Contig 009604:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003P08Sequence108010686 (8)744009604 (2)ref|XP_009625232.1|9e-44PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X3 [Nicotiana tome
JMSF022B18Sequence601010686 (8)ref|XP_009607722.1|8e-26PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like isoform X1 [Nicotiana762009604 (2)ref|XP_009625232.1|7e-66PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X3 [Nicotiana tome

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022B18+ TGC
                      ____________________________________________________________
consensus TGC
 
. : . : . : . : . : . :
rJMSF022B18+ CGTAAATATGATCAATGTTGATAGCATGAATGTGTTTTGTGTTACGGGCAGTGGTCATGG
                      ____________________________________________________________
consensus CGTAAATATGATCAATGTTGATAGCATGAATGTGTTTTGTGTTACGGGCAGTGGTCATGG
 
. : . : . : . : . : . :
rJMSF022B18+ CCTAAGAGAGACTCTGTTCTATAACCTCTTTTCAAACGTACAAGTGTACAAAACAAGGTT
rJMFF003P08+ ACGTACAAGTGTACAAANCAAGGTT
                      ____________________________________________________________
consensus CCTAAGAGAGACTCTGTTCTATAACCTCTTTTCAAACGTACAAGTGTACAAAACAAGGTT
 
. : . : . : . : . : . :
rJMSF022B18+ GGAGATGCTTCGTGCTCTCCCTTGTATAAGCACCGGAGCAGTATCTTTGGATGGTGGGAT
rJMFF003P08+ GGAGATGCTTCGTGCTCTCCCTTGTATAAGCACCGGAGCAGTATCTTTGGATGGTGGGAT
                      ____________________________________________________________
consensus GGAGATGCTTCGTGCTCTCCCTTGTATAAGCACCGGAGCAGTATCTTTGGATGGTGGGAT
 
. : . : . : . : . : . :
rJMSF022B18+ GATAAAAACGCCTGGCATTTTTTCCCTGGGAAATAGGGATGTAGGTGTGAAATTTCCCAA
rJMFF003P08+ GATAAAAACGCCTGGCATTTTTTCCCTGGGAAATAGGGATGTAGGTGTGAAATTTCCCAA
                      ____________________________________________________________
consensus GATAAAAACGCCTGGCATTTTTTCCCTGGGAAATAGGGATGTAGGTGTGAAATTTCCCAA
 
. : . : . : . : . : . :
rJMSF022B18+ GAGCTTTGGAAGGCCAATTCCACCTCAGCACTATTTCCAAATCGAAAATAAACTAAAGGA
rJMFF003P08+ GAGCTTTGGAAGGCCAATTCCACCTCAGCACTATTTCCAAATCGAAAATAAACTAAAGGA
                      ____________________________________________________________
consensus GAGCTTTGGAAGGCCAATTCCACCTCAGCACTATTTCCAAATCGAAAATAAACTAAAGGA
 
. : . : . : . : . : . :
rJMSF022B18+ AACTAAATGGGAAAAAGAAAGAATTATGGAAGATATGCAGAGAGTACAAGCATTGCTGGA
rJMFF003P08+ AACTAAATGGGAAAAAGAAAGAATTATGGAAGATATGCAGAGAGTACAAGCATTGCTGGA
                      ____________________________________________________________
consensus AACTAAATGGGAAAAAGAAAGAATTATGGAAGATATGCAGAGAGTACAAGCATTGCTGGA
 
. : . : . : . : . : . :
rJMSF022B18+ TCATGCCCGGTTCAACTTTGAAGTAAAGAAACAAGAGTTTATCAAGCATCTCGCTCAGAG
rJMFF003P08+ TCATGCCCGGTTCAACTTTGAAGTAAAGAAACAAGAGTTTATCAAGCATCTCGCTCAGAG
                      ____________________________________________________________
consensus TCATGCCCGGTTCAACTTTGAAGTAAAGAAACAAGAGTTTATCAAGCATCTCGCTCAGAG
 
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rJMSF022B18+ CTCATCATATCAAACTCAGATGCAGATCTAGTTTTGGAGGATAGCGGTNGTAGCATGTTG
rJMFF003P08+ CTCATCATATCAAACTCAGATGCAGATCTAGTTTTGGAGGATAGCGGTTGTAGCATGTTG
                      ____________________________________________________________
consensus CTCATCATATCAAACTCAGATGCAGATCTAGTTTTGGAGGATAGCGGTTGTAGCATGTTG
 
. : . : . : . : . : . :
rJMSF022B18+ TGGTGTATAGAAGATGGAAGCTCAACAAGTATCTTGCAACTTCAGCTTCAATCTCAGCAT
rJMFF003P08+ TGGTGTATAGAAGATGGAAGCTCAACAAGTATCTTGCAACTTCAGCTTCAATCTCAGCAT
                      ____________________________________________________________
consensus TGGTGTATAGAAGATGGAAGCTCAACAAGTATCTTGCAACTTCAGCTTCAATCTCAGCAT
 
. : . : . : . : . : . :
rJMSF022B18+ AGTTTTCTTCAGTGTATGTAATATGTCGATTAGAGCCCGGTTTAGTCGATCGCTGGCTGA
rJMFF003P08+ AGTTTTCTTCAGTGTATGTAATATGTCGATTAGAGCCCGGTTTAGTCGATCGCTGGCTGA
                      ____________________________________________________________
consensus AGTTTTCTTCAGTGTATGTAATATGTCGATTAGAGCCCGGTTTAGTCGATCGCTGGCTGA
 
. : . : . : . : . : . :
rJMSF022B18+ TTCGAGCATCAAACCTGTGCAATTGTGCTAATTTTTTCATACATCAATATTGTCCATTTT
rJMFF003P08+ TTCGAGCATCAAACCTGTGCAATTGTGCTAATTTTTTCATACATCAATATTGTCCATTTT
                      ____________________________________________________________
consensus TTCGAGCATCAAACCTGTGCAATTGTGCTAATTTTTTCATACATCAATATTGTCCATTTT
 
. : . : . : . : . : . :
rJMSF022B18+ ATGCTACGGATGGTGTCTGTAACTCTGCCAACTTTNTGACAGTTGTTTTGTTAACCCCAA
rJMFF003P08+ ATGCTA-GGATGGTGTCTGTAACTCTGCCAACTTTTTGACAGTTGTTTTGTTAACCCCAA
                      ____________________________________________________________
consensus ATGCTACGGATGGTGTCTGTAACTCTGCCAACTTTTTGACAGTTGTTTTGTTAACCCCAA
 
. : . : . : . : . : . :
rJMSF022B18+ TTGGTTGTGCCCTAGATGTAACTGTACAAACTGCTGCAT
rJMFF003P08+ TTGGTTGTGCCCTAGATGTAACTGTACAAACTGCTGCATAACTGCATCTTTGTTAGACTG
                      ____________________________________________________________
consensus TTGGTTGTGCCCTAGATGTAACTGTACAAACTGCTGCATAACTGCATCTTTGTTAGACTG
 
. : . : . : . : . : . :
rJMFF003P08+ GCTGAACTAGAAAAGTTTGCTTGTTTCATGCTTTCAACGTCCGGGAATCATTAACAAACT
                      ____________________________________________________________
consensus GCTGAACTAGAAAAGTTTGCTTGTTTCATGCTTTCAACGTCCGGGAATCATTAACAAACT