Contig 009595:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001F13Sequence500009595 (2)ref|XP_009766983.1|4e-43PREDICTED: RING-H2 finger protein ATL67-like [Nicotiana sylvestris]589009595 (2)ref|XP_009597583.1|7e-60PREDICTED: RING-H2 finger protein ATL67-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF001F13-                                                        ATTTTCACCCTTCCA
                      ____________________________________________________________
consensus                                                          ATTTTCACCCTTCCA
 
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JMFF001F13-           TCATCATCATCATCTTCTTCCACTTCCAATGACAATCCCCTCTTTATACGCCGCCGCTCC
                      ____________________________________________________________
consensus             TCATCATCATCATCTTCTTCCACTTCCAATGACAATCCCCTCTTTATACGCCGCCGCTCC
 
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JMFF001F13-           TCCTCCTCCTCCTCCGTTAACAACCGTCAAGCCTAATTCTGCCCCCACTAACTTCACCAC
                      ____________________________________________________________
consensus             TCCTCCTCCTCCTCCGTTAACAACCGTCAAGCCTAATTCTGCCCCCACTAACTTCACCAC
 
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JMFF001F13-           CATCGGTCTTGGCTACGCCATCGCTATCGCCTTTGGCTTCCTCGTCCTCTTCTCCACCGT
                      ____________________________________________________________
consensus             CATCGGTCTTGGCTACGCCATCGCTATCGCCTTTGGCTTCCTCGTCCTCTTCTCCACCGT
 
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JMFF001F13-           CCTTCTCGCTTCCTACATCTGCTGCCGCTCCATCGCCGCCCGCCGTCGTCGCCGCCGCCT
rJMFF001F13+                     CCTACATCTGCTGCCGCTCCATCGCCGCCCGCCGTCGTCGCCGCCGCCT
                      ____________________________________________________________
consensus             CCTTCTCGCTTCCTACATCTGCTGCCGCTCCATCGCCGCCCGCCGTCGTCGCCGCCGCCT
 
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JMFF001F13-           CGATGCGGAAGCTGGGTACCGTAATTCTCACCCGGACGACAACGGGGTGTACCTTCCGCG
rJMFF001F13+          CGATGCGGAAGCTGGGTACCGTAATTCTCACCCGGACGACAACGGGGTGTACCTTCCGCG
                      ____________________________________________________________
consensus             CGATGCGGAAGCTGGGTACCGTAATTCTCACCCGGACGACAACGGGGTGTACCTTCCGCG
 
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JMFF001F13-           TATAATCTTCGTGGCGGAAGACGACGAGGAAAACGACGGCGTTTCTGGGCAAAACGTGGC
rJMFF001F13+          TATAATCTTCGTGGCGGAAGACGACGAGGAAAACGACGGCGTTTCTGGGCAAAACGTGGC
                      ____________________________________________________________
consensus             TATAATCTTCGTGGCGGAAGACGACGAGGAAAACGACGGCGTTTCTGGGCAAAACGTGGC
 
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JMFF001F13-           CCTTGGGCTGGACCAGGCGGTGATCAACTCCTACCCGAAGCTGGTGTACTCCAAGAGGAG
rJMFF001F13+          CCTTGGGCTGGACCAGGCGGTGATCAACTCCTACCCGAAGCTGGTGTACTCCAAGAGGAG
                      ____________________________________________________________
consensus             CCTTGGGCTGGACCAGGCGGTGATCAACTCCTACCCGAAGCTGGTGTACTCCAAGAGGAG
 
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JMFF001F13-           CGGGAATCCGGGTGGGACCACCGGAAATGACACGTTGTGCTCCATATGTCTGTGCGAGTA
rJMFF001F13+          CGGGAATCCGGGTGGGACCACCGGAAATGACACGTTGTGCTCCATATGTCTGTGCGAGTA
                      ____________________________________________________________
consensus             CGGGAATCCGGGTGGGACCACCGGAAATGACACGTTGTGCTCCATATGTCTGTGCGAGTA
 
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JMFF001F13-           CAAGG                                                       
rJMFF001F13+          CAAGGATTCGGAGATGCTGAGGATGCTGCCGGATTGTAAACATTACTTTCACGTGACCTG
                      ____________________________________________________________
consensus             CAAGGATTCGGAGATGCTGAGGATGCTGCCGGATTGTAAACATTACTTTCACGTGACCTG
 
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rJMFF001F13+          CGTGGACGCGTGGCTGAAGCTGAACGCGTCGTGCCCCGTGTGCCGGAACTCTCCCTTGCC
                      ____________________________________________________________
consensus             CGTGGACGCGTGGCTGAAGCTGAACGCGTCGTGCCCCGTGTGCCGGAACTCTCCCTTGCC
 
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rJMFF001F13+          GACGCCGCTGTCCACGCCGTTGTCGGAGGTGGTCCCGCTTTCACACTACTCCGATGGACG
                      ____________________________________________________________
consensus             GACGCCGCTGTCCACGCCGTTGTCGGAGGTGGTCCCGCTTTCACACTACTCCGATGGACG
 
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rJMFF001F13+          GCGAAGGCAATGATTATGGATTGATTTTTGGTTAGTGTAGGAGGTTGAATTATTTTTGTT
                      ____________________________________________________________
consensus             GCGAAGGCAATGATTATGGATTGATTTTTGGTTAGTGTAGGAGGTTGAATTATTTTTGTT
 
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rJMFF001F13+          TTTTGAATTCACTGTGGAAATTCTTGTTATTTAGTGGTGTTAATTAAGGAGGAGATTGAT
                      ____________________________________________________________
consensus             TTTTGAATTCACTGTGGAAATTCTTGTTATTTAGTGGTGTTAATTAAGGAGGAGATTGAT