Contig 009552:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF048B19Sequence531009552 (2)ref|XP_007025007.1|6e-37Nucleolar RNA-binding Nop10p family protein [Theobroma cacao] gb|EOY27629.1| Nuc470009552 (2)ref|XP_007025007.1|3e-37Nucleolar RNA-binding Nop10p family protein [Theobroma cacao] gb|EOY27629.1| Nuc

Alignment

This contig is upended


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rJMSF048B19+                   GAGTTCTTTAAACCTCTGCATCCACGGCTTTAGGAAGAAGGGGACTAAGCT
JMSF048B19-                    GAGTTCTTTAAACCTCTGCATCCACGGCTTTAGGAAGAAGGGGACTAAGCT
                      ____________________________________________________________
consensus                      GAGTTCTTTAAACCTCTGCATCCACGGCTTTAGGAAGAAGGGGACTAAGCT
 
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rJMSF048B19+          CTTGCTCTGCCAGACAACTAGCAAAGATGTATCTCCATTTCTACATAAACGAAAAGGGCG
JMSF048B19-           CTTGCTCTGCCAGACAACTAGCAAAGATGTATCTCCATTTCTACATAAACGAAAAGGGCG
                      ____________________________________________________________
consensus             CTTGCTCTGCCAGACAACTAGCAAAGATGTATCTCCATTTCTACATAAACGAAAAGGGCG
 
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rJMSF048B19+          ACAAAGTTTATACGACCAAGAAAGAATCTCCAGTAGGATTGGCTACACAATCTGCTCATC
JMSF048B19-           ACAAAGTTTATACGACCAAGAAAGAATCTCCAGTAGGATTGGCTACACAATCTGCTCATC
                      ____________________________________________________________
consensus             ACAAAGTTTATACGACCAAGAAAGAATCTCCAGTAGGATTGGCTACACAATCTGCTCATC
 
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rJMSF048B19+          CAGCTCGGTTCTCCCCTGATGACAAATACTCAAGGCAGAGAGTTCTCCTAAAGAAGCGTT
JMSF048B19-           CAGCTCGGTTCTCCCCTGATGACAAATACTCAAGGCAGAGAGTTCTCCTAAAGAAGCGTT
                      ____________________________________________________________
consensus             CAGCTCGGTTCTCCCCTGATGACAAATACTCAAGGCAGAGAGTTCTCCTAAAGAAGCGTT
 
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rJMSF048B19+          TTGGTTTGCTTCCCACCCAGAAGCCACCTCCCAAGTATTGATTGTTCCAACTCTATCGAG
JMSF048B19-           TTGGTTTGCTTCCCACCCAGAAGCCACCTCCCAAGTATTGATTGTTCCAACTCTATCGAG
                      ____________________________________________________________
consensus             TTGGTTTGCTTCCCACCCAGAAGCCACCTCCCAAGTATTGATTGTTCCAACTCTATCGAG
 
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rJMSF048B19+          GCTTTACCTAGTCGTAATGCTCTTTGGTTTGACTTTGCAATAGAGAGTGTGGATCATCAA
JMSF048B19-           GCTTTACCTAGTCGTAATGCTCTTTGGTTTGACTTTGCAATAGAGAGTGTGGATCATCAA
                      ____________________________________________________________
consensus             GCTTTACCTAGTCGTAATGCTCTTTGGTTTGACTTTGCAATAGAGAGTGTGGATCATCAA
 
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rJMSF048B19+          AACGTTGTTGTTAGTTATGCTTTTCATTACTCATAGAATGTATGACGGTTGAAAATTGAC
JMSF048B19-           AACGTTGTTGTTAGTTATGCTTTTCATTACTCATAGAATGTATGACGGTTGAAAATTGAC
                      ____________________________________________________________
consensus             AACGTTGTTGTTAGTTATGCTTTTCATTACTCATAGAATGTATGACGGTTGAAAATTGAC
 
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rJMSF048B19+          TCCAACTATTTTTTGCCTTGTAAAAGCACATCTGAGGCTCCTCGTAATTGCTTTCTTGG 
JMSF048B19-           TCCAACTATTTTTTGCCTTGTAAAAGCACATCTGAGGCTCCTCGTAATTGCTTTCTTGGT
                      ____________________________________________________________
consensus             TCCAACTATTTTTTGCCTTGTAAAAGCACATCTGAGGCTCCTCGTAATTGCTTTCTTGGT
 
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JMSF048B19-           GGATTTATGTGTTGTAATACTGGATTCATATGAAAATATCTTTAAATGTTAAAAAAAAAA
                      ____________________________________________________________
consensus             GGATTTATGTGTTGTAATACTGGATTCATATGAAAATATCTTTAAATGTTAAAAAAAAAA