Contig 009580:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003E07Sequence507009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMFF009K08Sequence482009580 (6)ref|XP_009602480.1|7e-63PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMFF025H04Sequence500009580 (6)ref|XP_009602480.1|9e-63PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMFS037A10Sequence524009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMSF012L01Sequence509009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMSF051G05Sequence511009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0

Alignment

This contig is upended


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JMFS037A10+                                            GCAAAAAAGAAGTTCCAAATAAATGAA
                      ____________________________________________________________
consensus                                              GCAAAAAAGAAGTTCCAAATAAATGAA
 
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JMFS037A10+           ATCTTTCAAACGTTTGTACACTGTTACAGGAAAAAAAAAAAAAAAAACTCTGGCAGGGGC
JMSF012L01+                                           AAAAAAAAAAAAAAACTCTGGCAGGGGC
JMFF025H04+                                            AAAAAAAAAAAAAACTCTGGCAGGGGC
JMFF009K08+                                                           TCTGGCAGGGGC
JMFF003E07+                                           AAAAAAAAAAAAAAACTCTGGCAGGGGC
JMSF051G05+                                           AAAAAAAAAAAAAAACTCTGGCAGGGGC
                      ____________________________________________________________
consensus             ATCTTTCAAACGTTTGTACACTGTTACAGGAAAAAAAAAAAAAAAAACTCTGGCAGGGGC
 
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JMFS037A10+           AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMSF012L01+           AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMFF025H04+           AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMFF009K08+           AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMFF003E07+           AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMSF051G05+           AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
                      ____________________________________________________________
consensus             AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
 
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JMFS037A10+           TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMSF012L01+           TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMFF025H04+           TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMFF009K08+           TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMFF003E07+           TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMSF051G05+           TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
                      ____________________________________________________________
consensus             TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
 
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JMFS037A10+           GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMSF012L01+           GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMFF025H04+           GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMFF009K08+           GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMFF003E07+           GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMSF051G05+           GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
                      ____________________________________________________________
consensus             GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
 
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JMFS037A10+           TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMSF012L01+           TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMFF025H04+           TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMFF009K08+           TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMFF003E07+           TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMSF051G05+           TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
                      ____________________________________________________________
consensus             TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
 
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JMFS037A10+           CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMSF012L01+           CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMFF025H04+           CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMFF009K08+           CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMFF003E07+           CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMSF051G05+           CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
                      ____________________________________________________________
consensus             CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
 
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JMFS037A10+           CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMSF012L01+           CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMFF025H04+           CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMFF009K08+           CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMFF003E07+           CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMSF051G05+           CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
                      ____________________________________________________________
consensus             CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
 
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JMFS037A10+           GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMSF012L01+           GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMFF025H04+           GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMFF009K08+           GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMFF003E07+           GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMSF051G05+           GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
                      ____________________________________________________________
consensus             GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
 
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JMFS037A10+           TCCGGCCTCCATTTTTG                                           
JMSF012L01+           TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCGTAGTGTTC   
JMFF025H04+           TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCG           
JMFF009K08+           TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCG           
JMFF003E07+           TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCG           
JMSF051G05+           TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCGTAGTGTTCACC
                      ____________________________________________________________
consensus             TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCGTAGTGTTCACC