| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012C07 | Sequence | 472 | 009535 (6) | ref|XP_009774944.1| | 1e-46 | PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Nicotiana sylvestris] | 774 | 009535 (6) | ref|XP_004237702.1| | 3e-105 | PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Solanum lycopersicum] ref|XP_ |
| JMSF037K15 | Sequence | 657 | 009535 (6) | ref|XP_009774944.1| | 2e-95 | PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Nicotiana sylvestris] | 734 | 009535 (6) | ref|XP_004237702.1| | 3e-96 | PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Solanum lycopersicum] ref|XP_ |
| JMSF046F14 | Sequence | 752 | 009535 (6) | ref|XP_009774944.1| | 4e-104 | PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Nicotiana sylvestris] | 791 | 009535 (6) | ref|XP_004237702.1| | 3e-110 | PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Solanum lycopersicum] ref|XP_ |
This contig is upended
. : . : . : . : . : . :
rJMSF037K15- AAATGCAATGGCATTGAATTCCACAAGATTTGTCAGT
rJMSF012C07- AATGCAATGGCATTGAATTCCACAAGATTTGTCAGT
rJMSF046F14- AATGCAATGGCATTGAATTCCACAAGATTTGTCAGT
____________________________________________________________
consensus AAATGCAATGGCATTGAATTCCACAAGATTTGTCAGT
. : . : . : . : . : . :
rJMSF037K15- CAAATGATCATCTGTATGAATGCAATACATACAAAAGATCTTGAAACAAATTCATGTCTC
rJMSF012C07- CAAATGATCATCTGTATGAATGCAATACATACAAAAGATCCTGAAACAAATTCATGTCTC
rJMSF046F14- CAAATGATCATCTGTATGAATGCAATACATACAAAAAATCTTGAAACAAATTCATGTCTC
____________________________________________________________
consensus CAAATGATCATCTGTATGAATGCAATACATACAAAAGATCTTGAAACAAATTCATGTCTC
. : . : . : . : . : . :
rJMSF037K15- TATGGAACCAGTAGGCTTCAGAATCCCCAATCTGGACTAGCATATATGCATTCTGCACTT
rJMSF012C07- TATGGAACCAGTAGGCTTCAGAATCCCCAATCTGGACTAGCATATATGCATTCTGCACTT
rJMSF046F14- TATGGAACCAGTAGGCTTCAGAATCCCCAATCTGGACTAGCATATATGCATTCTGCACTT
____________________________________________________________
consensus TATGGAACCAGTAGGCTTCAGAATCCCCAATCTGGACTAGCATATATGCATTCTGCACTT
. : . : . : . : . : . :
rJMSF037K15- TGTCAAACGCTCTTTTGTACATGTTATAGCAGAAAGGTTGCAAGTGCTTGGAAGATAGAC
rJMSF012C07- TGTCAAACGCTCTTTTGTACATGTTATAGCAGAAAGGTTGCAAGTGCTTGGAAGATAGAC
rJMSF046F14- TGTCAAACGCTCTTTTGTACATGTTATAGCAGAAAGGTTGCAAGTGCTTGGAAGATAGAC
____________________________________________________________
consensus TGTCAAACGCTCTTTTGTACATGTTATAGCAGAAAGGTTGCAAGTGCTTGGAAGATAGAC
. : . : . : . : . : . :
rJMSF037K15- TTGGCGCTTCCCCAAATGTTATGAGGTCCAGAATCTTGCCTTGCACCAGATGACACTCCA
rJMSF012C07- TTGGCGCTTCCCCAAATGTTATGAGGTCCAGAATCTTGCCTTGCACCAGATGACACTCCA
rJMSF046F14- TTGGCGCTTCCCCAAATGTTATGAGGTCCAGAATCTTGCCTTGCACCAGATGACACTCCA
____________________________________________________________
consensus TTGGCGCTTCCCCAAATGTTATGAGGTCCAGAATCTTGCCTTGCACCAGATGACACTCCA
. : . : . : . : . : . :
