| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001E06 | Sequence | 514 | 009546 (8) | gb|ACT82771.1| | 3e-99 | actin, partial [Nicotiana tabacum] | 780 | 009546 (8) | gb|ADE05541.1| | 2e-116 | actin [Liriodendron tulipifera] |
| JMFF006B16 | Sequence | 559 | 009546 (8) | ref|XP_009594162.1| | 6e-111 | PREDICTED: actin-104 [Nicotiana tomentosiformis] | 780 | 009546 (8) | gb|ADE05541.1| | 1e-115 | actin [Liriodendron tulipifera] |
| JMFN011H01 | Sequence | 642 | 009546 (8) | ref|NP_001291342.1| | 6e-149 | uncharacterized protein LOC105159390 [Sesamum indicum] ref|XP_011074741.1| PREDI | |||||
| JMFS064D04 | Sequence | 613 | 009546 (8) | ref|XP_006359824.1| | 2e-49 | PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Solanum tuberosum] | |||||
| JMSF047C24 | Sequence | 658 | 009546 (8) | ref|XP_009787561.1| | 2e-125 | PREDICTED: actin-104 [Nicotiana sylvestris] ref|XP_009787562.1| PREDICTED: actin | 641 | 009546 (8) | tpg|DAA51050.1| | 2e-87 | TPA: putative actin family protein [Zea mays] |
This contig is upended
. : . : . : . : . : . :
JMFS064D04- GAAACTAAACATCCTGTTGCTCAAGCATCCTGCCATA
____________________________________________________________
consensus GAAACTAAACATCCTGTTGCTCAAGCATCCTGCCATA
. : . : . : . : . : . :
JMFS064D04- TTCTATGTTTCAAACAGGTACCAGATATACACTGTTCTCCTCAGAGAAGCGTACGATGGA
____________________________________________________________
consensus TTCTATGTTTCAAACAGGTACCAGATATACACTGTTCTCCTCAGAGAAGCGTACGATGGA
. : . : . : . : . : . :
JMFS064D04- TCTGAGCTCATCGACAAGGATCCTCTTGTCGTTGTAAAGGAGAAATTCGGAGAACTAATG
____________________________________________________________
consensus TCTGAGCTCATCGACAAGGATCCTCTTGTCGTTGTAAAGGAGAAATTCGGAGAACTAATG
. : . : . : . : . : . :
JMFS064D04- CAAGAGGGCCTGCATGAGTACAACCGGCGACACCACTTGCTAAATTTAGAGAAAAAGAGG
____________________________________________________________
consensus CAAGAGGGCCTGCATGAGTACAACCGGCGACACCACTTGCTAAATTTAGAGAAAAAGAGG
. : . : . : . : . : . :
JMFS064D04- AAGAGGGGCATTGTAGCAGTAGAACCACAGAAAAGAGGAAACCAAAATGGTGAAGTTTCA
____________________________________________________________
consensus AAGAGGGGCATTGTAGCAGTAGAACCACAGAAAAGAGGAAACCAAAATGGTGAAGTTTCA
. : . : . : . : . : . :
JMFS064D04- GAGAAGGATGATGATCAAGTTGGTGGAGGAGATCTTGGTGGCATATTTGACCCAGAAGAA
____________________________________________________________
consensus GAGAAGGATGATGATCAAGTTGGTGGAGGAGATCTTGGTGGCATATTTGACCCAGAAGAA
