Contig 009567:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001B21Sequence369009567 (2)ref|XP_009759805.1|53.1PREDICTED: uncharacterized protein LOC104212284 [Nicotiana sylvestris]799001489 (2)ref|XP_007020607.1|5e-92Mitochondrial transcription termination factor family protein isoform 1 [Theobr
JMSF049D24Sequence635009567 (2)ref|XP_006344885.1|58.2PREDICTED: uncharacterized protein LOC102594087 [Solanum tuberosum]689001489 (2)ref|XP_009591622.1|211PREDICTED: uncharacterized protein LOC104088618 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF049D24+                                   CCTTTGCCGTCTGAGTGCAAGGAACTAGAGCCTGTT
                      ____________________________________________________________
consensus                                     CCTTTGCCGTCTGAGTGCAAGGAACTAGAGCCTGTT
 
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JMSF049D24+           GATCTACTTGTAGCATGATGGAAAGTGTCAATTTTTCTCTTCTCTGTGGTTCTTTCACCA
                      ____________________________________________________________
consensus             GATCTACTTGTAGCATGATGGAAAGTGTCAATTTTTCTCTTCTCTGTGGTTCTTTCACCA
 
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JMSF049D24+           GTCTTAATGCCCATCTTTCCTTGGTTCCCCGACTTAAATGGTTCTGAATTCCATGTAGAC
                      ____________________________________________________________
consensus             GTCTTAATGCCCATCTTTCCTTGGTTCCCCGACTTAAATGGTTCTGAATTCCATGTAGAC
 
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JMSF049D24+           TCTGTATGCCTGTGATTGCCTTGAATGAAACCAGTAGAGTTCTTCTTAGATTTTAACCGC
                      ____________________________________________________________
consensus             TCTGTATGCCTGTGATTGCCTTGAATGAAACCAGTAGAGTTCTTCTTAGATTTTAACCGC
 
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JMSF001B21+                                   ATTGCTGCTAACTCATCATCAGAACCATACTCGTCA
JMSF049D24+           TGCCTATCAGCTTTAGAAATTTTAATTGCTGCTAACTCATCATCAGAACCATACTCGTCA
                      ____________________________________________________________
consensus             TGCCTATCAGCTTTAGAAATTTTAATTGCTGCTAACTCATCATCAGAACCATACTCGTCA
 
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JMSF001B21+           TCATCGTCGACAAAGCTACCGTCATCGTCGGAGTCATAAGGCGAAAGCACACGGCCGTGG
JMSF049D24+           TCATCGTCGACAAAGCTACCGTCATCGTCGGAGTCATAAGGCGAAAGCACACGGCCGTGG
                      ____________________________________________________________
consensus             TCATCGTCGACAAAGCTACCGTCATCGTCGGAGTCATAAGGCGAAAGCACACGGCCGTGG
 
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JMSF001B21+           CGAGACTTACGATTGGGCTTAACAATTTTGGCATTTGAATGCGAAGACACCACGACAATC
JMSF049D24+           CGAGACTTACGATTGGGCTTAACAATTTTGGCATTTGAATGCGAAGACACCACGACAATC
                      ____________________________________________________________
consensus             CGAGACTTACGATTGGGCTTAACAATTTTGGCATTTGAATGCGAAGACACCACGACAATC
 
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JMSF001B21+           CGGTTCAGCCTGGAGAAGCTACTATTTTCTCTACCGGCAGCACGTCTTCCGTCGAAATGA
JMSF049D24+           CGGTTCAGCCTGGAGAAGCTACTATTTTCTCTACCGGCAGCACGTCTTCCGTCGAAATGA
                      ____________________________________________________________
consensus             CGGTTCAGCCTGGAGAAGCTACTATTTTCTCTACCGGCAGCACGTCTTCCGTCGAAATGA
 
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JMSF001B21+           GAAGGGCTAAAGGGGCCGATTCCGACAGAAAGAACCGCCATTGCTGGTCTCCCTTTTGGA
JMSF049D24+           GAAGGGCTAAAGGGGCCGATTCCGACAGAAAGAACCGCCATTGCTGGTCTCCCTTTTGGA
                      ____________________________________________________________
consensus             GAAGGGCTAAAGGGGCCGATTCCGACAGAAAGAACCGCCATTGCTGGTCTCCCTTTTGGA
 
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JMSF001B21+           AGAGAGTACGAAAAGGGGGAAGAGATTCAGAGAATATACTCTAAAACCCTAGAATATGAA
JMSF049D24+           AGAGAGTACG-AAAGGGGGAAGAGATTCAGAGAATATACTCTAAAACCCTAGAATATGAA
                      ____________________________________________________________
consensus             AGAGAGTACGAAAAGGGGGAAGAGATTCAGAGAATATACTCTAAAACCCTAGAATATGAA
 
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JMSF001B21+           AGAAGTTGAGAAATGGAGGTTTTATTGTCC                              
JMSF049D24+           AGAAGTTGAGAAATGGAGGTTTTATTGTCCTCAAATGTAAAATTCTTCTGAGCAGTTTCC
                      ____________________________________________________________
consensus             AGAAGTTGAGAAATGGAGGTTTTATTGTCCTCAAATGTAAAATTCTTCTGAGCAGTTTCC