Contig 009568:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003M04Sequence274009568 (6)emb|CDP11471.1|1e-08unnamed protein product [Coffea canephora]
JMFN001G12Sequence483009568 (6)emb|CDP11471.1|4e-25unnamed protein product [Coffea canephora]
JMSF049H06Sequence662009568 (6)emb|CDP11471.1|2e-25unnamed protein product [Coffea canephora]770009568 (6)emb|CDP11471.1|1e-39unnamed protein product [Coffea canephora]
JMSF051P15Sequence657009568 (6)emb|CDP11471.1|2e-24unnamed protein product [Coffea canephora]758009568 (6)emb|CDP11471.1|9e-40unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF003M04-                                                                CTTTTC
                      ____________________________________________________________
consensus                                                                   CTTTTC
 
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rJMFF003M04-          ATAATTATTATCCTCGAAATACACATTCATTGAATCATTGACTAGAAACTTCATCCAGAA
rJMSF049H06-                    TCCTCGAAATACACATTCATTGAATCATTGACTAGAAACTTCATCCAGAA
rJMSF051P15-                                ACATTCATTGAATCATTGACTAGAAACTTCATCCAGAA
                      ____________________________________________________________
consensus             ATAATTATTATCCTCGAAATACACATTCATTGAATCATTGACTAGAAACTTCATCCAGAA
 
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rJMFF003M04-          GCTTATATCTCCTCACCTTATTTCTAAACACGTGTCTGACGATCCCACTATCTGACTTCG
rJMSF049H06-          GCTTATATCTCCTCACCTTATTTCTAAACACGTGTCTGACGATCCCACTATCTGACTTCG
rJMSF051P15-          GCTTATATCTCCTCACCTTATTTCTAAACACGTGTCTGACGATCCCACTATCTGACTTCG
JMSF049H06+                                                                     CG
                      ____________________________________________________________
consensus             GCTTATATCTCCTCACCTTATTTCTAAACACGTGTCTGACGATCCCACTATCTGACTTCG
 
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rJMFF003M04-          TCCGCCGCAGCCTCTCTTCAATCCCACCGCGCCCCGCGGCGGCGGCGACACCCTTCACGG
rJMSF049H06-          TCCGCCGCAGCCTCTCTTCAATCCCACCGCGCCCCGCGGCGGCGGCGACACCCTTCACGG
rJMSF051P15-          TCCGCCGCAGCCTCTCTTCAATCCCACCGCGCCCCGCGGCGGCGGCGACACCCTTCACGG
JMSF051P15+              GCCGCAGCCTCTCTTCAATCCCACCGCGCCCCGCGGCGGCGGCGACACCCTTCACGG
JMSF049H06+           TCCGCCGCAGCCTCTCTTCAATCCCACCGCGCCCCGCGGCGGCGGCGACACCCTTCACGG
                      ____________________________________________________________
consensus             TCCGCCGCAGCCTCTCTTCAATCCCACCGCGCCCCGCGGCGGCGGCGACACCCTTCACGG
 
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rJMFF003M04-          CGGCGGGCGAGCTCTCCGGCGACACCGATTTCTGTTTGCTGACNACCGNACGGTTCTTCA
rJMSF049H06-          CGGCGGGCGAGCTCTCCGGCGACACCGATTTCTGTTTGCTGACGACCGGACGGTTCTTCA
JMFN001G12+              CGGGCGAGCTCTCCGGCGACACCGATTTCTGTTTGCTGACGACCGGACGGTTCTTCA
rJMSF051P15-          CGGCGGGCGAGCTCTCCGGCGACACCGATTTCTGTTTGCTGACGACCGGACGGTTCTTCA
JMSF051P15+           CGGCGGGCGAGCTCTCCGGCGACACCGATTTCTGTTTGCTGACGACCGGACGGTTCTTCA
JMSF049H06+           CGGCGGGCGAGCTCTCCGGCGACACCGATTTCTGTTTGCTGACGACCGGACGGTTCTTCA
                      ____________________________________________________________
consensus             CGGCGGGCGAGCTCTCCGGCGACACCGATTTCTGTTTGCTGACGACCGGACGGTTCTTCA
 