. : . : . : . : . : . :
JMFS064D04- AGGAAACGATTCTATAGAGTTCTCTTTGATGACAGTTCCCCATAAGCTTTAGTGCAGAAG
____________________________________________________________
consensus AGGAAACGATTCTATAGAGTTCTCTTTGATGACAGTTCCCCATAAGCTTTAGTGCAGAAG
. : . : . : . : . : . :
JMFS064D04- ATCCTATGCTCAATGCAGTTCCCCATTACCAGGTACTTTTGTAACCCATGAAAAATAATA
____________________________________________________________
consensus ATCCTATGCTCAATGCAGTTCCCCATTACCAGGTACTTTTGTAACCCATGAAAAATAATA
. : . : . : . : . : . :
JMFS064D04- ATCTATTATGGATATCAAGTTTATCAACTACTTCTGTTTCAAGTTTTCATGATCATTACA
rJMFF006B16- CTATTATGGATATCAAGTTTATCAACTACTTCTGTTTCAAGTTTTCATGATCATTACA
rJMFF001E06- CTATTATGGATATCAAGTTTATCAACTACTTCTGTTTC-AGTTTTCATGATCATTACA
____________________________________________________________
consensus ATCTATTATGGATATCAAGTTTATCAACTACTTCTGTTTCAAGTTTTCATGATCATTACA
. : . : . : . : . : . :
JMFS064D04- CAACCAAACAACACAACAATCCAATGCTGACATAGTACATATAATATACTACATAGATAG
rJMFF006B16- CAACCAAACAACACAACAATCCAATGCTGACATAGTACATATAATATACTACATAGATAG
rJMFF001E06- CAACCAAACAACACAACAATCCAATGCTGACATAGTACATATAATATACTACATAGATAG
____________________________________________________________
consensus CAACCAAACAACACAACAATCCAATGCTGACATAGTACATATAATATACTACATAGATAG
. : . : . : . : . : . :
JMFS064D04- CANACATACTCTAAATGACCATATAATGTCACAATG
rJMFF006B16- CAAACATACTCTAAATGACCATATAATGTCACAATGTGTGTTTTTTTTCTTCCTTGTATC
rJMFF001E06- CAAACATACTCTAAATGACCATATAATGTCACAATGTGTGTTTTTTTTCTTCCTTGTATC
____________________________________________________________
consensus CAAACATACTCTAAATGACCATATAATGTCACAATGTGTGTTTTTTTTCTTCCTTGTATC
. : . : . : . : . : . :
rJMFF006B16- TATAGTTCAAAACTGCAAGCCAAGCCAATCCAAGCCAAGCCACACTAAGAAACCTTCACA
rJMFF001E06- TATAGTTCAAAACTGCAAGCCAAGCCAATCCAAGCCAAGCCACACTAAGAAACCTTCACA
____________________________________________________________
consensus TATAGTTCAAAACTGCAAGCCAAGCCAATCCAAGCCAAGCCACACTAAGAAACCTTCACA
. : . : . : . : . : . :
rJMFF006B16- AATACACTCATCCAAGCTTAGAACTTTAGAAGCACTTCCTGTGAACAATTGCGGGACCGG
rJMSF047C24- AAGCACTTCCTGTGAACAATTGCGGGACCGG
rJMFF001E06- AATACACTCATCCAAGCTTAGAACTTTAGAAGCACTTCCTGTGAACAATTGCGGGACCGG
JMFN011H01+ ACCGG
____________________________________________________________
consensus AATACACTCATCCAAGCTTAGAACTTTAGAAGCACTTCCTGTGAACAATTGCGGGACCGG
. : . : . : . : . : . :
rJMFF006B16- ACTCATCATACTCAGCTTTCGAAATCCACATCTGTTGGAAAGTACTTAGTGATGCCAGAA
rJMSF047C24- ACTCATCGTACTCAGCTTTCGAAATCCACATCTGTTGGAAAGTACTTAGTGATGCCAGAA
