| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS107F09 | Sequence | 532 | 009574 (5) | ||||||||
| JMSF014C20 | Sequence | 479 | 009574 (5) | ref|XP_011080142.1| | 1e-25 | PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Sesamum indicum] | 805 | 009574 (5) | ref|XP_009622503.1| | 2e-98 | PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Nicotiana tomentosif |
| JMSF050L11 | Sequence | 657 | 009574 (5) | ref|XP_011080142.1| | 2e-50 | PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Sesamum indicum] | 762 | 009574 (5) | ref|XP_009622503.1| | 4e-116 | PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Nicotiana tomentosif |
This contig is upended
. : . : . : . : . : . :
rJMSF014C20- GTGGAATGCCCAAACTAACAATCAAAACACGGGAAGCCC
____________________________________________________________
consensus GTGGAATGCCCAAACTAACAATCAAAACACGGGAAGCCC
. : . : . : . : . : . :
rJMSF014C20- CTTTATATTCCAACCATGCCTGTCGTTTGTAAATATGCATGCTCTCCTGTAGCCTTGCAT
____________________________________________________________
consensus CTTTATATTCCAACCATGCCTGTCGTTTGTAAATATGCATGCTCTCCTGTAGCCTTGCAT
. : . : . : . : . : . :
rJMSF014C20- TCAACGAAAGAGCAAGGAAAAAGGAGTAGAAGGTAAACATGGAAAGAAGGGGAGAACAAA
rJMSF050L11- ACGAAAGAGCAAGGAAAAAGGAGTAGAAGGTAAACATGGAAAGAAGGGGAGAACAAA
____________________________________________________________
consensus TCAACGAAAGAGCAAGGAAAAAGGAGTAGAAGGTAAACATGGAAAGAAGGGGAGAACAAA
. : . : . : . : . : . :
rJMSF014C20- TTCTGCTAACGCTGACTGACGAGTGATCTCATTCATGCTCATAGTAAAGTCTAATTTCAG
rJMSF050L11- TTCTGCTAACGCTGACTGACGAGTGATCTCATTCATGCTCATAGTAAAGTCTAATTTCAG
____________________________________________________________
consensus TTCTGCTAACGCTGACTGACGAGTGATCTCATTCATGCTCATAGTAAAGTCTAATTTCAG
. : . : . : . : . : . :
rJMSF014C20- TTCAAAGAACTCTTCCATCCATGCCATCGAGCAGACCAGACCATAGTCCCTTTACAGGTG
rJMSF050L11- TTCAAAGAACTCTTCCATCCATGCCATCGAGCAGACCAGACCATAGTCCCTTTACAGGTG
____________________________________________________________
consensus TTCAAAGAACTCTTCCATCCATGCCATCGAGCAGACCAGACCATAGTCCCTTTACAGGTG
. : . : . : . : . : . :
rJMSF014C20- GAAGTTGCACAACAAAAGCATTCCAAGGAGGGTATCCGACACCACTGCCACGAACACGAC
rJMSF050L11- GAAGTTGCACAACAAAAGCATTCCAAGGAGGGTATCCGACACCACTGCCACGAACACGAC
____________________________________________________________
consensus GAAGTTGCACAACAAAAGCATTCCAAGGAGGGTATCCGACACCACTGCCACGAACACGAC
. : . : . : . : . : . :
rJMSF014C20- CATCCAAGCGTAGAGAAAGATACACAGGAGACTCAGGGGAGACATTAGCCATATTCTTTT
rJMSF050L11- CATCCAAGCGTAGAGAAAGATACACAGGAGACTCAGGGGAGACATTAGCCATATTCTTTT
____________________________________________________________
consensus CATCCAAGCGTAGAGAAAGATACACAGGAGACTCAGGGGAGACATTAGCCATATTCTTTT
. : . : . : . : . : . :
rJMSF014C20- GTTCATCTATCCATTTGATCCAGTCAGTTACATAAACCGGAGAAAGCTGCCATAGCCTTT
rJMSF050L11- GTTCATCTATCCATTTGATCCAGTCAGTTACATAAACCGGAGAAAGCTGCCATAGCCTTT
____________________________________________________________
consensus GTTCATCTATCCATTTGATCCAGTCAGTTACATAAACCGGAGAAAGCTGCCATAGCCTTT
. : . : . : . : . : . :
rJMSF014C20- TTCTCCGGGCGTTCTTTTCCCTCATCTCTTCATTTTCCTCAAACTCAAAACTAGGTGAAT
rJMSF050L11- TTCTCCGGGCGTTCTTTTCCCTCATCTCTTCATTTTCCTCAAACTCAAAACTAGGTGAAT
____________________________________________________________
consensus TTCTCCGGGCGTTCTTTTCCCTCATCTCTTCATTTTCCTCAAACTCAAAACTAGGTGAAT
. : . : . : . : . : . :
rJMSF014C20- TCCCATCAGTAGCAAATGGAACAACAAGCACTCCTCTTTCTACAAGGGCATCAGTAAATG
rJMSF050L11- TCCCATCAGTAGCAAATGGAACAACAAGCACTCCTCTTTCTACAAGGGCATCAGTAAATG
____________________________________________________________
consensus TCCCATCAGTAGCAAATGGAACAACAAGCACTCCTCTTTCTACAAGGGCATCAGTAAATG
. : . : . : . : . : . :
rJMSF014C20- GTTCACTGAGTTTAAAACACTCAGAAATGAAAGATGAAGGACCAGCAAGAATGACCAGAC
rJMSF050L11- GTTCACTGAGTTTAAAACACTCAGAAATGAAAGATGAAGGACCAGCAAGAATGACCAGAC
____________________________________________________________
consensus GTTCACTGAGTTTAAAACACTCAGAAATGAAAGATGAAGGACCAGCAAGAATGACCAGAC
. : . : . : . : . : . :
