| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF042L02 | Sequence | 744 | 009547 (9) | ref|XP_009607716.1| | 2e-30 | PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplas | 791 | 009547 (9) | gb|AFS28673.1| | 3e-92 | putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, partial [Olea e |
| JMSF047E02 | Sequence | 659 | 009547 (9) | 742 | 009547 (9) | gb|AFS28673.1| | 8e-105 | putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, partial [Olea e | |||
| JMSF047J07 | Sequence | 703 | 009547 (9) | ref|XP_002268908.1| | 3e-11 | PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplas | 755 | 015169 | ref|XP_007154106.1| | 7e-10 | hypothetical protein PHAVU_003G0909001g, partial [Phaseolus vulgaris] gb|ESW2610 |
| JMSF051F22 | Sequence | 613 | 009547 (9) | ref|XP_002268908.1| | 3e-04 | PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplas | 726 | 009547 (9) | gb|AFS28673.1| | 1e-100 | putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, partial [Olea e |
| JMSF052H10 | Sequence | 606 | 009547 (9) | 912 | 009547 (9) | ref|XP_009607716.1| | 6e-135 | PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplas | |||
This contig is upended
. : . : . : . : . : . :
rJMSF052H10- GTTAAGGGTTCATTACATTCTCCTAGTACCCA
____________________________________________________________
consensus GTTAAGGGTTCATTACATTCTCCTAGTACCCA
. : . : . : . : . : . :
rJMSF047E02- ATCTCACACCTTGTGATAATGTGAACACTCTGCAATC-TTGAAGAATACTACAATGC
rJMSF042L02- ATCTCACACCTTGTGATAATGTGAACACTCTGCAATCGTTGAAGAATACTACAATGC
rJMSF051F22- ATCTCACACCTTGTGATAATGTGAACACTCTGCAATC-TTGAAGAATACTACAATGC
rJMSF052H10- TGNATCTCACACCTTGTGATAATGTGAACACTCTGCAATC-TTGAAGAATACTACAATGC
____________________________________________________________
consensus TGNATCTCACACCTTGTGATAATGTGAACACTCTGCAATC-TTGAAGAATACTACAATGC
. : . : . : . : . : . :
rJMSF047E02- AACCAACCAACCTGTTCCAGGTTGAACTAAATGTCATTACAAAATTCTCACTCACTGTAC
rJMSF042L02- AACCAACCAACCTGTTCCAGGTTGAACTAAATGTCATTACAAAATTCTCACTCACTGTAC
rJMSF051F22- AACCAACCAACCTGTTCCAGGTTGAACTAAATGTCATTACAAAATTCTCACTCACTGTAC
rJMSF052H10- AACCAACCAACCTGTTCCAGGTTGAACTAAATGTCATTACAAAATTCTCACTCACTGTAC
____________________________________________________________
consensus AACCAACCAACCTGTTCCAGGTTGAACTAAATGTCATTACAAAATTCTCACTCACTGTAC