rJMFF001E06- ACTCATCATACTCAGCTTTCGAAATCCACATCTGTTGGAAAGTACTTAGTGATGCCAGAA
JMFN011H01+ ACTCATCATACTCAGCTTTCGAAATCCACATCTGTTGGAAAGTACTTAGTGATGCCAGAA
____________________________________________________________
consensus ACTCATCATACTCAGCTTTCGAAATCCACATCTGTTGGAAAGTACTTAGTGATGCCAGAA
. : . : . : . : . : . :
rJMFF006B16- TTGAGCCTCCAATCCAGACACTGTACTTCCTCTCGGGTGGTGCAACGACCTTGATCTTCA
rJMSF047C24- TTGAGCCTCCAATCCAGACACTGTACTTCCTCTCGGGTGGTGCAACGACCTTGATCTTCA
rJMFF001E06- TTGAGCCTCCAATCCAGACACTGTACTTCCTCTCGGGTGGTGCAACGACCTTGATCTTCA
JMFN011H01+ TTGAGCCTCCAATCCAGACACTGTACTTCCTCTCGGGTGGTGCAACGACCTTGATCTTCA
____________________________________________________________
consensus TTGAGCCTCCAATCCAGACACTGTACTTCCTCTCGGGTGGTGCAACGACCTTGATCTTCA
. : . : . : . : . : . :
rJMFF006B16- TACTGCTGGGAGCGAGTGCTGTAATTTCCTTGCTCATGCGATCGGCAATACCCGGGAACA
rJMSF047C24- TACTGCTGGGAGCGAGTGCTGTAATTTCCTTGCTCATGCGATCGGCAATNCCCGGGAACA
rJMFF001E06- TACTGCTGGGAGCGAGTGCTGTAATTTCCTTGCTCATGCGATCGGCAATACCCGGGAACA
JMFN011H01+ TACTGCTGGGAGCGAGTGCTGTAATTTCCTTGCTCATGCGATCGGCAATACCCGGGAACA
____________________________________________________________
consensus TACTGCTGGGAGCGAGTGCTGTAATTTCCTTGCTCATGCGATCGGCAATACCCGGGAACA
. : . : . : . : . : . :
rJMFF006B16- TAGTTGAACCGCCACTAAGCACGACGTTTCCATACAAATCTTTCCTGATATCCACGTCAC
rJMSF047C24- TAGTTGAACCGCCACTANGCACGACGTTNCCNTACNAATCTTTCCTGATATCCACGTCAC
rJMFF001E06- TAGTTGAACCGCCACTAAGCACGACGTTTCCATACAAATCTTTCCTGATATCCACGTCAC
JMFN011H01+ TAGTTGAACCGCCACTAAGCACGACGTTTCCATACAAATCTTTCCTGATATCCACGTCAC
____________________________________________________________
consensus TAGTTGAACCGCCACTAAGCACGACGTTTCCATACAAATCTTTCCTGATATCCACGTCAC
. : . : . : . : . : . :
rJMFF006B16- ATTTCATGATGGAGTTGTAGGTTGTTTCGTGAATTCCAGCAGCTTCCATTCCAATAAACG
rJMSF047C24- ATTTCATGATGGAGTTGTAGGTTGTTTCGTGAATTCCAGCAGCTTCCATTCCAATAAACG
rJMFF001E06- ATTTCATGATGGAGTTGTAGGTTGTTTCGTGAATTCCAGCAGCTTCCATTCCAATAAACG
JMFN011H01+ ATTTCATGATGGAGTTGTAGGTTGTTTCGTGAATTCCAGCAGCTTCCATTCCAATAAACG
____________________________________________________________
consensus ATTTCATGATGGAGTTGTAGGTTGTTTCGTGAATTCCAGCAGCTTCCATTCCAATAAACG
. : . : . : . : . : . :
rJMFF006B16- ATGGCTGGAAAAGAACTTCAGGACAACGAAATCTCTCGGCACCTATAGTTATTACTTGTC
rJMSF047C24- ATGGCTGGAAAAGAACTTCNNGACAACGAANTCTCTCGGCACCTATAGNTATTACTTGTC
rJMFF001E06- ATGGCTGGAAAAGAACTTCAGGACAACGAAATCTCTCGGCACCTATAGTTATTACTTGTC