rJMSF037K15- TTGATATGATCTCCCGGTCTTCCCTTTACTGCATCCTTGAGGGGCCCCCAGCATTCAACG
rJMSF012C07- TTGATATGATCTCCCGGTCTTCCCTTTACTGCATCCTTGAGGGGCCCCCAGCATTCAACG
rJMSF046F14- TTGATATGATCTCCCGGTCTTCCCTTTACTGCATCCTTGAGGGGCCCCCAGCATTCAACG
JMSF037K15+ G
JMSF046F14+ CTGCATCCTTGAGGGGCCCCCAGCATTCAACG
____________________________________________________________
consensus TTGATATGATCTCCCGGTCTTCCCTTTACTGCATCCTTGAGGGGCCCCCAGCATTCAACG
. : . : . : . : . : . :
rJMSF037K15- TGGTTGTATTTCTTTGAGCTAGAATGGAAGAAGACTCGAACTAAAGCATTCGTTAGCTCG
rJMSF012C07- TGGTTGTATTTCTTTGAGCTAGAATGGAAGAAGACTCGAACTAAAGCATTCGTTAGCTCG
rJMSF046F14- TGGTTGTATTTCTTTGAGCTAGAATGGAAGAAGACTCGAACTAAAGCATTCGTTAGCTCG
JMSF037K15+ TGGTTGTATTTCTTTGAGCTAGAATGGAAGAAGACTCGAACTAAAGCATTCGTTAGCTCG
JMSF046F14+ TGGTTGTATTTCTTTGAGCTAGAATGGAAGAAGACTCGAACTAAAGCATTCGTTAGCTCG
____________________________________________________________
consensus TGGTTGTATTTCTTTGAGCTAGAATGGAAGAAGACTCGAACTAAAGCATTCGTTAGCTCG
. : . : . : . : . : . :
rJMSF037K15- GGATTCTCTTCGAAGAGAACTGAATCACCATATAAGACAGCCTCGAGTACCAAAGGCAAT
rJMSF012C07- GGATTCTCTTCGAAGAGAACTGAATCACCATATAAGACAGCCTCGAGTACCAAAGGCAAT
rJMSF046F14- GGATTCTCTTCGAAGAGAACTGAATCACCATATAAGACAGCCTCGAGTACCAAAGGCAAT
JMSF037K15+ GGATTCTCTTCGAAGAGAACTGAATCACCATATAAGACAGCCTCGAGTACCAAAGGCAAT
JMSF046F14+ GGATTCTCTTCGAAGAGAACTGAATCACCATATAAGACAGCCTCGAGTACCAAAGGCAAT
____________________________________________________________
consensus GGATTCTCTTCGAAGAGAACTGAATCACCATATAAGACAGCCTCGAGTACCAAAGGCAAT
. : . : . : . : . : . :
rJMSF037K15- TCCTTGGAGAAAATTAGGTATCTAAACTCTGCAGCTAACTCCTGCAAGAGATTCGGTCCA
rJMSF012C07- TCCTTGGAGAAAATTAGGTATCTAAACTCTGCAGCTAACTCCTGCAAGAGATTCGGTCCA
rJMSF046F14- TCCTTGGAGAAAATTAGGTATCTAAACTCTGCAGCTAACTCCTGCAAGAGATTCGGTCCA
JMSF037K15+ TCCTTGGAGAAAATTAGGTATCTAAACTCTGCAGCTAACTCCTGCAAGAGATTCGGTCCA
JMSF046F14+ TCCTTGGAGAAAATTAGGTATCTAAACTCTGCAGCTAACTCCTGCAAGAGATTCGGTCCA
____________________________________________________________
consensus TCCTTGGAGAAAATTAGGTATCTAAACTCTGCAGCTAACTCCTGCAAGAGATTCGGTCCA
. : . : . : . : . : . :
rJMSF037K15- CTCACATAGCAATGGACATCAAGGCACATGTTTCCCTTCTCTTGTGTCCATTCAGCCACC
rJMSF012C07- CTCACATAGCAATGGACATCAAGGCACATGTTTCCCTTCTCTTGTGTCCATTCAGCCACC
rJMSF046F14- CTCACATAGCAATGGACATCAAGGCACATGTTTCCCTTCTCTTGTGTCCATTCAGCCACC
JMSF037K15+ CTCACATAGCAATGGACATCAAGGCACATGTTTCCCTTCTCTTGTGTCCATTCAGCCACC
JMSF012C07+ AGCCACC
JMSF046F14+ CTCACATAGCAATGGACATCAAGGCACATGTTTCCCTTCTCTTGTGTCCATTCAGCCACC
____________________________________________________________
consensus CTCACATAGCAATGGACATCAAGGCACATGTTTCCCTTCTCTTGTGTCCATTCAGCCACC
. : . : . : . : . : . :
rJMSF037K15- ACATCATCCTTGTTATACCACCCTTTCAACTGATCGAGGTTGATGATATTCGAGATGGTT
rJMSF012C07- ACATCATCCTTGTTATACCACCCTTTCAACTGATCGAGGTTGATGATATTCGAGATGGTT
rJMSF046F14- ACATCATCCTTGTTATACCACCCTTTCAACTGATCGAGGTTGATGATATTCGAGATGGTT
JMSF037K15+ ACATCATCCTTGTTATACCACCCTTTCAACTGATCGAGGTTGATGATATTCGAGATGGTT
