Contig 009561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF048N17Sequence645009561 (2)ref|XP_009614965.1|6e-24PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to762009561 (2)ref|XP_006362572.1|7e-40PREDICTED: disease resistance protein RPP13-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF048N17-                                                CCAAAATGAATCTACAATTTTC
                      ____________________________________________________________
consensus                                                   CCAAAATGAATCTACAATTTTC
 
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rJMSF048N17-          ATAAAGCAGCCCACACACCCAGAATAACAAAAATAACAAAATTTCCCGCGGTGGAAATCA
                      ____________________________________________________________
consensus             ATAAAGCAGCCCACACACCCAGAATAACAAAAATAACAAAATTTCCCGCGGTGGAAATCA
 
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rJMSF048N17-          AAGGATATATAGTAACAACAAATTAACCAACAATACATAGTCCCTCTTGAGAATTGAAGA
                      ____________________________________________________________
consensus             AAGGATATATAGTAACAACAAATTAACCAACAATACATAGTCCCTCTTGAGAATTGAAGA
 
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rJMSF048N17-          TGGAAAAGAAGGACAATGGTATGGCAGCATGCAAGATATTCACGTACGCCACTGAATGGT
                      ____________________________________________________________
consensus             TGGAAAAGAAGGACAATGGTATGGCAGCATGCAAGATATTCACGTACGCCACTGAATGGT
 
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rJMSF048N17-          CAGAAACCACATGAATGCATCGTCTCTGATCTGTAGTGAACTTATTGATCAAGTCATTCT
                      ____________________________________________________________
consensus             CAGAAACCACATGAATGCATCGTCTCTGATCTGTAGTGAACTTATTGATCAAGTCATTCT
 
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rJMSF048N17-          TCAAAAATTTTAGCTGGTGGGGTTACCCGTAGACGACGCATGAGAAGCCACATCGTGGAC
                      ____________________________________________________________
consensus             TCAAAAATTTTAGCTGGTGGGGTTACCCGTAGACGACGCATGAGAAGCCACATCGTGGAC
 
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rJMSF048N17-          GCGAGTGGTTAACAAGACTCTACTGCCTTTGTTATTGTTGGGAAAAGCAATTTGTAAGCA
                      ____________________________________________________________
consensus             GCGAGTGGTTAACAAGACTCTACTGCCTTTGTTATTGTTGGGAAAAGCAATTTGTAAGCA
 
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rJMSF048N17-          GTCCCAATCTCTCTCCGTACACACATCGTCTACTACTATAAAATACTTCCCGTTCTCCAA
                      ____________________________________________________________
consensus             GTCCCAATCTCTCTCCGTACACACATCGTCTACTACTATAAAATACTTCCCGTTCTCCAA
 
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rJMSF048N17-          GTATTCTTTTATTTTATCAGCTAACTTCTCTTCCAACATGCCTTGAAACTCTTTGGTGTT
                      ____________________________________________________________
consensus             GTATTCTTTTATTTTATCAGCTAACTTCTCTTCCAACATGCCTTGAAACTCTTTGGTGTT
 
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rJMSF048N17-          TTTGGTGAAGTTACTCAAAATGTCAAGAAATATCTGCTTTAAGTTCATCATTTTCGAGAC
                      ____________________________________________________________
consensus             TTTGGTGAAGTTACTCAAAATGTCAAGAAATATCTGCTTTAAGTTCATCATTTTCGAGAC
 
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rJMSF048N17-          ACAAACCCAAAGACAAGTGAAAAATTCATATTGAATCTCGTAGTCATCAAAAATCACTTT
                      ____________________________________________________________
consensus             ACAAACCCAAAGACAAGTGAAAAATTCATATTGAATCTCGTAGTCATCAAAAATCACTTT
 