JMFN011H01+ ATGGCTGGAAAAGAACTTCAGGACAACGAAATCTCTCGGCACCTATAGTTATTACTTGTC
____________________________________________________________
consensus ATGGCTGGAAAAGAACTTCAGGACAACGAAATCTCTCGGCACCTATAGTTATTACTTGTC
. : . : . : . : . : . :
rJMFF006B16- CATCCGGCAGCTCATAGCTCTTCTCAACAGTCGAGCTGTTCTTTGCTGTATCCAGTTCTT
rJMSF047C24- NATCCGGCAGCTCATAGCTCNTCTCAACAG
rJMFF001E06- CATCCGGCAGCTCATAGCTCTTCTCAACAGTCGAGCTGTTCTTTGCTGTATCCAGTTCTT
JMFN011H01+ CATCCGGCAGCTCATAGCTCTTCTCAACAGTCGAGCTGTTCTTTGCTGTATCCAGTTCTT
____________________________________________________________
consensus CATCCGGCAGCTCATAGCTCTTCTCAACAGTCGAGCTGTTCTTTGCTGTATCCAGTTCTT
. : . : . : . : . : . :
rJMFF006B16- GTTCAAAATCCAATGCAACGTAAGCAAGCTTCTCCTTCACATCGCGCACAATTTCTCG
rJMFF001E06- GTTCAAAATCCAATGCAACGTAAGCAAGCTTCTCCTTCACATCGCGCACAATTTCTCG
JMFN011H01+ GTTCAAAATCCAATGCAACGTAAGCAAGCTTCTCCTTCACATCGCGCACAATTTCTCGTT
____________________________________________________________
consensus GTTCAAAATCCAATGCAACGTAAGCAAGCTTCTCCTTCACATCGCGCACAATTTCTCGTT
. : . : . : . : . : . :
JMFN011H01+ CAGCCGTCGTGGTAAATGTGTAACCTTTCTCGGTGAGAATCTTCATGAGATAATCCGTGA
____________________________________________________________
consensus CAGCCGTCGTGGTAAATGTGTAACCTTTCTCGGTGAGAATCTTCATGAGATAATCCGTGA
. : . : . : . : . : . :
JMFN011H01+ GGTCACGCCCAGCAAGATCCAAACGTAAAATAGCATGGGGAAGTGCATATCCCTCGTAAA
JMSF047C24+ TCACGCCCAGCAAGATCCAAACGTAAAATAGCANGGGGAAGTGCATATCCCTCGTAAA
____________________________________________________________
consensus GGTCACGCCCAGCAAGATCCAAACGTAAAATAGCATGGGGAAGTGCATATCCCTCGTAAA
. : . : . : . : . : . :
JMFN011H01+ TGGGGACCGTGTGGCTCACACCATCACCCGAGTCCAG
JMFF006B16+ ACACCATCACCCGAGTCCAGCACAATACCAGTTGTTCGACCAC
JMFF001E06+ CAC
JMSF047C24+ TGGGGACCGTGTGGCTCACACCATCACCCGAGTCCAGCACAATACCAGTTGTTNGACCAC
____________________________________________________________
consensus TGGGGACCGTGTGGCTCACACCATCACCCGAGTCCAGCACAATACCAGTTGTTCGACCAC
. : . : . : . : . : . :
JMFF006B16+ TAGCATACAAGGAGAGAACGGCCTGAATGGCAACATACATAGCGGGCACGTTGAAGGTCT
JMFF001E06+ TAGCATACAAGGAGAGAACGGCNTGAATGGCAACATACATAGCGGGCACGTTGAAGGTCT
JMSF047C24+ TAGCATACAAGGAGAGAACGGCCNGAATGGCAACATACATAGCGGGCACGTTGAAGGTCT
____________________________________________________________
consensus TAGCATACAAGGAGAGAACGGCCTGAATGGCAACATACATAGCGGGCACGTTGAAGGTCT
. : . : . : . : . : . :
JMFF006B16+ CGAACATGATCTGAGTCATTTTCTCTCGATTTGCCTTGGGGTTAAGGGGTGCCTCGGTGA
