Contig 009586:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C20Sequence564009586 (3)ref|XP_011087403.1|8e-58PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]722012490 (4)ref|XP_009763067.1|4e-44PREDICTED: protein AUXIN RESPONSE 4 [Nicotiana sylvestris]
JMFF051F21Sequence556009586 (3)ref|XP_011087403.1|9e-57PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]496012490 (4)ref|XP_010255998.1|1e-06PREDICTED: protein AUXIN RESPONSE 4 [Nelumbo nucifera]
JMSF052I13Sequence613009586 (3)ref|XP_011087403.1|1e-57PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]919012490 (4)ref|XP_009763067.1|2e-77PREDICTED: protein AUXIN RESPONSE 4 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF031C20+                                                                   CTCT
JMSF052I13+                                                          ATCCCCACTCTCT
                      ____________________________________________________________
consensus                                                            ATCCCCACTCTCT
 
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JMFF051F21+               CCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
JMFF031C20+           TCCTCCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
JMSF052I13+           TCCTCCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
                      ____________________________________________________________
consensus             TCCTCCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
 
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JMFF051F21+           TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
JMFF031C20+           TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
JMSF052I13+           TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
                      ____________________________________________________________
consensus             TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
 
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JMFF051F21+           AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
JMFF031C20+           AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
JMSF052I13+           AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
                      ____________________________________________________________
consensus             AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
 
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JMFF051F21+           ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
JMFF031C20+           ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
JMSF052I13+           ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
                      ____________________________________________________________
consensus             ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
 
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JMFF051F21+           TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
JMFF031C20+           TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
JMSF052I13+           TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
                      ____________________________________________________________
consensus             TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
 
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JMFF051F21+           GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
JMFF031C20+           GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
JMSF052I13+           GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
                      ____________________________________________________________
consensus             GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
 
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JMFF051F21+           AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
JMFF031C20+           AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
JMSF052I13+           AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
                      ____________________________________________________________
consensus             AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
 
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JMFF051F21+           GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
JMFF031C20+           GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
JMSF052I13+           GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
                      ____________________________________________________________
consensus             GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
 
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JMFF051F21+           GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
JMFF031C20+           GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
JMSF052I13+           GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
                      ____________________________________________________________
consensus             GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
 
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JMFF051F21+           CTCTGATCAAGACTGAAGGT                                        
JMFF031C20+           CTCTGATCAAGACTGAAGGT                                        
JMSF052I13+           CTCTGATCAAGACTGAAGGTAAAGATTCGTGGGATGAAGGCCTGCACTATGAAAAAGGCC
                      ____________________________________________________________
consensus             CTCTGATCAAGACTGAAGGTAAAGATTCGTGGGATGAAGGCCTGCACTATGAAAAAGGCC