Contig 009548:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020P18Sequence684009548 (3)ref|XP_004229507.1|8e-64PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Solanum lycopersicu743005824 (5)ref|XP_006354611.1|2e-105PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero
JMSF028B05Sequence675009548 (3)ref|XP_004229507.1|7e-64PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Solanum lycopersicu746005824 (5)ref|XP_006354611.1|4e-106PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero
JMSF047L12Sequence688009548 (3)ref|XP_004229507.1|2e-61PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Solanum lycopersicu739005824 (5)ref|XP_006354611.1|9e-83PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero

Alignment

This contig is upended


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JMSF047L12+                                           ATAAACAAGTAGCTGAGAGTGTACGGTC
                      ____________________________________________________________
consensus                                             ATAAACAAGTAGCTGAGAGTGTACGGTC
 
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JMSF020P18+            CCTTGCAAGCCAACAGAGCAGTGCCAGCTATAGCAGCAGTGGATGCCCAGGCAACAGCA
JMSF028B05+            CCTTGCAAGCCAACAGAGCAGTGCCAGCTATAGCAGCAGTGGATGCCCAGGCAACAGCA
JMSF047L12+           ACCTTGCAAGCCAACAGAGCAGTGCCAGCTATAGCAGCAGTGGATGCCCAGGCAACAGCA
                      ____________________________________________________________
consensus             ACCTTGCAAGCCAACAGAGCAGTGCCAGCTATAGCAGCAGTGGATGCCCAGGCAACAGCA
 
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JMSF020P18+           TGAGGTGCACTAATGCGACCTGAAGGAAGTGGCCTATGCATGGTTCTCTTCATTCTTGCA
JMSF028B05+           TGAGGTGCACTAATGCGACCTGAAGGAAGTGGCCTATGCATGGTTCTCTTCATTCTTGCA
JMSF047L12+           TGAGGTGCACTAATGCGACCTGAAGGAAGTGGCCTATGCATGGTTCTCTTCATTCTTGCA
                      ____________________________________________________________
consensus             TGAGGTGCACTAATGCGACCTGAAGGAAGTGGCCTATGCATGGTTCTCTTCATTCTTGCA
 
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JMSF020P18+           TCATTTTTAATCTCAAACACCTGATTTAGGGAGTTTGCAGACGCTGCAACCATCATAGTG
JMSF028B05+           TCATTTTTAATCTCAAACACCTGATTTAGGGAGTTTGCAGACGCTGCAACCATCATAGTG
JMSF047L12+           TCATTTTTAATCTCAAACACCTGATTTAGGGAGTTTGCAGACGCTGCAACCATCATAGTG
                      ____________________________________________________________
consensus             TCATTTTTAATCTCAAACACCTGATTTAGGGAGTTTGCAGACGCTGCAACCATCATAGTG
 
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JMSF020P18+           CCTGCACACGTGGCCCAAAGGCCGACATAATCAATCGCACTGCCACTCCCAAGAACATAT
JMSF028B05+           CCTGCACACGTGGCCCAAAGGCCGACATAATCAATCGCACTGCCACTCCCAAGAACATAT
JMSF047L12+           CCTGCACACGTGGCCCAAAGGCCGACATAATCAATCGCACTGCCACTCCCAAGAACATAT
                      ____________________________________________________________
consensus             CCTGCACACGTGGCCCAAAGGCCGACATAATCAATCGCACTGCCACTCCCAAGAACATAT
 
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JMSF020P18+           CCAGTGCCAGACGTTGCAACCACTAACATGCTAAGCCGAGCTTTAGAGAGCTCCCAGTAA
JMSF028B05+           CCAGTGCCAGACGTTGCAACCACTAACATGCTAAGCCGAGCTTTAGAGAGCTCCCAGTAA
JMSF047L12+           CCAGTGCCAGACGTTGCAACCACTAACATGCTAAGCCGAGCTTTAGAGAGCTCCCAGTAA
                      ____________________________________________________________
consensus             CCAGTGCCAGACGTTGCAACCACTAACATGCTAAGCCGAGCTTTAGAGAGCTCCCAGTAA
 