. : . : . : . : . : . :
rJMSF047E02- ATGGATGGATGGATACAAAATATGGGATCAATTCAATTTCAATTTCAATTTAATTATGCA
rJMSF042L02- ATGGATGGATGGATACAAAATATGGGATCAATTCAATTTCAATTTCAATTTAATTATGCA
rJMSF051F22- ATGGATGGATGGATACAAAATATGGGATCAATTCAATTTCAATTTCAATTTAATTATGCA
rJMSF052H10- ATGGATGGATGGATACAAAATATGGGATCAATTCAATTTCAATTTCAATTTAATTATGCA
____________________________________________________________
consensus ATGGATGGATGGATACAAAATATGGGATCAATTCAATTTCAATTTCAATTTAATTATGCA
. : . : . : . : . : . :
rJMSF047E02- TAATTGAAGCGCGCGTTCAATATTCTCTCAGCTAGCAGCATATCATCAGGTGTTGTAACC
rJMSF042L02- TAATTGAAGCGCGCGTTCAATATTCTCTCAGCTAGCAGCATATCATCAGGTGTTGTAACC
rJMSF051F22- TAATTGAAGCGCGCGTTCAATATTCTCTCAGCTAGCAGCATATCATCAGGTGTTGTAACC
rJMSF052H10- TAATTGAAGCGCGCGTTCAATATTCTCTCAGCTAGCAGCATATCATCAGGTGTTGTAACC
____________________________________________________________
consensus TAATTGAAGCGCGCGTTCAATATTCTCTCAGCTAGCAGCATATCATCAGGTGTTGTAACC
. : . : . : . : . : . :
rJMSF047E02- TTGATGTTAGAGTAGGAGCCTTCGGTAATGTAGACTGGATGTTTAAGGAGCTCCACAATA
rJMSF042L02- TTGATGTTAGAGTAGGAGCCTTCGGTAATGTAGACTGGATGTTTAAGGAGCTCCACAATA
rJMSF051F22- TTGATGTTAGAGTAGGAGCCTTCGGTAATGTAGACTGGATGTTTAAGGAGCTCCACAATA
rJMSF052H10- TTGATGTTAGAGTAGGAGCCTTCGGTAATGTAGACTGGATGTTTAAGGAGCTCCACAATA
____________________________________________________________
consensus TTGATGTTAGAGTAGGAGCCTTCGGTAATGTAGACTGGATGTTTAAGGAGCTCCACAATA
. : . : . : . : . : . :
rJMSF047E02- GATACATCATCTGTGACTTCAAGACCTTCCCTATTGATTATCTCAAACCCCTTCTTAAGC
rJMSF042L02- GATACATCATCTGTGACTTCAAGACCTTCCCTATTGATTATCTCAAACCCCTTCTTAAGC
rJMSF051F22- GATACATCATCTGTGACTTCAAGACCTTCCCTATTGATTATCTCAAACCCCTTCTTAAGC
rJMSF052H10- GATACATCATCTGTGACTTCAAGACCTTCCCTATTGATTATCTCAAACCCCTTCTTAAGC
____________________________________________________________
consensus GATACATCATCTGTGACTTCAAGACCTTCCCTATTGATTATCTCAAACCCCTTCTTAAGC
. : . : . : . : . : . :
rJMSF047E02- AACTCGGGCTTGATTACCTGTGGAGTTTGCATTTCCCAGAGGGTTTTCCGGTTAAGAGTT
rJMSF042L02- AACTCGGGCTTGATTACCTGTGGAGTTTGCATTTCCCAGAGGGTTTTCCGGTTAAGAGTT
rJMSF051F22- AACTCGGGCTTGATTACCTGTGGAGTTTGCATTTCCCAGAGGGTTTTCCGGTTAAGAGTT
rJMSF052H10- AACTCGGGCTTGATTACCTGTGGAGTTTGCATTTCCCAGAGGGTTTTCCGGTTAAGAGTT
____________________________________________________________
consensus AACTCGGGCTTGATTACCTGTGGAGTTTGCATTTCCCAGAGGGTTTTCCGGTTAAGAGTT
. : . : . : . : . : . :
rJMSF047E02- CTCACAACAAATGATTCATTATTTGCCTCTTTAATTGTTGATTTCGCAGGAACCCCAAGA
rJMSF042L02- CTCACAACAAATGATTCATTATTTGCCTCTTTAATTGTTGATTTCGCAGGAACCCCAAGA
rJMSF051F22- CTCACAACAAATGATTCATTATTTGCCTCTTTAATTGTTGATTTCGCAGGAACCCCAAGA
rJMSF052H10- CTCACAACAAATGATTCATTATTTGCCTCTTTAATTGTTGATTTCGCAGGAACCCCAAGA
____________________________________________________________
consensus CTCACAACAAATGATTCATTATTTGCCTCTTTAATTGTTGATTTCGCAGGAACCCCAAGA
. : . : . : . : . : . :
rJMSF047E02- ACTGCTGCTCCAACAAGCCAACCATCCTTTAAGACCTTTTCTACATCTCCTGCCAATACT
rJMSF042L02- ACTGCTGCTCCAACAAGCCAACCATCCTTTAAGACCTTTTCTACATCTCCTGCCAATACT
rJMSF051F22- ACTGCTGCTCCAACAAGCCAACCATCCTTTAAGACCTTTTCTACATCTCCTGCCAATACT
rJMSF052H10- ACTGCTGCTCCAACAAGCCAACCATCCTTTAAGACCTTTTCTACATCTCCTGCCAATACT
____________________________________________________________
consensus ACTGCTGCTCCAACAAGCCAACCATCCTTTAAGACCTTTTCTACATCTCCTGCCAATACT
. : . : . : . : . : . :
rJMSF047E02- AGAGGTCTCGCAGCGTCATGTATGCAAATGAGTTCAGAACTCAAATCAACTTCCTGAAAA
rJMSF042L02- AGAGGTCTCGCAGCGTCATGTATGCAAATGAGTTCAGAACTCAAATCAACTTCCTGAAAA
rJMSF051F22- AGAGGTCTCGCAGCGTCATGTATGCAAATGAGTTCAGAACTCAAATCAACTTCCTGAAAA
rJMSF052H10- AGAGGTCTCGCAGCGTCATGTATGCAAATGAGTTCAGAACTCAAATCAACTTCCTGAAAA
____________________________________________________________
consensus AGAGGTCTCGCAGCGTCATGTATGCAAATGAGTTCAGAACTCAAATCAACTTCCTGAAAA
. : . : . : . : . : . :
rJMSF047E02- CCATTGTATACAGAATCTTGCCTCTCCTTTCCAGGCAATGCAAATTTCAATTCGATGTGG
rJMSF042L02- CCATTGTATACAGAATCTTGCCTCTCCTTTCCAGGCAATGCAAATTTCAATTCGATGTGG
rJMSF051F22- CCATTGTATACAGAATCTTGCCTCTCCTTTCCAGGCAATGCAAATTTCAATTCGATGTGG
rJMSF052H10- CCATTGTATACAGAATCTTGCCTCTCCTTTCCAGGCAATGCAAATTTCAATTCGATGTGG
____________________________________________________________
consensus CCATTGTATACAGAATCTTGCCTCTCCTTTCCAGGCAATGCAAATTTCAATTCGATGTGG
. : . : . : . : . : . :
rJMSF047E02- AATTTTTTTCCTGCATCTTCAAAAACGTCATTATAAAACGGATCGCATACTACCACAATT
rJMSF042L02- AATTTTTTTCCTTC-------AAAACGTCATTATAAAACGGATCGCATACTACCACAATT
rJMSF051F22- AATTTTTTTCCT
rJMSF052H10- AATTTTTTTCCTGCATCTTCAAAAACGTCATTATAAAACGGATCGCATACTACCACAATT
