Contig 009581:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS095F09Sequence609009581 (3)ref|XP_006362577.1|1e-08PREDICTED: serine/threonine-protein kinase PRP4 homolog [Solanum tuberosum]
JMSF051G22Sequence634009581 (3)ref|XP_006362577.1|2e-09PREDICTED: serine/threonine-protein kinase PRP4 homolog [Solanum tuberosum]738009581 (3)ref|XP_009617353.1|2e-14PREDICTED: serine/threonine-protein kinase prpf4B isoform X2 [Nicotiana tomento

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-                                  TCTTCCCTCTCCCTGTCTCTATTTTTTGTTCGATCC
                      ____________________________________________________________
consensus                                     TCTTCCCTCTCCCTGTCTCTATTTTTTGTTCGATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          CTATCAATCTCTCGGCTTCCTTCCCTATACCTTTCAGCAGTCTCATGACTATGAAACCTG
                      ____________________________________________________________
consensus             CTATCAATCTCTCGGCTTCCTTCCCTATACCTTTCAGCAGTCTCATGACTATGAAACCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          TCATCTTGGCTACTATATCTGCTACGACTAGAACTGCGCTCTCTTTCTTTTTCCTTCAAA
                      ____________________________________________________________
consensus             TCATCTTGGCTACTATATCTGCTACGACTAGAACTGCGCTCTCTTTCTTTTTCCTTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          AAACCTTGGCTGCCATGGCAATAGTCTCTGATGAGTCCAGTCACTCTTTCATAATCCTTA
                      ____________________________________________________________
consensus             AAACCTTGGCTGCCATGGCAATAGTCTCTGATGAGTCCAGTCACTCTTTCATAATCCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          TCACCCTTATATTTCCTATCCTTATAAAATACACCCTCTGGCTTATGAAACACTTCTGAA
                      ____________________________________________________________
consensus             TCACCCTTATATTTCCTATCCTTATAAAATACACCCTCTGGCTTATGAAACACTTCTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          ATAGAAACCTCCTCAGAAGTGCTTTGAGATTGTGGCAATCCTCTAGACCGATCAGGTGAC
                      ____________________________________________________________
consensus             ATAGAAACCTCCTCAGAAGTGCTTTGAGATTGTGGCAATCCTCTAGACCGATCAGGTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          TTTGAATCCTTCCCATAAGGACCCTCATCTTCATATCCATCACGAGGTAATGCAACCTTG
                      ____________________________________________________________
consensus             TTTGAATCCTTCCCATAAGGACCCTCATCTTCATATCCATCACGAGGTAATGCAACCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          GCAGTCTTGCGTCTCTTCCCAGCATTGTCAGGTGTCAAAGATCTTTTCCTGTCCTTTAAA
JMFS095F09+                                                   ATCTTTTCCTGTCCTTTAAA
                      ____________________________________________________________
consensus             GCAGTCTTGCGTCTCTTCCCAGCATTGTCAGGTGTCAAAGATCTTTTCCTGTCCTTTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          TCATTTCTATCACCATAGTAATGCTTCTGTGTCCTACTTTCTTCAATAGGAGAACATTTT
JMFS095F09+           TCATTTCTATCACCATAGTAATGCTTCTGTGTCCTACTTTCTTCAATAGGAGAACATTTT
                      ____________________________________________________________
consensus             TCATTTCTATCACCATAGTAATGCTTCTGTGTCCTACTTTCTTCAATAGGAGAACATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          CCCTCATGTTTGTGGCGCTCACCGACTAAGTTCCCATTGGCAAGATATTTTTCACT-AAA
JMFS095F09+           CCCTCATGTTTGTGGCGCTCACCGACTAAGTTCCCATTGGCAAGATATTTTTCACTAAAA
JMSF051G22+                                    CTAAGTTCCCATTGGCAAGATATTTTTCACT-AAA
                      ____________________________________________________________
consensus             CCCTCATGTTTGTGGCGCTCACCGACTAAGTTCCCATTGGCAAGATATTTTTCACT-AAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          ATTCCTTCCCAACTCAACCCCTCATGATTCTTACTTCTGTCAGCTTCTTCCACTTTCTTT