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JMSF020P18+           CAGCGCCCGTAGTGCTTAGCCAAGTCGACCACCTCCCTACTCTTCAAAACCGATGCAGCC
JMSF028B05+           CAGCGCCCGTAGTGCTTAGCCAAGTCGACCACCTCCCTACTCTTCAAAACCGATGCAGCC
JMSF047L12+           CAGCGCCCGTAGTGCTTAGCCAAGTCGACCACCTCCCTACTCTTCAAAACCGATGCAGCC
                      ____________________________________________________________
consensus             CAGCGCCCGTAGTGCTTAGCCAAGTCGACCACCTCCCTACTCTTCAAAACCGATGCAGCC
 
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JMSF020P18+           GCGAACGACGACAAGTCGACGGCCGATGAAGAAGGCCCGTCCCGAGCCCACGAGGAAGAC
JMSF028B05+           GCGAACGACGACAAGTCGACGGCCGATGAAGAAGGCCCGTCCCGAGCCCACGAGGAAGAC
JMSF047L12+           GCGAACGACGACAAGTCGACGGCCGATGAAGAAGGCCCGTCCCGAGCCCACGAGGAAGAC
                      ____________________________________________________________
consensus             GCGAACGACGACAAGTCGACGGCCGATGAAGAAGGCCCGTCCCGAGCCCACGAGGAAGAC
 
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JMSF020P18+           GAAAGCCCTAGTTTCACCGAATCGGCAGGCGAGGTTGACTCTGACCCGGCGGCCGACGAC
JMSF028B05+           GAAAGCCCTAGTTTCACCGAATCGGCAGGCGAGGTTGACTCTGACCCGGCGGCCGACGAC
JMSF047L12+           GAAAGCCCTAGTTTCACCGAATCGGCAGGCGAGGTTGACTCTGACCCGGCGGCCGACGAC
                      ____________________________________________________________
consensus             GAAAGCCCTAGTTTCACCGAATCGGCAGGCGAGGTTGACTCTGACCCGGCGGCCGACGAC
 
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JMSF020P18+           GTGGATCGGCTCAGAAGTCCATGGTGAGATAGGGGAGCACGAAGGAGAAGGATAGATGGG
JMSF028B05+           GTGGATCGGCTCAGAAGTCCATGGTGAGATAGGGGAGCACGAAGGAGAAGGATAGATGGG
JMSF047L12+           GTGGATCGGCTCAGAAGTCCATGGTGAGATAGGGGAGCACGAAGGAGAAGGATAGATGGG
                      ____________________________________________________________
consensus             GTGGATCGGCTCAGAAGTCCATGGTGAGATAGGGGAGCACGAAGGAGAAGGATAGATGGG
 
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JMSF020P18+           TTGGAGTTGGATGTATGGACGAGTTTCGATGATAAACTCAGCGAGCTTCTCCACATGGCT
JMSF028B05+           TTGGAGTTGGATGTATGGACGAGTTTCGATGATAAACTCAGCGAGCTTCTCCACATGGCT
JMSF047L12+           TTGGAGTTGGATGTATGGACGAGTTTCGATGATAAACTCAGCGAGCTTCTCCACATGGCT
                      ____________________________________________________________
consensus             TTGGAGTTGGATGTATGGACGAGTTTCGATGATAAACTCAGCGAGCTTCTCCACATGGCT
 
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JMSF020P18+           GAGTCGGAGGAGCGAGTTGAGTGAGTTCGCGGTTGTTGTTTTGATCTCGAGAAGAGAACC
JMSF028B05+           GAGTCGGAGGAGCGAGTTGGGTGAGTTCGCGGTTGTTGTTTTGATCTC            
JMSF047L12+           GAGTCGGAGGAGCGAGTTGGGTGAGTTCGCGGTTGTTGTTTTGATCTCGAGAAGAGAACC
                      ____________________________________________________________
consensus             GAGTCGGAGGAGCGAGTTGGGTGAGTTCGCGGTTGTTGTTTTGATCTCGAGAAGAGAACC