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rJMSF048N17-          ACTTAAAGTGGTTTTGCCGATCCCCGCCATTCTCTCAATTGAGATGACCCTCAAATGAGC
JMSF048N17+                          GCCGATCCCCGCCATTCTCTCAATTGAGATGACCCTCAAATGAGC
                      ____________________________________________________________
consensus             ACTTAAAGTGGTTTTGCCGATCCCCGCCATTCTCTCAATTGAGATGACCCTCAAATGAGC
 
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rJMSF048N17-          TGGTCCCTTGATAAGACGATCCTTTATTAATTTTGCCTCACTATCAATGCCCACTGCATC
JMSF048N17+           TGGTCCCTTGATAAGACGATCCTTTATTAATTTTGCCTCACTATCAATGCCCACTGCATC
                      ____________________________________________________________
consensus             TGGTCCCTTGATAAGACGATCCTTTATTAATTTTGCCTCACTATCAATGCCCACTGCATC
 
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rJMSF048N17-          AACTTCTTCCATCATCACCG                                        
JMSF048N17+           AACTTCTTCCATCATCACCGGAGCCATGACATGAATAGCAGGTTGAGGTTGGCCGTGGTG
                      ____________________________________________________________
consensus             AACTTCTTCCATCATCACCGGAGCCATGACATGAATAGCAGGTTGAGGTTGGCCGTGGTG
 
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JMSF048N17+           ATCTATGAGGGCCTGAAGAGCGGCGGCGTTAGATTCCCAGATTTCCCTAACTTTGTATCT
                      ____________________________________________________________
consensus             ATCTATGAGGGCCTGAAGAGCGGCGGCGTTAGATTCCCAGATTTCCCTAACTTTGTATCT
 
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JMSF048N17+           GATGGCTTTGATCTCCTTAACAGAATCGCTAATCCTGGAAGAGTAATCCGACATTTCCAA
                      ____________________________________________________________
consensus             GATGGCTTTGATCTCCTTAACAGAATCGCTAATCCTGGAAGAGTAATCCGACATTTCCAA
 
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JMSF048N17+           GTATCTGAGCAACCCTTTGTCTTTGTGGTTCTTCTTCTCCACCGCGTACTTGCGGATGGC
                      ____________________________________________________________
consensus             GTATCTGAGCAACCCTTTGTCTTTGTGGTTCTTCTTCTCCACCGCGTACTTGCGGATGGC
 
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JMSF048N17+           GTCCTCCGCCTCCATTACAACGTCGGAGATCTGGTCCACCAGCTCCCTCCGGTTTCTCGA
                      ____________________________________________________________
consensus             GTCCTCCGCCTCCATTACAACGTCGGAGATCTGGTCCACCAGCTCCCTCCGGTTTCTCGA
 
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JMSF048N17+           CGCCGGATCCAGATGCGCGATCAAGTTTTCCATTTCCACCAACAGACCGTCCACCTGGTT
                      ____________________________________________________________
consensus             CGCCGGATCCAGATGCGCGATCAAGTTTTCCATTTCCACCAACAGACCGTCCACCTGGTT
 
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JMSF048N17+           CTTTATCTCTTCCAGTAACGACTTGTTTTCGTCCACTACATGAACTAGCCGGTCCAAAAG
                      ____________________________________________________________
consensus             CTTTATCTCTTCCAGTAACGACTTGTTTTCGTCCACTACATGAACTAGCCGGTCCAAAAG
 
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JMSF048N17+           CCGCCCTGCAACTGGATCTACCAAGCCCGCCATAGCTCAGCTCAGCGAAGATCAGATCTC
                      ____________________________________________________________
consensus             CCGCCCTGCAACTGGATCTACCAAGCCCGCCATAGCTCAGCTCAGCGAAGATCAGATCTC
 
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JMSF048N17+           CGGCGGACCCCGCCTGATGCTGCGTTAGTTAACTCGATCAGTATGTGAAACATTAGCTCC
                      ____________________________________________________________
consensus             CGGCGGACCCCGCCTGATGCTGCGTTAGTTAACTCGATCAGTATGTGAAACATTAGCTCC