| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001J16 | Sequence | 527 | 021636 | ref|XP_010648365.1| | 2e-06 | PREDICTED: probable protein phosphatase 2C 53 [Vitis vinifera] ref|XP_010648366. | 778 | 009597 (4) | ref|XP_004245071.1| | 1e-95 | PREDICTED: probable protein phosphatase 2C 6 [Solanum lycopersicum] |
| JMFF043L21 | Sequence | 620 | 021708 | ref|XP_009798001.1| | 1e-13 | PREDICTED: probable protein phosphatase 2C 6 isoform X1 [Nicotiana sylvestris] | 592 | 009597 (4) | ref|XP_004245071.1| | 1e-61 | PREDICTED: probable protein phosphatase 2C 6 [Solanum lycopersicum] |
| JMFS071F02 | Sequence | 626 | 009597 (4) | ref|XP_004245071.1| | 5e-98 | PREDICTED: probable protein phosphatase 2C 6 [Solanum lycopersicum] | |||||
| JMSF022A18 | Sequence | 665 | 007960 (3) | ref|XP_009140518.1| | 54.3 | PREDICTED: QWRF motif-containing protein 4-like [Brassica rapa] | 136 | 009597 (4) | |||
This contig is upended
. : . : . : . : . : . :
JMFS071F02- AA
____________________________________________________________
consensus AA
. : . : . : . : . : . :
JMFS071F02- GAACCCATGGCATTATCGGTGGATCATAAACCAAACCGAGAGGATGAATATGCAAGGATT
rJMFF001J16+ CCCATGGCATTATCGGTGGATCATAAACCAACCCGAGAGGATGAATATGCAAGGATT
____________________________________________________________
consensus GAACCCATGGCATTATCGGTGGATCATAAACCAACCCGAGAGGATGAATATGCAAGGATT
. : . : . : . : . : . :
JMFS071F02- GAAGCAGCTGGCGGGAAAGTAATACAGTGGAATGGACATCGTGTCTTTGGCGTTCTTGCA
rJMFF001J16+ GAAGCAGCTGGCGGGAAAGTAATACAGTGGAATGGACATCGTGTCTTTGGCGTTCTTGCA
____________________________________________________________
consensus GAAGCAGCTGGCGGGAAAGTAATACAGTGGAATGGACATCGTGTCTTTGGCGTTCTTGCA
. : . : . : . : . : . :
JMFS071F02- ATGTCAAGGTCCATAGGAGATAGATATTTGAAACCTTGGATTATTCCTGATCCGGAAGTG
rJMFF043L21+ GTCCATAGGAGATAGATATTTGAAACCTTGGATTATTCCTGATCCGGAAGTG
rJMFF001J16+ ATGTCAAGGTCCATAGGAGATAGATATTTGAAACCTTGGATTATTCCTGATCCGGAAGTG
____________________________________________________________
consensus ATGTCAAGGTCCATAGGAGATAGATATTTGAAACCTTGGATTATTCCTGATCCGGAAGTG
. : . : . : . : . : . :
JMFS071F02- ATGTTTATTCCTCGCACTAAAGATGATGACTGCCTGATTCTGGCCAGTGATGGTTTATGG
rJMFF043L21+ ATGTTATTTCCTCGCACTAAAGATGATGACTGCCTGATTCTGGCCAGTGATGGTTTATGG
rJMFF001J16+ ATGTTTATTCCTCGCACTAAAGATGATGACTGCCTGATTCTGGCCAGTGATGGTTTATGG
____________________________________________________________
consensus ATGTTTATTCCTCGCACTAAAGATGATGACTGCCTGATTCTGGCCAGTGATGGTTTATGG
. : . : . : . : . : . :
JMFS071F02- GATGTAATGACGAATGAAGAAGTTTGCGACTTGGCACGTAAGCGCATACTCCAATGGCAT
rJMFF043L21+ GATGTAATGACGAATGAAGAAGTTTGCGACTTGGCACGTAAGCGCATACTCCAATGGCAT
rJMFF001J16+ GATGTAATGACGAATGAAGAAGTTTGCGACTTGGCACGTAAGCGCATACTCCAATGGCAT
____________________________________________________________
consensus GATGTAATGACGAATGAAGAAGTTTGCGACTTGGCACGTAAGCGCATACTCCAATGGCAT
. : . : . : . : . : . :
JMFS071F02- AGAAAGTACGGTATGACTCTCCCCTCGGAGAGAGGTGAAGGAACCGATCCTGCAGCTCAA