JMFF001E06+ CGAACATGATCTGAGTCATTTTCTCTCGATTTGCCTTGGGGTTAAGGGGTGCCTCGGTGA
JMSF047C24+ CGAACATGATCTGAGTCATTTTCTCTCGATTTGCCTTGGGGTTAAGGGGTGCCTCGGTGA
____________________________________________________________
consensus CGAACATGATCTGAGTCATTTTCTCTCGATTTGCCTTGGGGTTAAGGGGTGCCTCGGTGA
. : . : . : . : . : . :
JMFF006B16+ GAAGAACAGAATGCTCATCTGGAGCAACGCGGAGCTCATTGTAAAAGGTATGATGCCAAA
JMFF001E06+ GAAGAACAGAATGCTCATCTGGAGCAACGCGGAGCTCATTGTAAAAGGTATGATGCCAAA
JMSF047C24+ GAAGAACAGGATGCTCATCTGGAGCAACGCGGAGCTCATTGTAAAAGGTATGATGCCAAA
____________________________________________________________
consensus GAAGAACAGAATGCTCATCTGGAGCAACGCGGAGCTCATTGTAAAAGGTATGATGCCAAA
. : . : . : . : . : . :
JMFF006B16+ TTTTCTCCATATCATCCCAGTTGCTCACTATTCCATGCTCAATGGGGTACTTCAATGTAA
JMFF001E06+ TTTTCTCCATATCATCCCAGTTGCTCACTATTCCATGCTCAATGGGGTACTTCAATGTAA
JMSF047C24+ TTTTCTCCATATCATCCCAGTTGCTCACTATTCCATGCTCAATGGGGTACTTCAATGTAA
____________________________________________________________
consensus TTTTCTCCATATCATCCCAGTTGCTCACTATTCCATGCTCAATGGGGTACTTCAATGTAA
. : . : . : . : . : . :
JMFF006B16+ GAATTCCTCTCTTAGACTGAGCTTCATCTCCAACATAAGCATCCTTTTGTCCCATACCAA
JMFF001E06+ GAATTCCTCTCTTAGACTGAGCTTCATCTCCAACATAAGCATCCTTTTGTCCCATACCAA
JMSF047C24+ GAATTCCTCTCTTAGANTGAGCTTCATCTCCAACATAAGCATCCTTTTGTCCCATACCAA
____________________________________________________________
consensus GAATTCCTCTCTTAGACTGAGCTTCATCTCCAACATAAGCATCCTTTTGTCCCATACCAA
. : . : . : . : . : . :
JMFF006B16+ CCATCACACC
JMFF001E06+ CCATCACACC
JMSF047C24+ CCATCACACCTTGGTGTCTTGGACGACCAACTATACTCGGGAAGACTGCCCTAGGAGCAT
____________________________________________________________
consensus CCATCACACCTTGGTGTCTTGGACGACCAACTATACTCGGGAAGACTGCCCTAGGAGCAT
. : . : . : . : . : . :
JMSF047C24+ CATCACCAGCAAAACCAGCCTTAACCATTCCGGTTCCATTGTCAACAACAAGTGGTTGAA
____________________________________________________________
consensus CATCACCAGCAAAACCAGCCTTAACCATTCCGGTTCCATTGTCAACAACAAGTGGTTGAA
. : . : . : . : . : . :
JMSF047C24+ CTTCCTCCCCCTCTGCCATCTTATCTTACCCTGATCAGAGCAAGGACCTTTTCCTGCTGC
____________________________________________________________
consensus CTTCCTCCCCCTCTGCCATCTTATCTTACCCTGATCAGAGCAAGGACCTTTTCCTGCTGC
. : . : . : . : . : . :
JMSF047C24+ TTTACTTTCTAGTATAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGTTGGCAATCC
____________________________________________________________
consensus TTTACTTTCTAGTATAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGTTGGCAATCC