Contig 009579:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038J23Sequence627009579 (3)ref|XP_006365983.1|6e-75PREDICTED: potassium transporter 2-like isoform X1 [Solanum tuberosum] ref|XP_00670012732 (5)ref|XP_009773199.1|6e-83PREDICTED: potassium transporter 2 isoform X2 [Nicotiana sylvestris]
JMSF043F05Sequence813009579 (3)ref|XP_009597460.1|1e-131PREDICTED: potassium transporter 2 isoform X1 [Nicotiana tomentosiformis] ref|XP749012732 (5)ref|XP_006365983.1|4e-92PREDICTED: potassium transporter 2-like isoform X1 [Solanum tuberosum] ref|XP_00
JMSF051F19Sequence657009579 (3)ref|XP_008456930.1|5e-62PREDICTED: potassium transporter 2 [Cucumis melo] ref|XP_008456931.1| PREDICTED:721012732 (5)ref|XP_006365983.1|2e-88PREDICTED: potassium transporter 2-like isoform X1 [Solanum tuberosum] ref|XP_00

Alignment

This contig is upended


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JMSF043F05+                                      GATCGGCGCAAAACAAAAGCCGATACGGTGCGT
                      ____________________________________________________________
consensus                                        GATCGGCGCAAAACAAAAGCCGATACGGTGCGT
 
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JMSF043F05+           GCCATAATGCTGTAACGCGAATAGGCAGACTAATATGACGCAAGTTATAGGAACCACCGC
                      ____________________________________________________________
consensus             GCCATAATGCTGTAACGCGAATAGGCAGACTAATATGACGCAAGTTATAGGAACCACCGC
 
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JMSF043F05+           ATATTGGTGGTGATCCTTGGACATGTAGAACTCGAGCCCAGAAACCGCAGAGAAAACGGA
                      ____________________________________________________________
consensus             ATATTGGTGGTGATCCTTGGACATGTAGAACTCGAGCCCAGAAACCGCAGAGAAAACGGA
 
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JMSF043F05+           TATGGCGGGAGTAAGAAGTCCATCTCCAATGACCATACAAGTGCCAAGGAGCACCAAGAT
                      ____________________________________________________________
consensus             TATGGCGGGAGTAAGAAGTCCATCTCCAATGACCATACAAGTGCCAAGGAGCACCAAGAT
 
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JMSF043F05+           TAGCAATGCCGTGTGGAGGAATTTGTACTTCTCGAGCACCAACTTCACCCTCGATCTATT
                      ____________________________________________________________
consensus             TAGCAATGCCGTGTGGAGGAATTTGTACTTCTCGAGCACCAACTTCACCCTCGATCTATT
 
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JMSF043F05+           GTTTCTCTCGGGAGGTTCCTCCCGTTTATACGTGGAAAGGGCTTCATCGGAAACTTGTCG
JMSF038J23+               CTCTCGGGAGGTTCCTCCCGTTTATACGTGGAAAGGGCTTCATCGGAAACTTGTCG
                      ____________________________________________________________
consensus             GTTTCTCTCGGGAGGTTCCTCCCGTTTATACGTGGAAAGGGCTTCATCGGAAACTTGTCG
 
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JMSF043F05+           GTTTGGAAGAAGGCTTACTTTGGCATGCCTGCATATTAAGGAATAAAGCGCGAAAGTACC
JMSF038J23+           GTTTGGAAGAAGGCTTACTTTGGCATGCCTGCATATTAAGGAATAAAGCGCGAAAGTACC
JMSF051F19+              TGGAAGAAGGCTTACTTTGGCATGCCTGCATATTAAGGAATAAAGCGCGAAAGTACC
                      ____________________________________________________________
consensus             GTTTGGAAGAAGGCTTACTTTGGCATGCCTGCATATTAAGGAATAAAGCGCGAAAGTACC
 
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JMSF043F05+           ACCCTCTCCATTGTCATCAGCTCGGAGGACTATAAACACATACTTGAATAAAGGGACAAG
JMSF038J23+           ACCCTCTCCATTGTCATCAGCTCGGAGGACTATAAACACATACTTGAATAAAGGGACAAG
JMSF051F19+           ACCCTCTCCATTGTCATCAGCTCGGAGGACTATAAACACATACTTGAATAAAGGGACAAG
                      ____________________________________________________________
consensus             ACCCTCTCCATTGTCATCAGCTCGGAGGACTATAAACACATACTTGAATAAAGGGACAAG
 
