Contig 009537:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF046I23Sequence674009537 (2)ref|XP_004231534.1|8e-44PREDICTED: transport and Golgi organization 2 homolog [Solanum lycopersicum]754009537 (2)ref|XP_004231534.1|6e-97PREDICTED: transport and Golgi organization 2 homolog [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF046I23- ATGATCATAATAGCAATACAACACAAATCCAAGTAAGTTTAAACAGAATCATAGAATT
                      ____________________________________________________________
consensus ATGATCATAATAGCAATACAACACAAATCCAAGTAAGTTTAAACAGAATCATAGAATT
 
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rJMSF046I23- TATGGGCCGGGGTTGGAGATTTCTCAATCTTGAAGGAAATGGTTTGTTCCTTCCACAAAT
                      ____________________________________________________________
consensus TATGGGCCGGGGTTGGAGATTTCTCAATCTTGAAGGAAATGGTTTGTTCCTTCCACAAAT
 
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rJMSF046I23- CATTCTCAAGACACATCTCATAGAAGTTGACCTCTAGGGAATTCTTGATAGCCAATGCAG
                      ____________________________________________________________
consensus CATTCTCAAGACACATCTCATAGAAGTTGACCTCTAGGGAATTCTTGATAGCCAATGCAG
 
. : . : . : . : . : . :
rJMSF046I23- AAGTACTTCTAGTGCCATAACGCCCCACCAAATCTTCTTCTGCTTCAACAAATATGGAAC
                      ____________________________________________________________
consensus AAGTACTTCTAGTGCCATAACGCCCCACCAAATCTTCTTCTGCTTCAACAAATATGGAAC
 
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rJMSF046I23- TATATTGGTACTCCCTTTCAGGTGCATAGATGCCAGGAAGAAGGTTCCTTTCCTCATCTT
                      ____________________________________________________________
consensus TATATTGGTACTCCCTTTCAGGTGCATAGATGCCAGGAAGAAGGTTCCTTTCCTCATCTT
 
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rJMSF046I23- TTGTTGTGTCTTTCATCAATTGTTTCCCCACTGACTCCAATGGAATTTCAGATTCACCAT
                      ____________________________________________________________
consensus TTGTTGTGTCTTTCATCAATTGTTTCCCCACTGACTCCAATGGAATTTCAGATTCACCAT
 
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rJMSF046I23- ATTCTTCCAACACCAACTTGAAACCTTTTTGTAACCGTTGAGCCTTAGGCCACGGAGAGT
                      ____________________________________________________________
consensus ATTCTTCCAACACCAACTTGAAACCTTTTTGTAACCGTTGAGCCTTAGGCCACGGAGAGT
 
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rJMSF046I23- CTAGTGATGCATTTGTCAAGACATGAATACCAGGCGATACCTCTGTCACTGATACACCTC
                      ____________________________________________________________
consensus CTAGTGATGCATTTGTCAAGACATGAATACCAGGCGATACCTCTGTCACTGATACACCTC
 
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rJMSF046I23- TGTCTTTTGGTCTGTTGGTTATATAAAACATGGTCATGGAACAGATATCAACTACTATCA
                      ____________________________________________________________
consensus TGTCTTTTGGTCTGTTGGTTATATAAAACATGGTCATGGAACAGATATCAACTACTATCA
 
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rJMSF046I23- GGTTAAACCCACCAAAATGGTCAGCTTCTGCCATAAGTTCCTCCGCGAAATCACGAGGGC
JMSF046I23+ GAAATCACGAGGGC
                      ____________________________________________________________
consensus GGTTAAACCCACCAAAATGGTCAGCTTCTGCCATAAGTTCCTCCGCGAAATCACGAGGGC
 
. : . : . : . : . : . :
rJMSF046I23- TCTTATTGCTCCGTAAGAAGCGAACAGGAAGGTCTCCTCTGCTCTTGGTATGAGAAGACG
JMSF046I23+ TCTTATTGCTCCGTAAGAAGCGAACAGGAAGGTCTCCTCTGCTCTTGGTATGAGAAGACG
                      ____________________________________________________________
consensus TCTTATTGCTCCGTAAGAAGCGAACAGGAAGGTCTCCTCTGCTCTTGGTATGAGAAGACG
 