JMFS095F09+           ATTCCTTCCCAACTCAACCCCTCATGATTCTTACTTCTGTCAGCTTCTTCCACTTTCTTT
JMSF051G22+           ATTCCTTCCCAACTCAACCCCTCATGATTCTTACTTCTGTCAGCTTCTTCCACTTTCTTT
                      ____________________________________________________________
consensus             ATTCCTTCCCAACTCAACCCCTCATGATTCTTACTTCTGTCAGCTTCTTCCACTTTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          TCAATGGGCATACCAAAATTAGGCCCTTCAGCATGAGCTTCATGATGGTCCATGTCCGAG
JMFS095F09+           TCAATGGGCATACCAAAATTAGGCCCTTCAGCATGAGCTTCATGATGGTCCATGTCCGAG
JMSF051G22+           TCAATGGGCATACCAAAATTAGGCCCTTCAGCATGAGCTTCATGATGGTCCATGTCCGAG
                      ____________________________________________________________
consensus             TCAATGGGCATACCAAAATTAGGCCCTTCAGCATGAGCTTCATGATGGTCCATGTCCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051G22-          CTCAATTTCTTGTTCTCAATATCTTCAGCAACATCATAAGCAG                 
JMFS095F09+           CTCAATTTCTTGTTCTCAATATCTTCAGCAACATCATAAGCAGCAGAAGTAGGTGGAACA
JMSF051G22+           CTCAATTTCTTGTTCTCAATATCTTCAGCAACATCATAAGCAGCAGAAGTAGGTGGAACA
                      ____________________________________________________________
consensus             CTCAATTTCTTGTTCTCAATATCTTCAGCAACATCATAAGCAGCAGAAGTAGGTGGAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS095F09+           TCGTCCTCAATAATCTCTCCTTCCTCCATATCATAATCGATCCCCAAATTCGAACTGCTC
JMSF051G22+           TCGTCCTCAATAATCTCTCCTTCCTCCATATCATAATCGATCCCCAAATTCGAACTGCTC
                      ____________________________________________________________
consensus             TCGTCCTCAATAATCTCTCCTTCCTCCATATCATAATCGATCCCCAAATTCGAACTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS095F09+           ATAGCCACACCCACTGCTCCGCTTCCAAGGACCTCCTTTCCGCCCTCAGTTTCAACCTCA
JMSF051G22+           ATAGCCACACCCACTGCTCCGCTTCCAAGGACCTCCTTTCCGCCCTCAGTTTCAACCTCA
                      ____________________________________________________________
consensus             ATAGCCACACCCACTGCTCCGCTTCCAAGGACCTCCTTTCCGCCCTCAGTTTCAACCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS095F09+           GCCTCCTTAACCTCCGTTTCGAGTTTCGAATCAATCTCTTCGTGCTTCTTTCCGTGGTGG
JMSF051G22+           GCCTCCTTAACCTCCGTTTCGAGTTTCGAATCAATCTCTTCGTGCTTCTTTCCGTGGTGG
                      ____________________________________________________________
consensus             GCCTCCTTAACCTCCGTTTCGAGTTTCGAATCAATCTCTTCGTGCTTCTTTCCGTGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS095F09+           CGATGGTGGCGACGCCGGTGGTGGTGGTGGTGGTGACCGTGCTTACGACGCTTCGAAGGC
JMSF051G22+           CGATGGTGGCGACGCCGGTGGTGGTGGTGGTGGTGACCGTGCTTACGACGCTTCGAAGGC
                      ____________________________________________________________
consensus             CGATGGTGGCGACGCCGGTGGTGGTGGTGGTGGTGACCGTGCTTACGACGCTTCGAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS095F09+           TCGTCAGTTTCGACATCGGAATGAGAGGAACGGTGGTGCTTGCGACGAG           
JMSF051G22+           TCGTCAGTTTCGACATCGGAATGAGAGGAACGGTGGTGCTTGCGACGAGCAGGGTCACTG
                      ____________________________________________________________
consensus             TCGTCAGTTTCGACATCGGAATGAGAGGAACGGTGGTGCTTGCGACGAGCAGGGTCACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051G22+           GAATCACTGGTCATGTTGGCTGGAATTGAATTGGGTTTGCAAGAATTAGGGTTTGGCTCT
                      ____________________________________________________________
consensus             GAATCACTGGTCATGTTGGCTGGAATTGAATTGGGTTTGCAAGAATTAGGGTTTGGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051G22+           GCAGAGAGTTCGCTAAACGGGTGAGAAATTCCTTTCGGGTTCGAAATTCAGATACATCCC
                      ____________________________________________________________
consensus             GCAGAGAGTTCGCTAAACGGGTGAGAAATTCCTTTCGGGTTCGAAATTCAGATACATCCC