| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005M11 | Sequence | 486 | 009563 (8) | ref|XP_009791274.1| | 5e-45 | PREDICTED: ubiquitin receptor RAD23c-like isoform X1 [Nicotiana sylvestris] | 620 | 009563 (8) | ref|XP_010647738.1| | 294 | PREDICTED: ubiquitin receptor RAD23c isoform X1 [Vitis vinifera] |
| JMFF025P08 | Sequence | 740 | 009563 (8) | ref|XP_002282352.1| | 300 | PREDICTED: ubiquitin receptor RAD23c isoform X2 [Vitis vinifera] emb|CBI27030.3| | |||||
| JMFF034O05 | Sequence | 526 | 009563 (8) | emb|CDP19777.1| | 6e-66 | unnamed protein product [Coffea canephora] | 509 | 022364 | ref|XP_006482260.1| | 8e-44 | PREDICTED: ubiquitin receptor RAD23c-like isoform X1 [Citrus sinensis] |
| JMSF046M23 | Sequence | 740 | 009563 (8) | emb|CDP19777.1| | 1e-89 | unnamed protein product [Coffea canephora] | 714 | 009563 (8) | ref|XP_002282352.1| | 302 | PREDICTED: ubiquitin receptor RAD23c isoform X2 [Vitis vinifera] emb|CBI27030.3| |
| JMSF049B05 | Sequence | 682 | 009563 (8) | emb|CDP19777.1| | 4e-83 | unnamed protein product [Coffea canephora] | 791 | 009563 (8) | emb|CDP19777.1| | 1e-101 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF005M11- ATTATTTT
____________________________________________________________
consensus ATTATTTT
. : . : . : . : . : . :
rJMSF046M23- GCACAGTGCACACGGACGCAGAAGATGCTAATCGGAAACTAATGCAT
rJMFF005M11- GGGTTTTTACACTGCACAGTGCACACGGACGCAGAAGATGCTAATCGGAAACTAATGCAT
____________________________________________________________
consensus GGGTTTTTACACTGCACAGTGCACACGGACGCAGAAGATGCTAATCGGAAACTAATGCAT
. : . : . : . : . : . :
rJMSF046M23- GTACGGTGGTGAGCATGAGAAAGAGATGCGGATAATAATAGTTATATTAAAAACCGAGAG
rJMFF005M11- GTACGGTGGTGAGCATGAGAAAGAGATGCGGATAATAATAGTTATATTAAAAACCGAGAG
____________________________________________________________
consensus GTACGGTGGTGAGCATGAGAAAGAGATGCGGATAATAATAGTTATATTAAAAACCGAGAG
. : . : . : . : . : . :
rJMSF046M23- GTCACCGAACTTTACTTCCAACATCAGTCCTCGAACTCATGCATGTGATCTAACAGATAG
rJMSF049B05- TTCCAACATCAGTCCTCGAACTCATGCATGTGATCTAACAGATAG
rJMFF005M11- GTCACCGAACTTTACTTCCAACATCAGTCCTCGAACTCATGCATGTGATCTAACAGATAG
rJMFF025P08- TTCCAACATCAGTCCTCGAACTCATGCATGTGATCTAACAGATAG
____________________________________________________________
consensus GTCACCGAACTTTACTTCCAACATCAGTCCTCGAACTCATGCATGTGATCTAACAGATAG
. : . : . : . : . : . :
rJMSF046M23- TTGGCTGCCAATTCCTCGTTCTTGTTGCAAGCAAAGAATACCTCTAGTACAAGCGCTCGA
rJMSF049B05- TTGGCTGCCAATTCCTCGTTCTTGTTGCAAGCAAAGAATACCTCTAGTACAAGCGCTCGA
rJMFF005M11- TTGGCTGCCAATTCCTCGTTCTTGTTGCAAGCAAAGAATACCTCTAGTACAAGCGCTCGA
rJMFF025P08- TTGGCTGCCAATTCCTCGTTCTTGTTGCAAGCAAAGAATACCTCTAGTACAAGCGCTCGA
