clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008I13 | Sequence | 501 | 009588 (3) | ref|XP_009623706.1| | 2e-45 | PREDICTED: probable glutamate carboxypeptidase 2 [Nicotiana tomentosiformis] | 767 | 012244 (3) | emb|CDP10550.1| | 8e-47 | unnamed protein product [Coffea canephora] |
JMFF009D12 | Sequence | 502 | 009588 (3) | ref|XP_009623706.1| | 3e-44 | PREDICTED: probable glutamate carboxypeptidase 2 [Nicotiana tomentosiformis] | 727 | 012244 (3) | emb|CDP10550.1| | 2e-45 | unnamed protein product [Coffea canephora] |
JMSF052M02 | Sequence | 650 | 009588 (3) | ref|XP_009623706.1| | 7e-45 | PREDICTED: probable glutamate carboxypeptidase 2 [Nicotiana tomentosiformis] | 816 | 012244 (3) | emb|CDP10550.1| | 2e-47 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFF008I13+ GTGGTTCAGGAACGCGGCCTTGCCGTACGCGGAGCCCGAGGGGGAGTAAG
JMFF009D12+ CCGTGGTTCAGGAACGCGGCCTTGCCGTACGCGGAGCCCGAGGGGGAGTAAG
JMSF052M02+ GTGGTTCAGGAACGCGNCCTTGCCGTACGCGGAGCCCGAGGGGGAGTAAG
____________________________________________________________
consensus CCGTGGTTCAGGAACGCGGCCTTGCCGTACGCGGAGCCCGAGGGGGAGTAAG
. : . : . : . : . : . :
JMFF008I13+ CGTGGAACGGCATTACGACGCCGTTTTCCCGGACCCCGCGCTCGGATAACGGGACGGGAA
JMFF009D12+ CGTGGAACGGCATTACGACGCCGTTTTCCCGGACCCCGCGCCCGGATAACGGGACGGGAA
JMSF052M02+ CGTGGAACGGCATTACGACGCCGTTTTCCCGGACCCCGCGCTCGGATAACGGGACGGGAA
____________________________________________________________
consensus CGTGGAACGGCATTACGACGCCGTTTTCCCGGACCCCGCGCTCGGATAACGGGACGGGAA
. : . : . : . : . : . :
JMFF008I13+ CGGCGGAGCCGTCGCCGAAATGCGCCGTCAAGGAAGAGGACACGGGGTAGGACAACAGGA
JMFF009D12+ CGGCGGAGCCGTCGCCGAAATGCGCCGTCAAGGAAGAGGACACGGGGTAGGACAACAGGA
JMSF052M02+ CGGCGGAGCCGTCGCCGAAACGCGCCGTCAAGGAAGAGGACACGGGGTAGGACAACAGGA
____________________________________________________________
consensus CGGCGGAGCCGTCGCCGAAATGCGCCGTCAAGGAAGAGGACACGGGGTAGGACAACAGGA
. : . : . : . : . : . :
JMFF008I13+ CGGTGTAGTTTGTGAAGTGGGTTGCGAGGTTGTGGGACTAGAACTGGGCCTTCACGTAAA
JMFF009D12+ CGGTGTAGTTTGTGAAGTGGGTTGCGAGGTTGTGGGACTAGAACTGGGCCTTCACGTAAA
JMSF052M02+ CGGTGTAGTTTGTGAAGTGGGTTGCGAGGTTGTGGGACTCGAACTGGGCCTTCACGTAAA
____________________________________________________________
consensus CGGTGTAGTTTGTGAAGTGGGTTGCGAGGTTGTGGGACTAGAACTGGGCCTTCACGTAAA
. : . : . : . : . : . :