JMSF042L02+ CGTCATTATAAAACGGATCGCATACTACCACAATT
____________________________________________________________
consensus AATTTTTTTCCTGCATCTTCAAAAACGTCATTATAAAACGGATCGCATACTACCACAATT
. : . : . : . : . : . :
rJMSF047E02- TCTTTCACT
rJMSF042L02- TCTTTCACTTGAGGCAACTTANAGAAGGTGTCGAAACTGTACAATGCAATTGGCTGGCCT
rJMSF052H10- TCTTTCACTTGAGGCAACTTAGAGAAGGTGTCGAAACTGTACAATGCAATTGGCTGGCCT
JMSF042L02+ TCTTTCACTTGAGGCAACTTAGAGAAGGTGTCGAAACTGTACAATGCAATTGGCTGGCCT
JMSF047J07+ T
____________________________________________________________
consensus TCTTTCACTTGAGGCAACTTAGAGAAGGTGTCGAAACTGTACAATGCAATTGGCTGGCCT
. : . : . : . : . : . :
rJMSF042L02- A
rJMSF052H10- AGAAGTGGAAGATACTGCTTCGGCATGCTCACACCCATTCTTTTCCCCATCCCTCCTGCA
JMSF051F22+ ATTCTTTTCCCCATCCCTCCTGCA
JMSF052H10+ TCCCCATCCCTCCTGCA
JMSF042L02+ AGAAGTGGAAGATACTGCTTCGGCATGCTCACACCCATTCTTTTCCCCATCCCTCCTGCA
JMSF047J07+ AGAAGTGGAAGATACTGNTTCGGCATGCTCACACCCATTCTTTTCCCCATCCCTCCTGCA
____________________________________________________________
consensus AGAAGTGGAAGATACTGCTTCGGCATGCTCACACCCATTCTTTTCCCCATCCCTCCTGCA
. : . : . : . : . : . :
rJMSF052H10- NGAAGAATCACTGAAACACTTTTCTCCTTCACTGCAAGATC
JMSF051F22+ AGAAGAATCACTGAAACACTTTTCTCCTTCACTGCAAGATCTGCGCACCGCTTGTGAAGA
JMSF052H10+ AGAAGAATCACTGAAACACTTTTCTCCTTCACTGCAAGATCTGCGCACCGCTTGTGAAGA
JMSF042L02+ AGAAGAATCACTGAAACACTTTTCTCCTTCACTGCAAGATCTGCGCACCGCTTGTGAAGA
JMSF047J07+ AGAAGAATCACTGAAACACTTTTCTCNTTCACTGCAAGATCTGCGCACCGCTTGTGAAGA
JMSF047E02+ GAAGAATCACTGAAACACTTTTCTCCTTCACTGCAAGATCTGCGCACCGCTTGTGAAGA
____________________________________________________________
consensus AGAAGAATCACTGAAACACTTTTCTCCTTCACTGCAAGATCTGCGCACCGCTTGTGAAGA
. : . : . : . : . : . :
JMSF051F22+ TCTCCATTGACTCCATATAGAGCAGAACAAGTAATTTTCGAAAGGGAACGCCTTGAGCTT
JMSF052H10+ TCTCCATTGACTCCATATAGAGCAGAACAAGTAATTTTCGAAAGGGAACGCCTTGAGCTT
JMSF042L02+ TCTCCATTGACTCCATATAGAGCAGAACAAGTAATTTTCGAAAGGGAACGCCTTGAGCTT
JMSF047J07+ TCTCCATTGACTCCATATAGAGCAGAACAAGTAATTTTCGAAAGGGAACGCCTTGAGCTT
JMSF047E02+ TCTCCATTGACTCCATATAGGGCAGAACAAGTAATTTTCGAAAGGGAACGCCTTGAGCTT
____________________________________________________________
consensus TCTCCATTGACTCCATATAGAGCAGAACAAGTAATTTTCGAAAGGGAACGCCTTGAGCTT
. : . : . : . : . : . :
