+ TCACCTAGTTAATGGATTAGAGCCGAGCAATCTTAACTGTGGTGATTCAAACGGGGAGCA
rJMSF008P09+ TCAAACGGGGAGCA
____________________________________________________________
consensus TCACCTAGTTAATGGATTAGAGCCGAGCAATCTTAACTGTGGTGATTCAAACGGGGAGCA
. : . : . : . : . : . :
JMFF005J21- TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
rJMSF040E22+ TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
rJMSF008P09+ TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
rJMFF005J21+ GATTTGACTCGGTTGCCAGCATAGACNCCGACGGGAATGGAGTAGGGAGTCA
____________________________________________________________
consensus TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
. : . : . : . : . : . :
JMFF005J21- CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAG
rJMSF040E22+ CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
rJMSF008P09+ CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
rJMFF005J21+ CGGGGATTTTGGAACTTACGAGGNTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
____________________________________________________________
consensus CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
. : . : . : . : . : . :
rJMSF040E22+ CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATCTTCCCGAACG
rJMSF008P09+ CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATCTTCCCGAACG
rJMFF005J21+ CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATNTTCCCGAACG
____________________________________________________________
consensus CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATCTTCCCGAACG
. : . : . : . : . : . :
rJMSF040E22+ AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTCTGCTGCTCTTGGCAA
rJMSF008P09+ AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTCTGCTGCTCTTGGCAA
rJMFF005J21+ AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTNTGCTGCTNTTGGCAA
____________________________________________________________
consensus AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTCTGCTGCTCTTGGCAA
. : . : . : . : . : . :
rJMSF040E22+ TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
rJMSF008P09+ TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
rJMFF005J21+ TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
____________________________________________________________
consensus TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
. : . : . : . : . : . :
rJMSF040E22+ AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTCGTAGAAGATT
rJMSF008P09+ AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTCGTAGAAGATT
rJMFF005J21+ AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTNGTAGAAGATT
____________________________________________________________
consensus AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTCGTAGAAGATT
. : . : . : . : . : . :
rJMSF040E22+ CGGGGAGCACCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
rJMSF008P09+ CGGGGAGCACCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
rJMFF005J21+ CGGGGAGCNCCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
____________________________________________________________
consensus CGGGGAGCACCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
. : . : . : . : . : . :
rJMSF040E22+ CAACGTTAGAGGATCCGACATGTCTTCGGCTTCCAGCCACGTTTCTCGAAGGTCAGGACC
rJMSF008P09+ CAACGTTAGAGGATCCGACATGTCTTCGGCTTCCAGCCACGTTTCTCGAAGGTCAGGACC
rJMFF005J21+ CAACGTTAGAGGATCCGACATGTNTTCGGCTTCCAGCCACGTTTNTNGAAGGTCAGGACC
____________________________________________________________
consensus CAACGTTAGAGGATCCGACATGTCTTCGGCTTCCAGCCACGTTTCTCGAAGGTCAGGACC
. : . : . : . : . : . :
rJMSF040E22+ GCTCTCTTCGCCCTCCCAAAGCTAAGAAAAAATTAGCAGAGATCTTACTTCTAAACAGGT
rJMSF008P09+ GCTCTCTTCGCCCTCCCAAAGCTAAGAAAAAATTAGCAGAGATCTTACTTCTAAACAGGT
rJMFF005J21+ GCTNTTTTCGCCCTCCCAAAGNTAAGAAAAAATTAGCAGAGATNTTACTTTTAAACAGGT
____________________________________________________________
consensus GCTCTCTTCGCCCTCCCAAAGCTAAGAAAAAATTAGCAGAGATCTTACTTCTAAACAGGT
. : . : . : . : . : . :
rJMSF040E22+ GTGCTCTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTCTTTTTCCTTTCCCAAT
rJMSF008P09+ GTGCTCTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTCTTTTTCCTTTCCCAAT
rJMFF005J21+ GTGCTNTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTNTTTTTCCTTTCCCAAT
____________________________________________________________
consensus GTGCTCTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTCTTTTTCCTTTCCCAAT
. : . : . : . : . : . :
rJMSF040E22+ TTTATAA-TTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
rJMSF008P09+ TTTATAA-TTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
rJMFF005J21+ TTTATAATTTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
____________________________________________________________
consensus TTTATAA-TTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
. : . : . : . : . : . :
rJMSF040E22+ GGCCATTGTATTCTACTGTATATAATATCATC
rJMSF008P09+ GGCCATTGTATTCTACTGTATATAATATCATC
rJMFF005J21+ GGCCATTGTATTCTACTGTATATAATATCATCAATTGTTGTATTCATTGGAAAAAAAAAG
____________________________________________________________
consensus GGCCATTGTATTCTACTGTATATAATATCATCAATTGTTGTATTCATTGGAAAAAAAAAG