rJMSF014C20- GAGCAATTCCTCTAAAATCACTAACAGGAAGAATTCTCTTCTCATCCACACGAAGCTTTA
rJMSF050L11- GAGCAATTCCTCTAAAATCACTAACAGGAAGAATTCTCTTCTCATCCACACGAAGCTTTA
____________________________________________________________
consensus GAGCAATTCCTCTAAAATCACTAACAGGAAGAATTCTCTTCTCATCCACACGAAGCTTTA
. : . : . : . : . : . :
rJMSF014C20- GATTTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
rJMSF050L11- GATTTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
JMSF050L11+ TTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
____________________________________________________________
consensus GATTTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
. : . : . : . : . : . :
rJMSF014C20- CCCTGTAATAAAGAAAGGCAA
rJMSF050L11- CCCTGTAATAAAGAAAGGCAAATATGGAGACTGCTCCNATGTCTATAGCAAGACCTTGTG
JMSF050L11+ CCCTGTAATAAAGAAAGGCAAATATGGAGACTGCTCCAATGTCTATAGCAAGACCTTGTG
____________________________________________________________
consensus CCCTGTAATAAAGAAAGGCAAATATGGAGACTGCTCCAATGTCTATAGCAAGACCTTGTG
. : . : . : . : . : . :
rJMSF050L11- CGATCTCTGGAACTTCAGCAGCTCTTGATGAATTTGCCAGTGCTC
JMSF050L11+ CGATCTCTGGAACTTCAGCAGCTCTTGATGAATTTGCCAGTGCTCCAATCAGCCGTGATG
____________________________________________________________
consensus CGATCTCTGGAACTTCAGCAGCTCTTGATGAATTTGCCAGTGCTCCAATCAGCCGTGATG
. : . : . : . : . : . :
JMSF050L11+ TGGCTATAAATCCTCCAAGAGAACCACTTCCAATAAAAGCAAGATAGAAGAACATACGGA
____________________________________________________________
consensus TGGCTATAAATCCTCCAAGAGAACCACTTCCAATAAAAGCAAGATAGAAGAACATACGGA
. : . : . : . : . : . :
JMFS107F09+ CTAATTTCTGATG
JMSF014C20+ CTAATTTCTGATG
JMSF050L11+ GGGATCGAAAAGGAGAAAGAACTTCGCTTCTTATCTTGGCTGTAGAACTAATTTCTGATG
____________________________________________________________
consensus GGGATCGAAAAGGAGAAAGAACTTCGCTTCTTATCTTGGCTGTAGAACTAATTTCTGATG
. : . : . : . : . : . :
JMFS107F09+ ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
JMSF014C20+ ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
JMSF050L11+ ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
____________________________________________________________
consensus ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
. : . : . : . : . : . :
JMFS107F09+ GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
JMSF014C20+ GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
JMSF050L11+ GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
____________________________________________________________
consensus GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
. : . : . : . : . : . :
JMFS107F09+ GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
JMSF014C20+ GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
JMSF050L11+ GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
____________________________________________________________
consensus GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
. : . : . : . : . : . :
JMFS107F09+ TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
JMSF014C20+ TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
JMSF050L11+ TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
____________________________________________________________
consensus TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
. : . : . : . : . : . :
JMFS107F09+ CCGGTCAGCTTTAACCTTCCGAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
JMSF014C20+ CCGGTCAGCTTTAACCTTCCAAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
JMSF050L11+ CCGGTCAGCTTTAACCTTCCGAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
____________________________________________________________
consensus CCGGTCAGCTTTAACCTTCCGAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
. : . : . : . : . : . :
JMFS107F09+ TGAGCTCGAAAATCCGTTACGGCCATTGGTTCGGTTGATTTGATTG
JMSF014C20+ TGAGCTC
JMSF050L11+ TGAGCTCGAAAATCCGTTACGGCCATTGGTTCGGTTGATTTGATTGATCAGAATACCGCC
____________________________________________________________
consensus TGAGCTCGAAAATCCGTTACGGCCATTGGTTCGGTTGATTTGATTGATCAGAATACCGCC