JMSF051F22+ CTCAAAGGAACGATTTTTCCAGTACGGGGATGCAGAAATGAAGGAACCTTGGGACAGTAT
JMSF052H10+ CTCAAAGGAACGATTTTTCCAGTACGGGGATGCAGAAATGAAGGAACCTTGGGACAGTAT
JMSF042L02+ CTCAAAGGAACGATTTTTCCAGTACGGGGATGCAGAAATGAAGGAACCTTGGGACAGTAT
JMSF047J07+ CTCAAAGGAACGATTTTTCCAGTACGGGGATGCAGAAATGAAGGAACCTTGGGACAGTAT
JMSF047E02+ CTCAAAGGAACGATTTTTCCAGTACGGGGATGCAGAAATGAAGGAACCTTGGGACAGTAT
____________________________________________________________
consensus CTCAAAGGAACGATTTTTCCAGTACGGGGATGCAGAAATGAAGGAACCTTGGGACAGTAT
. : . : . : . : . : . :
JMSF051F22+ GAGATGGAATAATGTAGGAGAAAGGATTTTTGGGGATGGGTTTTCAAGAACAGCGGCGAA
JMSF052H10+ GAGATGGAATAATGTAGGAGAAAGGATTTTTGGGGATGGGTTTTCAAGAACAGCGGCGAA
JMSF042L02+ GAGATGGAATAATGTAGGAGAAAGGATTTTTGGGGATGGGTTTTCAAGAACAGCGGCGAA
JMSF047J07+ GAGATGGAATAATGTAGGAGAAAGGATTTTTGGGGATGGGTTTTCAAGAACAGCGGCGAA
JMSF047E02+ GAGATGGAATAATGTAGGAGAAAGGATTTTTGGGGATGGGTTTTCAAGAACAGCGGCGAA
____________________________________________________________
consensus GAGATGGAATAATGTAGGAGAAAGGATTTTTGGGGATGGGTTTTCAAGAACAGCGGCGAA
. : . : . : . : . : . :
JMSF051F22+ TTGGGAAGACCGAGCTGAAGATGGGACATGGTTGTATGTTCCCACACAACCCACAAAACC
JMSF052H10+ TTGGGAAGACCGAGCTGAAGATGGGACATGGTTGTATGTTCCCACACAACCCACAAAACC
JMSF042L02+ TTGGGAAGACCGAGCTGAAGATGGGACATGGTTGTATGTTCCCACACAACCCACAAAACC
JMSF047J07+ TTGGGAAGACCGAGCTGAAGATGGGACATGGTTGTATGTTCCCACACAACCCACAAAACC
JMSF047E02+ TTGGGAAGACCGAGCTGAAGATGGGACATGGTTGTATGTTCCCACACAACCCACAAAACC
____________________________________________________________
consensus TTGGGAAGACCGAGCTGAAGATGGGACATGGTTGTATGTTCCCACACAACCCACAAAACC
. : . : . : . : . : . :
JMSF051F22+ TTTGCCCAGCTAGTGACCGAGGGGGCGGAGAAATCGAGCTTTTATGTGACAGAAAACATG
JMSF052H10+ TTTGCCCAGCTAGTGACCGAGGGGGCGGAGAAATCGAGCTTTTATGTGACAGAAAACATG
JMSF042L02+ TTTGCCCAGCTAGTGACCGAGGGGGCGGAGAAATCGAGCTTTTATGTGACAGAAAACATG
JMSF047J07+ TTTGCCCAGCTAGTGACCGAGGGGGCGGAGAAATCGAGCTTTTATGTGACAGAAAACATG
JMSF047E02+ TTTGCCCAGCTAGTGACCGAGGGGGCGGAGAAATCGAGCTTTTATGTGACAGAAAACATG
____________________________________________________________
consensus TTTGCCCAGCTAGTGACCGAGGGGGCGGAGAAATCGAGCTTTTATGTGACAGAAAACATG
. : . : . : . : . : . :
JMSF051F22+ GGAAATGACAAAGTTCATGAGGATCCAAAGCAAGAATCCTAGAATAGTTGAGCCACTAAG
JMSF052H10+ GGAAATGACAAAGTTCATGAGGATCCAAAGCAAGAATCCTAGAATAGTTGAGCCACTAAG