rJMFF043L21+ AGAAAGTACGGTATGACTCTCCCCTCGGAGAGAGGTGAAGGAACCGATCCTGCAGCTCAA
rJMFF001J16+ AGAAAGTACGGTATGACTCTCCCCTCGGAGAGAGGTGAAGGAACCGATCCTGCAGCTCAA
____________________________________________________________
consensus AGAAAGTACGGTATGACTCTCCCCTCGGAGAGAGGTGAAGGAACCGATCCTGCAGCTCAA
. : . : . : . : . : . :
JMFS071F02- TCAGCAGCTGAGTACCTATCAAACCGAGCTCTCCAAAAGGGCAGCAAGGACAACATAACC
rJMFF043L21+ TCAGCAGCTGAGTACCTATCAAACCGAGCTCTCCAAAAGGGCAGCAAGGACAACATAACC
rJMFF001J16+ TCAGCAGCTGAGTACCTATCAAACCGAGCTCTCCAAAAGGGCAGCAAGGACAACATAACC
____________________________________________________________
consensus TCAGCAGCTGAGTACCTATCAAACCGAGCTCTCCAAAAGGGCAGCAAGGACAACATAACC
. : . : . : . : . : . :
JMFS071F02- GTGATTGTGGTGGACTTGAAAGCTCAACGAAAGGTTAAGAACAAAACCTGACCATAGCCT
rJMFF043L21+ GTGATTGTGGTGGACTTGAAAGCTCAACGAAAGGTTAAGAACAAAACCTGACCATAGCCT
rJMFF001J16+ GTGATTGTGGTGGACTTGAAAGCTCAACGAAAGGTTAAGAACAAAACCTGACCATAGCCT
____________________________________________________________
consensus GTGATTGTGGTGGACTTGAAAGCTCAACGAAAGGTTAAGAACAAAACCTGACCATAGCCT
. : . : . : . : . : . :
JMFS071F02- TTTATCTATCCTTCAGCTGTTACGTTTCATTTCTAGGTTTGCACTATAAACTTCACACAG
rJMFF043L21+ TTTATCTATCCTTCAGCTGTTACGTTTCATTTCTAGGTTTGCACTATAAACTTCACACAG
rJMFF001J16+ TTTATCTATCCTTCAGCTGTTACGTTTCATTTCTAGGTTTGCACTATAAACTTCACACAG
____________________________________________________________
consensus TTTATCTATCCTTCAGCTGTTACGTTTCATTTCTAGGTTTGCACTATAAACTTCACACAG
. : . : . : . : . : . :
JMFS071F02- TCTGCCCCTGCTGTTTTTCACCCGGGATGATGATGATGATGATGGCTTCACGTAGATAAC
rJMFF043L21+ TCTGCCCCTGCTGTTTTTCACCCGGGATGATGATGATGATGATGGCTTCACGTAGTTAAC
rJMFF001J16+ TCTGCCCCTGCTGTTTTTCACCCGGGATGATGATGATGATGATGGCTTCACGTAGTTAAC
____________________________________________________________
consensus TCTGCCCCTGCTGTTTTTCACCCGGGATGATGATGATGATGATGGCTTCACGTAGTTAAC
. : . : . : . : . : . :
JMFS071F02- ATTCTGTAGGTATGCTCTTTCCTG
rJMFF043L21+ ATTCTGTAGGTATGCTCTTTCCTGTACGTATTTTTTTCTTCTACATTTAGCTACTCGGAG
rJMSF022A18+ TACATTTAGCTACTCGGAG
rJMFF001J16+ ATTCTGTAGGTATGCTCTTTCCTGTACGTATTTTTTTCTTCTACATTTAGCTACTCGGAG
____________________________________________________________
consensus ATTCTGTAGGTATGCTCTTTCCTGTACGTATTTTTTTCTTCTACATTTAGCTACTCGGAG
. : . : . : . : . : . :
rJMFF043L21+ TAGTAGATCGAAATATAAAGCCATTCGTAAATGTACCACTTTGGGGGAGCAATTTACATA
rJMSF022A18+ TNGNAGATCGAAATATAAAGCCATTCGTAAATGTACCACTTTGGGGGAGCAATTTACATA
rJMFF001J16+ TAGTAGATCGAAATATAAAGCCATTCGTAAATGTACCACTTTGGGGGAGCAATTTACATA
____________________________________________________________
consensus TAGTAGATCGAAATATAAAGCCATTCGTAAATGTACCACTTTGGGGGAGCAATTTACATA
. : . : . : . : . : . :
rJMSF022A18+ TAAACGGTTATTATGCCTCCGAGTTAAAAGGCGTCGGGNAGGTGCATACCTCGT
rJMFF001J16+ TAAACGGTTATTATGCCTCCGAGTTAAAAGGCGTCGGGGAGGTGTTTACCTCGTATTGCT
____________________________________________________________
consensus TAAACGGTTATTATGCCTCCGAGTTAAAAGGCGTCGGGGAGGTGTTTACCTCGTATTGCT