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rJMFF003M04-          CCTGCAGNNTGGGAGGCGCATTCTTCAG                                
rJMSF049H06-          CCTGCAGTTTGGGAGGCGCATTCTTCAGCCGTAAACACGACCCCCCCATCCTTATATTCC
JMFN001G12+           CCTGCAGTTTGGGAGGCGCATTCTTCAGCCGTAAACACGACCCCCCCATCCTTATATTCC
rJMSF051P15-          CCTGCAGTTTGGGAGGCGCATTCTTCAGCCGTAAACACGACCCCCCCATCCTTATATTCC
JMSF051P15+           CCTGCAGTTTGGGAGGCGCATTCTTCAGCCGTAAACACGACCCCCCCATCCTTATATTCC
JMSF049H06+           CCTGCAGTTTGGGAGGCGCATTCTTCAGCCGTAAACACGACCCCCCCATCCTTATATTCC
                      ____________________________________________________________
consensus             CCTGCAGTTTGGGAGGCGCATTCTTCAGCCGTAAACACGACCCCCCCATCCTTATATTCC
 
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rJMSF049H06-          CCGGCCCGAATTTCTTCCTCGCCTTCCCGTCGTTTTCTTCGCCGGAATTCCGGCACGACG
JMFN001G12+           CCGGCCCGAATTTCTTCCTCGCCTTCCCGTCGTTTTCTTCGCCGGAATTCCGGCACGACG
rJMSF051P15-          CCGGCCCGAATTTCTTCCTCGCCTTCCCGTCGTTTTCTTCGCCGGAATTCCGGCACGACG
JMSF051P15+           CCGGCCCGAATTTCTTCCTCGCCTTCCCGTCGTTTTCTTCGCCGGAATTCCGGCACGACG
JMSF049H06+           CCGGCCCGAATTTCTTCCTCGCCTTCCCGTCGTTTTCTTCGCCGGAATTCCGGCACGACG
                      ____________________________________________________________
consensus             CCGGCCCGAATTTCTTCCTCGCCTTCCCGTCGTTTTCTTCGCCGGAATTCCGGCACGACG
 
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rJMSF049H06-          ACGACGAATTCGACGAATTCTGCGCCTCTTCTCCCTTCTCCACCGTCAGGCACCAGTTGC
JMFN001G12+           ACGACGAATTCGACGAATTCTGCGCCTCTTCTCCCTTCTCCACCGTCAGGCACCAGTTGC
rJMSF051P15-          ACGACGAATTCGACGAATTCTGCGCCTCTTCTCCCTTCTCCACCGTCAGGCACCAGTTGC
JMSF051P15+           ACGACGAATTCGACGAATTCTGCGCCTCTTCTCCCTTCTCCACCGTCAGGCACCAGTTGC
JMSF049H06+           ACGACGAATTCGACGAATTCTGCGCCTCTTCTCCCTTCTCCACCGTCAGGCACCAGTTGC
                      ____________________________________________________________
consensus             ACGACGAATTCGACGAATTCTGCGCCTCTTCTCCCTTCTCCACCGTCAGGCACCAGTTGC
 
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rJMSF049H06-          AGACGCCGTACGACTCCGCTTTCGGATACAAATTGCTGCAGTACCTATGTTGAGATCTGA
JMFN001G12+           AGACGCCGTACGACTCCGCTTTCGGATACAAATTGCTGCAGTACCTATGTTGAGATCTGA
rJMSF051P15-          AGACGCCGTACGACTCCGCTTTCGGATACAAATTGCTGCAGTACCTATGTTGAGATCTGA
JMSF051P15+           AGACGCCGTACGACTCCGCTTTCGGATACAAATTGCTGCAGTACCTATGTTGAGATCTGA
JMSF049H06+           AGACGCCGTACGACTCCGCTTTCGGATACAAATTGCTGCAGTACCTATGTTGAGATCTGA
                      ____________________________________________________________
consensus             AGACGCCGTACGACTCCGCTTTCGGATACAAATTGCTGCAGTACCTATGTTGAGATCTGA
 