JMSF042L02+ GGAAATGACAAAGTTCATGAGGATCCAAAGCAAGAATCCTAGAATAGTTGAGCCACTAAG
JMSF047J07+ GGAAATGACAAAGTTCATGAGGATCCAAAGCAAGAATCCTAGAATAGTTGAGCCACTAAG
JMSF047E02+ GGAAATGACAAAGTTCATGAGGATCCAAAGCAAGAATCCTAGAATAGTTGAGCCACTAAG
____________________________________________________________
consensus GGAAATGACAAAGTTCATGAGGATCCAAAGCAAGAATCCTAGAATAGTTGAGCCACTAAG
. : . : . : . : . : . :
JMSF051F22+ AAGGGAGAGAAGTGCCTTAGCGGCTCAAATGAGTTCTTGCTTTCGTTTTCGCTTTGAAGG
JMSF052H10+ AAGGGAGAGAAGTGCCTTAGCGGCTCAAATGAGTTCTTGCTTTCGTTTTCGCTTTGAAGG
JMSF042L02+ AAGGGAGAGAAGTGCCTTAGCGGCTCAAATGAGTTCTTGCTTTCGTTTTCGCTTTGAAGG
JMSF047J07+ AAGGGAGAGAAGTGCCTTAGCGGCTCAAATGAGTTCTTGCTTTCGTTTTCGCTTTGAAGG
JMSF047E02+ AAGGGAGAGAAGTGCCTTAGCGGCTCAAATGAGTTCTTGCTTTCGTTTTCGCTTTGAAGG
____________________________________________________________
consensus AAGGGAGAGAAGTGCCTTAGCGGCTCAAATGAGTTCTTGCTTTCGTTTTCGCTTTGAAGG
. : . : . : . : . : . :
JMSF051F22+ TTGGGAGAGAGAGAGAGAGAGAGAAAATGGAGAAAGGAAATTCTAGCGCATTCGCCAACC
JMSF052H10+ TTGGGAGAGAGAGAGAGAGAGAGAAAATGGAGAAAGGAAATTCTAGCGCATTCGCCAACC
JMSF042L02+ TTGGGAGAGAGAGAGAGAGAGAGAAAATGGAGAAAGGAAATTCTAGCGCATTCGCCAACC
JMSF047J07+ TTGGGAGAGAGAGAGAGAGAGAGAAAATGGAGAAAGGAAATTCTAGCGCATTCGCCAACC
JMSF047E02+ TTGGGAGAGAGAGAGAGAGAGAGAAAATGGAGAAAGGAAATTCTAGCGCATTCGCCAACC
____________________________________________________________
consensus TTGGGAGAGAGAGAGAGAGAGAGAAAATGGAGAAAGGAAATTCTAGCGCATTCGCCAACC
. : . : . : . : . : . :
JMSF051F22+ TGGAGGCTGGAGAAGGTGATTATCGTCGACGAATGACGACGATTGGGT
JMSF052H10+ TGGAGGCTGGAGAAGGTGATTATCGTCGACGAATGACGACGATTGGGT
JMSF042L02+ TGGAGGCTGGAGAAGGTGATTATCGTCGACGAATGACGACGATTGGGT
JMSF047J07+ TGGAGGCTGGAGAAGGTGATTATCGTCGACGAATGACGACGATTGGGTGAAGAAGAAGCC
JMSF047E02+ TGGAGGCTGGAGAAGGTGATTATCGTCGACGAATGACGACGATTGGGTGAAGAAGAAGCC
____________________________________________________________
consensus TGGAGGCTGGAGAAGGTGATTATCGTCGACGAATGACGACGATTGGGTGAAGAAGAAGCC
. : . : . : . : . : . :
JMSF047J07+ TGAAAGACGGCAAATTATCCATTATTAATAAGAACCCGAAT
JMSF047E02+ TGAAAGACGGCAAATTATCCATTATTAATAAGAACCCGAATATGCTGTGCATCAATGGCC
____________________________________________________________
consensus TGAAAGACGGCAAATTATCCATTATTAATAAGAACCCGAATATGCTGTGCATCAATGGCC