JMFF008I13+ GCGCCGTTCTTAGAGACGCCGCCGTGCCGGCGAGGTGCGGTTGGAGGGTTAGTTCGCGGA
JMFF009D12+ GCGCCGTTCTTAGAGACGCCGCCGTGCCGGCGAGGTGCGGTTGGAGGGTTAGTTCGCGGA
JMSF052M02+ GCGCCGTTCTTAGAGACGCCGCCGTGCCGGCGAGGTGCGGTTGGAGGGTTAGTTCGCGGA
____________________________________________________________
consensus GCGCCGTTCTTAGAGACGCCGCCGTGCCGGCGAGGTGCGGTTGGAGGGTTAGTTCGCGGA
. : . : . : . : . : . :
JMFF008I13+ GGTAGGCGGCGATGGAGTTGTTGGAGGCGGAGGAAAGGAAAATATCTTCGTAAAAACGGA
JMFF009D12+ GGTAGGCGGCGATGGAGTTGTTGGAGGCGGAGGAAAGGAAAATATCTTCGTAAAAACGGA
JMSF052M02+ GGTAGGCGGCGATGGAGTTGTTGGAGGCGGAGGAAAGGAAAATATCTTCGTAAAAACGGA
____________________________________________________________
consensus GGTAGGCGGCGATGGAGTTGTTGGAGGCGGAGGAAAGGAAAATATCTTCGTAAAAACGGA
. : . : . : . : . : . :
JMFF008I13+ TACTTTTTTTGGCGGCAGCGGAGCCGAGGTTTTGCTCATGGCGGAGGGTGGCGAAGAAGA
JMFF009D12+ TACTTTTTTTGGCGGCAGCGGAGCCGAGGTTTTGCTCATGGCGGAGGGTGGCGAAGAAGA
JMSF052M02+ TACTTTTTTTGGCGGCAGCGGAGCCGAGGTTTTGCTCATGGCGGAGGGTGGCGAAGAAGA
____________________________________________________________
consensus TACTTTTTTTGGCGGCAGCGGAGCCGAGGTTTTGCTCATGGCGGAGGGTGGCGAAGAAGA
. : . : . : . : . : . :
JMFF008I13+ CGACTGTGAAAAGAAGGATGAGGAAAGCATACATGGATTTTGATCCAAACGGCATTTTGA
JMFF009D12+ CGACTGTGAAAAGAAGGATGAGGAAAGCATACATGGATTTTGATCCAAACGGCATTTTGA
JMSF052M02+ CGACTGTGAAAAGAAGGATGAGGAAAGCATACATGGATTTTGATCCAAACGGCATTTTGA
____________________________________________________________
consensus CGACTGTGAAAAGAAGGATGAGGAAAGCATACATGGATTTTGATCCAAACGGCATTTTGA
. : . : . : . : . : . :
JMFF008I13+ TCAGTGATGGAGGCAGTGTTTGAGATTCTT
JMFF009D12+ TCAGTGATGGAGGCAGTGTTTGAGATTCTT
JMSF052M02+ TCAGTGATGGAGGCAGTGTTTGAGATTCTTACGAGGGAGAAAACACGGAGGAGTTTAATA
____________________________________________________________
consensus TCAGTGATGGAGGCAGTGTTTGAGATTCTTACGAGGGAGAAAACACGGAGGAGTTTAATA
. : . : . : . : . : . :
JMSF052M02+ TAATAAGAAAAAGTTTGTGGCGGTGGAGATGGCGGAGGTGGCGGCGGATGCAGGTGGTGA
____________________________________________________________
consensus TAATAAGAAAAAGTTTGTGGCGGTGGAGATGGCGGAGGTGGCGGCGGATGCAGGTGGTGA
. : . : . : . : . : . :
JMSF052M02+ AAGAAAATTATTTGAAAACATCCACCGTCATCATCTTTCCTGCCCATGATAGAGTCTTAC
____________________________________________________________
consensus AAGAAAATTATTTGAAAACATCCACCGTCATCATCTTTCCTGCCCATGATAGAGTCTTAC