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rJMSF049H06-          ATTGACAAAGTTTGCATCTGAAGAGCTCCAAGGATAAGCCATGGTCGCCACACATGCAGC
JMFN001G12+           ATTGACAAAGTTTGCATCTGAAGAGCTCCAAGGATAAGCCATGGTCGCCACACATGCAGC
rJMSF051P15-          ATTGACAAAGTTTGCATCTGAAGAGCTCCAAGGATAAGCCATGGTCGCCACACATGCAGC
JMSF051P15+           ATTGACAAAGTTTGCATCTGAAGAGCTCCAAGGATAAGCCATGGTCGCCACACATGCAGC
JMSF049H06+           ATTGACAAAGTTTGCATCTGAAGAGCTCCAAGGATAAGCCATGGTCGCCACACATGCAGC
                      ____________________________________________________________
consensus             ATTGACAAAGTTTGCATCTGAAGAGCTCCAAGGATAAGCCATGGTCGCCACACATGCAGC
 
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rJMSF049H06-          ACTCGAGATGATTATTAGGAGGCTTAATTGATGGTGGTTTTCCGGCATCTCCTTTGCTGT
JMFN001G12+           ACTCGAGATGATTATTAGGAGGCTTAATTGATGGTGGTTTTCCGGCATCTCCTTTGCTGT
rJMSF051P15-          ACTCGAGATGATTATTAGGAGGCTTAATTGATGGTGGTTTTCCGGCATCTCCTTTGCTGT
JMSF051P15+           ACTCGAGATGATTATTAGGAGGCTTAATTGATGGTGGTTTTCCGGCATCTCCTTTGCTGT
JMSF049H06+           ACTCGAGATGATTATTAGGAGGCTTAATTGATGGTGGTTTTCCGGCATCTCCTTTGCTGT
                      ____________________________________________________________
consensus             ACTCGAGATGATTATTAGGAGGCTTAATTGATGGTGGTTTTCCGGCATCTCCTTTGCTGT
 
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rJMSF049H06-          TTGTCTGCATCATATCATATCATATCATCTGATCTAGCTAGCTATCTGCAAATTCAATAT
JMFN001G12+           TTGTCTGCATCATATCATATCATATCATCTGATCTAGCTAGCTATCTGCAAATTCAATAT
rJMSF051P15-          TTGTCTGCATCATATCATATCATATCATCTGATCTAGCTAGCTATCTGCAAATTCAATAT
JMSF051P15+           TTGTCTGCATCATATCATATCATATCATCTGATCTAGCTAGCTATCTGCAAATTCAATAT
JMSF049H06+           TTGTCTGCATCATATCATATCATATCATCTGATCTAGCTAGCTATCTGCAAATTCAATAT
                      ____________________________________________________________
consensus             TTGTCTGCATCATATCATATCATATCATCTGATCTAGCTAGCTATCTGCAAATTCAATAT
 
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rJMSF049H06-          GTTTGTGGATATAAATGGATTATATTTACGGCAGTGAAGTATGAAGGTGAGTGAGTATGT
JMFN001G12+           GTTTGT                                                      
rJMSF051P15-          GTTTGTGGATATAAATGGATTATATTTACGGCAGTGAAGTATGAAGGTGAGTGAGTATGT
JMSF051P15+           GTTTGTGGATATAAATGGATTATATTTACGGCAGTGAAGTATGAAGGTGAGTGAGTATGT
JMSF049H06+           GTTTGTGGATATAAATGGATTATATTTACGGCAGTGAAGTATGAAGGTGAGTGAGTATGT
                      ____________________________________________________________
consensus             GTTTGTGGATATAAATGGATTATATTTACGGCAGTGAAGTATGAAGGTGAGTGAGTATGT
 
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rJMSF049H06-          ATGGATATTTACGTCAAGCTGATATAATAATATAGATATAGTAGCAGAGGAAAATGCCCC
rJMSF051P15-          ATGGATATTTACGTCAAGCTGATATAATAATATAGATATAGTAGCAGAGGAAAATGCCCC
JMSF051P15+           ATGGATATTTACGTCAAGCTGATATAATAATATAGATATAGTAGCAGAGGAAAATGCCCC
JMSF049H06+           ATGGATATTTACGTCAAGCTGATATAATAATATAGATATAGTAGCAGAGGAAAATGCCCC
                      ____________________________________________________________
consensus             ATGGATATTTACGTCAAGCTGATATAATAATATAGATATAGTAGCAGAGGAAAATGCCCC