. : . : . : . : . : . :
rJMSF046I23- GCAAATCGACGACCTCCCGGACATTGGTAAGGAAAGCGATTTTTCCCTTGAGGTTACAGC
JMSF046I23+ GCAAATCGACGACCTCCCGGACATTGGTAAGGAAAGCGATTTTTCCCTTGAGGTTACAGC
                      ____________________________________________________________
consensus GCAAATCGACGACCTCCCGGACATTGGTAAGGAAAGCGATTTTTCCCTTGAGGTTACAGC
 
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rJMSF046I23- CTAGCCAAGTCCCACCGGCGAGAACGTCTCTTCCTC
JMSF046I23+ CTAGCCAAGTCCCACCGGCGAGAACGTCTCTTCCTCCAAGAATCACACCATCCTCCCACC
                      ____________________________________________________________
consensus CTAGCCAAGTCCCACCGGCGAGAACGTCTCTTCCTCCAAGAATCACACCATCCTCCCACC
 
. : . : . : . : . : . :
JMSF046I23+ ACGCCAAAGCCTTCGTCGGCCGATCATAGTATTCGTCCCGGTTGAGGAACAGAAGAAAGG
                      ____________________________________________________________
consensus ACGCCAAAGCCTTCGTCGGCCGATCATAGTATTCGTCCCGGTTGAGGAACAGAAGAAAGG
 
. : . : . : . : . : . :
JMSF046I23+ GGTAGATCGGATGAGCTTTCCATTGGAATGCAGCTATACACATTGTGTTTCATCAATTCA
                      ____________________________________________________________
consensus GGTAGATCGGATGAGCTTTCCATTGGAATGCAGCTATACACATTGTGTTTCATCAATTCA
 
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JMSF046I23+ CACCAAAGCTAGAAGCGTTGACCTGAGGAAGCTGAATGGTCACTTTGTTTGGGAATAGGC
                      ____________________________________________________________
consensus CACCAAAGCTAGAAGCGTTGACCTGAGGAAGCTGAATGGTCACTTTGTTTGGGAATAGGC
 
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JMSF046I23+ GACAAGGGGAGTGAGCAGTTTCACAGTCTTGGGTGTCTCTTTGCTTCTTTCATGCAATCT
                      ____________________________________________________________
consensus GACAAGGGGAGTGAGCAGTTTCACAGTCTTGGGTGTCTCTTTGCTTCTTTCATGCAATCT
 
. : . : . : . : . : . :
JMSF046I23+ CCCAAAACTATCCAGGAAAGCAAGATCAAGTAGTGCTGTCTGGTTCCTTCAACCTTGGCT
                      ____________________________________________________________
consensus CCCAAAACTATCCAGGAAAGCAAGATCAAGTAGTGCTGTCTGGTTCCTTCAACCTTGGCT
 
. : . : . : . : . : . :
JMSF046I23+ ACCGATTCTCATATGAGCGTCGTAAAAGATGTTAGATTAATGGCTAGACGAGTATGAACG
                      ____________________________________________________________
consensus ACCGATTCTCATATGAGCGTCGTAAAAGATGTTAGATTAATGGCTAGACGAGTATGAACG
 
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JMSF046I23+ GAGGTCGAAACCGTTTGTTCTTGTGACTGGAGAAGTGATCGATAGAGGAGAGAGCGTTCA
                      ____________________________________________________________
consensus GAGGTCGAAACCGTTTGTTCTTGTGACTGGAGAAGTGATCGATAGAGGAGAGAGCGTTCA
 
. : . : . : . : . : . :
JMSF046I23+ GACATGCGAGGGAGGCAACGGGAGAAGAAGATGAATGGAGGATGATGTCTGCGCAGAGAC
                      ____________________________________________________________
consensus GACATGCGAGGGAGGCAACGGGAGAAGAAGATGAATGGAGGATGATGTCTGCGCAGAGAC