____________________________________________________________
consensus TTGGCTGCCAATTCCTCGTTCTTGTTGCAAGCAAAGAATACCTCTAGTACAAGCGCTCGA
. : . : . : . : . : . :
rJMSF046M23- TCAAATCCCATTGCTTCAAGACGTTCTATTGCTTCACGCTCCTCGGGTGTTACTTGAATA
rJMSF049B05- TCAAATCCCATTGCTTCAAGACGTTCTATTGCTTCACGCTCCTCGGGTGTTACTTGAATA
rJMFF005M11- TCAAATCCCATTGCTTCAAGACGTTCTATTGCTTCACGCTCCTCGGGTGTTACTTGAATA
rJMFF025P08- TCAAATCCCATTGCTTCAAGACGTTCTATTGCTTCACGCTCCTCGGGTGTTACTTGAATA
____________________________________________________________
consensus TCAAATCCCATTGCTTCAAGACGTTCTATTGCTTCACGCTCCTCGGGTGTTACTTGAATA
. : . : . : . : . : . :
rJMSF046M23- GCCTGAGGCATTGATGCTGCAAGCTGCCCAAGTATGTTGCCTTCTCCTCCTTCAACAGGT
rJMSF049B05- GCCTGAGGCATTGATGCTGCAAGCTGCCCAAGTATGTTGCCTTCTCCTCCTTCAACAGGT
rJMFF005M11- GCCTGAGGCATTGATGCTGCAAGCTGCCCAAGTATGTTGCCTTCTCCTCCTTCAACAGGT
rJMFF025P08- GCCTGAGGCATTGATGCTGCAAGCTGCCCAAGTATGTTGCCTTCTCCTCCTTCAACAGGT
____________________________________________________________
consensus GCCTGAGGCATTGATGCTGCAAGCTGCCCAAGTATGTTGCCTTCTCCTCCTTCAACAGGT
. : . : . : . : . : . :
rJMSF046M23- TCATTGATAAGGCGAAGAAAATCAGCCTGGTGCTCCTGTATAAGCCTCATTAAATGGGGA
rJMSF049B05- TCATTGATAAGGCGAAGAAAATCAGCCTGGTGCTCCTGTATAAGCCTCATTAAATGGGGA
rJMFF005M11- TCATTGATAAGGCGAAGAAAATCAGCCTGGTGCTCCTGTATAAGCCTCATTAAATGGGGA
rJMFF025P08- TCATTGATAAGGCGAAGAAAATCAGCCTGGTGCTCCTGTATAAGCCTCATTAAATGGGGA
____________________________________________________________
consensus TCATTGATAAGGCGAAGAAAATCAGCCTGGTGCTCCTGTATAAGCCTCATTAAATGGGGA
. : . : . : . : . : . :
rJMSF046M23- TTCTGTTTTCCCAGCTCCTGAAGCATGGGCTGCAATATTTGTGGGTTGGCTTGAACCATT
rJMSF049B05- TTCTGTTTTCCCAGCTCCTGAAGCATGGGCTGCAATATTTGTGGGTTGGCTTGAACCATT
rJMFF005M11- TTCTTTTTTCCCAGCTCCTGAAGCATGGGCTGCAATATTTGTGGGTTGGCTTGAACCATT
rJMFF025P08- TTCTGTTTTCCCAGCTCCTGAAGCATGGGCTGCAATATTTGTGGGTTGCCTTGAACCATT
____________________________________________________________
consensus TTCTGTTTTCCCAGCTCCTGAAGCATGGGCTGCAATATTTGTGGGTTGGCTTGAACCATT
. : . : . : . : . : . :
rJMSF046M23- GCTCTCAAGGCTTGGAACTGTTGGCTATTGCGTAAAAATTCTAAGG
rJMSF049B05- GCTCTCAAGGCTTGGAACTGTTGGCTATTGCGTAAAAATTCTAAGG
rJMFF005M11- GCTCTCAAGGCTTGGAACTGTTGGCTATTGCGTAAAAATTCTAAGGAGTTTGCACCTCCT
rJMFF025P08- GCTCTCAAGGCTTGGAACTGTTGGCTATTGCGTAAAAATTCTAAGGAGTTTGCACCTCCT
____________________________________________________________
consensus GCTCTCAAGGCTTGGAACTGTTGGCTATTGCGTAAAAATTCTAAGGAGTTTGCACCTCCT
. : . : . : . : . : . :
rJMFF005M11- GTGTTGGAACCCATGGTTGGAAGACCTTGTGGAAATAAATCTAAAGGGTTTGCATTTGGT
rJMFF025P08- GTGTTGGAACCCATGGTTGGAAGACCTTGTGGAAATAAATCTAAAGGGTTTGCATTTGGT
JMSF046M23+ TTGCATTTGGT
____________________________________________________________
consensus GTGTTGGAACCCATGGTTGGAAGACCTTGTGGAAATAAATCTAAAGGGTTTGCATTTGGT
. : . : . : . : . : . :
rJMFF005M11- CCACTTGAAGGA
rJMFF025P08- CCACTTGAAGGAACGGGTACAGGTTCTGTAGCTTGCAGAGGTTGAGCTGGTTGGTTTGCA
JMSF046M23+ CCACTTGAAGGAACGGGTACAGGTTCTGTAGCTTGCAGAGGTTGAGCTGGTTGGTTTGCA
____________________________________________________________
consensus CCACTTGAAGGAACGGGTACAGGTTCTGTAGCTTGCAGAGGTTGAGCTGGTTGGTTTGCA
. : . : . : . : . : . :
rJMFF025P08- GCTTGCACTATGGG
JMSF046M23+ GCTTGCACTATGGGTGGGTTTCCTCCTGCAGGAGGAGCTTCAGCTGACTCGGGGATACCA
JMSF049B05+ TTCAGCTGACTCGGGGATACCA
____________________________________________________________
consensus GCTTGCACTATGGGTGGGTTTCCTCCTGCAGGAGGAGCTTCAGCTGACTCGGGGATACCA
. : . : . : . : . : . :
JMFF034O05+ ATTGTTATAAGCAGCACGCAAAGCGCGAACT
JMSF046M23+ GAATATAAATATTCAACAGCCCTCTCAGGATTGTTATAAGCAGCACGCAAAGCGCGAACT
JMSF049B05+ GAATATAAATATTCAACAGCCCTCTCAGGATTGTTATAAGCAGCACGCAAAGCGCGAACT
____________________________________________________________
consensus GAATATAAATATTCAACAGCCCTCTCAGGATTGTTATAAGCAGCACGCAAAGCGCGAACT
. : . : . : . : . : . :
JMFF034O05+ ACAGTGTCCCGATCCCAGGTTCCCCCACCCATGTCAAGAATCTGCTGAATTGCTGACTCA
JMSF046M23+ ACAGTGTCCCGATCCCAGGTTCCCCCACCCATGTCAAGAATCTGCTGAATTGCTGACTCA
JMSF049B05+ ACAGTGTCCCGATCCCAGGTTCCCCCACCCATGTCAAGAATCTGCTGAATTGCTGACTCA
____________________________________________________________
consensus ACAGTGTCCCGATCCCAGGTTCCCCCACCCATGTCAAGAATCTGCTGAATTGCTGACTCA
. : . : . : . : . : . :
JMFF034O05+ AGGTTGTTTCCTGCGACCAAGTTAGAAGCTGCTTGACCATAGACATCTTCTTCTGATCCT
JMSF046M23+ AGGTTGTTTCCTGCGACCAAGTTAGAAGCTGCTTGACCATAGACATCTTCTTCTGATCCT
JMFF005M11+ TGATCCT
JMSF049B05+ AGGTTGTTTCCTGCGACCAAGTTAGAAGCTGCTTGACCATAGACATCTTCTTCTGATCCT
____________________________________________________________
consensus AGGTTGTTTCCTGCGACCAAGTTAGAAGCTGCTTGACCATAGACATCTTCTTCTGATCCT
. : . : . : . : . : . :
JMFF034O05+ GCAGTTGCAACGGGTGCAGGGGTGGGGGCAGGGGTTACTGCAGGAGGAGCGGGCGCAGTA
JMSF046M23+ GCAGTTGCAACGGGTGCAGGGGTGGGGGCAGGGGTTACTGCAGGAGGAGCGGGCGCAGTA
JMFF005M11+ GCAGTTGCAACGGGTGCAGGGGTGGGGGCAGGGGTTACTGCAGGAGGAGCGGGCGCAGTA
JMSF049B05+ GCAGTTGCAACGGGTGCAGGGGTGGGGGCAGGGGTTACTGCAGGAGGAGCGGGCGCAGTA
____________________________________________________________
consensus GCAGTTGCAACGGGTGCAGGGGTGGGGGCAGGGGTTACTGCAGGAGGAGCGGGCGCAGTA
. : . : . : . : . : . :
JMFF034O05+ TTTGTAGATGCAGGAGTTGAGCTAACAGGTGGGTTGCTTGCCTGTGATGATTCCTTGGTT
JMSF046M23+ TTTGTAGATGCAGGAGTTGAGCTAACAGGTGGGTTGCTTGCCTGTGATGATTCCTTGGTT
JMFF005M11+ TTTGTAGATGCAGGAGTTGAGCTAACAGGTGGGTTGCTTGCCTGTGATGATTCCTTGGTT
JMSF049B05+ TTTGTAGATGCAGGAGTTGAGCTAACAGGTGGGTTGCTTGCCTGTGATGATTCCTTGGTT
____________________________________________________________
consensus TTTGTAGATGCAGGAGTTGAGCTAACAGGTGGGTTGCTTGCCTGTGATGATTCCTTGGTT
. : . : . : . : . : . :
JMFF034O05+ GTAGGTGTAGCTGATGCTGAACCTTCTCCAGATGTGCTCTTGCTCTTAGATATCATGACC
JMSF046M23+ GTAGGTGTAGCTGATGCTGAACCTTCTCCAGATGTGCTCTTGCTCTTAGATATCATGACC
JMFF005M11+ GTAGGTGTAGCTGATGCTGAACCTTCTCCAGATGTGCTCTTGCTCTTAGATATCATGACC
JMSF049B05+ GTAGGTGTAGCTGATGCTGAACCTTCTCCAGATGTGCTCTTGCTCTTAGATATCATGACC
____________________________________________________________
consensus GTAGGTGTAGCTGATGCTGAACCTTCTCCAGATGTGCTCTTGCTCTTAGATATCATGACC
. : . : . : . : . : . :
JMFF034O05+ ACAACAGAATTATTTTCAGCAACTTTATTCTCCTCCAAGGTTGTTCCATCTTTAAGAACT
JMSF046M23+ ACAACAGAATTATTTTCAGCAACTTTATTCTCCTCCAAGGTTGTTCCATCTTTAAGAACT
JMFF005M11+ ACAACAGAATTATTTTCAGCAACTTTATTCTCCTCCAAGGTTGTTCCATCTTTAAGAACT
JMSF049B05+ ACAACAGAATTATTTTCAGCAACTTTATTCTCCTCCAAGGTTGTTCCATCTTTAAGAACT
____________________________________________________________
consensus ACAACAGAATTATTTTCAGCAACTTTATTCTCCTCCAAGGTTGTTCCATCTTTAAGAACT
. : . : . : . : . : . :
JMFF034O05+ TTTCCCTGGTGGATAAGCATCAGCTTGGAAGCAGGATAAACATCTGATCCTTGAACAGTC
JMSF046M23+ TTTCCCTGGTGGATAAGCATCAGCTTGGAAGCAGGATAAACATCTGATCCTTGAACAGTC
JMFF005M11+ TTTCCCTGGTGGATAAGCATCAGCTTGGAAGCAGGATAAACATCTGATCCTTGAACAGTC
JMSF049B05+ TTTCCCTGGTGGATAAGCATCAGCTTGGAAGCAGGATAAACATCTGATCCTTGAACAGTC
____________________________________________________________
consensus TTTCCCTGGTGGATAAGCATCAGCTTGGAAGCAGGATAAACATCTGATCCTTGAACAGTC
. : . : . : . : . : . :
JMFF034O05+ TCAATGCTCTTCTTGACATCAGCAACCGTATCTTCTGGTTTCACTTCGATTTCGAAGTGA
JMSF046M23+ TCAATGCTCTTCTTGACATCAGCAACCGTATCTTCTGGTTTCACTTCGATTTCGAAGTGA
JMFF005M11+ TCAATGCTCTTCTTGACATCAGCAACCGTATCTTCTGGTTTCACTTCGATTTCGAAGTGA
JMSF049B05+ TCAATGCTCTTCTTGACATCAGCAACCGTATCTTCTGGTTTCACTTCGATTTCGAAGTGA
____________________________________________________________
consensus TCAATGCTCTTCTTGACATCAGCAACCGTATCTTCTGGTTTCACTTCGATTTCGAAGTGA
. : . : . : . : . : . :
JMFF034O05+ GAGCCCTTGAGAGTC
JMSF046M23+ GAGCCCTTGAGAGTCTTCACGAAAATTTTCATTTTTT
JMFF005M11+ GAGCCCTTGAGAGTCTTCACGAAAATTTTCATTTTTT
JMSF049B05+ GAGCCCTTGAGAGTCTTCACGAAAATTTTCATTTTTTTTCTTTAATTTCTCCGCAGAATT
____________________________________________________________
consensus GAGCCCTTGAGAGTCTTCACGAAAATTTTCATTTTTTTTCTTTAATTTCTCCGCAGAATT
. : . : . : . : . : . :
JMSF049B05+ GAATCACTGTCGCTGTCGAAGGAGAAAGAAGAAAGATATAGAAGCCCGAGGGGGCAAGCC
____________________________________________________________
consensus GAATCACTGTCGCTGTCGAAGGAGAAAGAAGAAAGATATAGAAGCCCGAGGGGGCAAGCC