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JMSF043F05+           AGTTAAAGTCCAGAAAACAAACGACATAACCCCGAAAATTTCTTCATTAGTATCCGAATG
JMSF038J23+           AGTTAAAGTCCAGAAAACAAACGACATAACCCCGAAAATTTCTTCATTAGTATCCGAATG
JMSF051F19+           AGTTAAAGTCCAGAAAACAAACGACATAACCCCGAAAATTTCTTCATTAGTATCCGAATG
                      ____________________________________________________________
consensus             AGTTAAAGTCCAGAAAACAAACGACATAACCCCGAAAATTTCTTCATTAGTATCCGAATG
 
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JMSF043F05+           CTGAATGTCTTCCGCAAATGTGCTCTTGAAGACATACAACGGGGAAATGCTGAGATCCCC
JMSF038J23+           CTGAATGTCTTCCGCAAATGTGCTCTTGAAGACATACAACGGGGAAATGCTGAGATCCCC
JMSF051F19+           CTGAATGTCTTCCGCAAATGTGCTCTTGAAGACATACAACGGGGAAATGCTGAGATCCCC
                      ____________________________________________________________
consensus             CTGAATGTCTTCCGCAAATGTGCTCTTGAAGACATACAACGGGGAAATGCTGAGATCCCC
 
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JMSF043F05+           GTAAACGACACCCAGACTTTGATAAGCTAGGATCAGCGTCGCCTTCCAAGAATTCTTCTT
JMSF038J23+           GTAAACGACACCCAGACTTTGATAAGCTAGGATCAGCGTCGCCTTCCAAGAA---TTCTT
JMSF051F19+           GTAAACGACACCCAGACTTTGATAAGCTAGGATCAGCGTCGCCTTCCAAGAATTCTTCTT
                      ____________________________________________________________
consensus             GTAAACGACACCCAGACTTTGATAAGCTAGGATCAGCGTCGCCTTCCAAGAATTCTTCTT
 
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JMSF043F05+           TGTGGTGTCCCAACACTTCCCATATTCAAGATCCATATCTATCCCGAGATTCCTATGTAC
JMSF038J23+           TGTGGTGTCCCAACACTTCCCATATTCAAGATCCATATCTATCCCGAGATTCCTATGTAC
JMSF051F19+           TGTGGTGTCCCAACACTTCCCATATTCAAGATCCATATCTATCCCGAGATTCCTATGTAC
                      ____________________________________________________________
consensus             TGTGGTGTCCCAACACTTCCCATATTCAAGATCCATATCTATCCCGAGATTCCTATGTAC
 
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JMSF043F05+           TGAACCGTAGATTGCTGTCAAAGACACGTCGGGTTTGTCAAAACGAAAGGAATTTCCACA
JMSF038J23+           TGAACCGTAGATTGCTGTCAAAGACACGTCGGGTTTGTCAAAACGAAAGGAATTTCCACA
JMSF051F19+           TGAACCGTAGATTGCTGTCAAAGACACGTCGGGTTTGTCAAAACGAAAGGAATTTCCACA
                      ____________________________________________________________
consensus             TGAACCGTAGATTGCTGTCAAAGACACGTCGGGTTTGTCAAAACGAAAGGAATTTCCACA
 
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JMSF043F05+           GAGGACTCGAGGCAGTGAGTGTTAGACGACCATCTCAAATCGCCC               
JMSF038J23+           GAGGACTCGAGGCAGTGAGTGTTAGACGACCATCTCAAATCGCCCA              
JMSF051F19+           GAGGACTCGAGGCAGTGAGTGTTAGACGACCATCTCAAATCGCCCATAAAGTTTCAAGGA
                      ____________________________________________________________
consensus             GAGGACTCGAGGCAGTGAGTGTTAGACGACCATCTCAAATCGCCCATAAAGTTTCAAGGA
 
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JMSF051F19+           AGCGACCTATTGACCTTCTTGATTTGAGCTGGTATGATATTTTACCAGAAAACAAAGAAT
                      ____________________________________________________________
consensus             AGCGACCTATTGACCTTCTTGATTTGAGCTGGTATGATATTTTACCAGAAAACAAAGAAT
 
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JMSF051F19+           TTACCAGAAATTGAAGCTTTTCTTGAGCTTGAGAGCACACCCCCAGGCCAAAAATGGCTG
                      ____________________________________________________________
consensus             TTACCAGAAATTGAAGCTTTTCTTGAGCTTGAGAGCACACCCCCAGGCCAAAAATGGCTG
 
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JMSF051F19+           TTTGAATTCAAGAAAACCAAAACCCAAAGCTAAGAACAGTAGAAATCATCAATATCAGTC
                      ____________________________________________________________
consensus             TTTGAATTCAAGAAAACCAAAACCCAAAGCTAAGAACAGTAGAAATCATCAATATCAGTC