JMSF012C07+ ACATCATCCTTGTTATACCACCCTTTCAACTGATCGAGGTTGATGATATTCGAGATGGTT
JMSF046F14+ ACATCATCCTTGTTATACCACCCTTTCAACTGATCGAGGTTGATGATATTCGAGATGGTT
____________________________________________________________
consensus ACATCATCCTTGTTATACCACCCTTTCAACTGATCGAGGTTGATGATATTCGAGATGGTT
. : . : . : . : . : . :
rJMSF037K15- AATGTCAAATTCGCGGTAAAATCACAATGTGAAAGTGTATATGTTCTTGGCACAACTCTG
rJMSF012C07- AATGTCAAATTCGCGGTAAAATCACAATGTGAAAGTGTATATGTTCTTGGCACAACTCTG
rJMSF046F14- AATGTCAAATTCGCGGTAAAATCACAATGTGAAAGTGTATATGTTCTTGGCACAACTCTG
JMSF037K15+ AATGTCAAATTCGCGGTAAAATCACAATGTGAAAGTGTATATGTTCTTGGCACAACTCTG
JMSF012C07+ AATGTCAAATTCGCGGTAAAATCACAATGTGAAAGTGTATATGTTCTTGGCACAACTCTG
JMSF046F14+ AATGTCAAATTCGCGGTAAAATCACAATGTGAAAGTGTATATGTTCTTGGCACAACTCTG
____________________________________________________________
consensus AATGTCAAATTCGCGGTAAAATCACAATGTGAAAGTGTATATGTTCTTGGCACAACTCTG
. : . : . : . : . : . :
rJMSF037K15- CTATATGTATCAGTCTCTTCTCCAGTAAATGCAACTT
rJMSF012C07- CTATATGTATCAGTCTCTTCTCCAGTAAATGCAACTTTCAACTTAAAAGCTTCAAATCTT
rJMSF046F14- CTATATGTATCAGTCTCTTCTCCAGTAAATGCAACTTTCAACTTAGAAGCTTCAAATCTT
JMSF037K15+ CTATATGTATCAGTCTCTTCTCCAGTAAATGCAACTTTCAACTTAGAAGCTTCAAATCTT
JMSF012C07+ CTATATGTATCAGTCTCTTCTCCAGTAAATGCAACTTTCAACTTAGAAGCTTCAAATCTT
JMSF046F14+ CTATATGTATCAGTCTCTTCTCCAGTAAATGCAACTTTCAACTTAGAAGCTTCAAATCTT
____________________________________________________________
consensus CTATATGTATCAGTCTCTTCTCCAGTAAATGCAACTTTCAACTTAGAAGCTTCAAATCTT
. : . : . : . : . : . :
rJMSF012C07- GCTGGAGGACCTAACAG
rJMSF046F14- GCTGGAGGACCTAACAGTCTANCAGCCTGGAAGAC
JMSF037K15+ GCTGGAGGACCTAACAGTCTAACAGCCTGGAAGACAAGGGCATTGTAGGTGGGTCTTCTG
JMSF012C07+ GCTGGAGGACCTAACAGTCTAACAGCCTGGAAGACAAGGGCATTGTAGGTGGGTCTTCTG
JMSF046F14+ GCTGGAGGACCTAACAGTCTAACAGCCTGGAAGACAAGGGCATTGTAGGTGGGTCTTCTG
____________________________________________________________
consensus GCTGGAGGACCTAACAGTCTAACAGCCTGGAAGACAAGGGCATTGTAGGTGGGTCTTCTG
. : . : . : . : . : . :
JMSF037K15+ GAGGAGGAAAGAAGAGCAGGAGTCATGGACGGCTTGACGTGGCAACTGTAACAAGGGGAA
JMSF012C07+ GAGGAGGAAAGAAGAGCAGGAGTCATGGACGGCTTGACGTGGCAACTGTAACAAGGGGAA
JMSF046F14+ GAGGAGGAAAGAAGAGCAGGAGTCATGGACGGCTTGACGTGGCAACTGTAACAAGGGGAA
____________________________________________________________
consensus GAGGAGGAAAGAAGAGCAGGAGTCATGGACGGCTTGACGTGGCAACTGTAACAAGGGGAA
. : . : . : . : . : . :
JMSF037K15+ CTTGAAGAAGAAGAAGAAGAAGAAAATGTAGCAGCATTTTGATGGATGAAGAAGTGGGTA
JMSF012C07+ CTTGAAGAAGAAGAAGAAGAAGAAAATGTAGCAGCATTTTGATGGATGAAGAAGTGGGTA
JMSF046F14+ CTTGAAGAAGAAGAAGAAGAAGAAAATGTAGCAGCATTTTGATGGATGAAGAAGTGGGTA
____________________________________________________________
consensus CTTGAAGAAGAAGAAGAAGAAGAAAATGTAGCAGCATTTTGATGGATGAAGAAGTGGGTA
. : . : . : . : . : . :
JMSF037K15+ TTGGCCATGGAATGCATGACAAATTCATCCTCTCTCTCTCTCTCTTCTCCTCC
JMSF012C07+ TTGGCCATGGAATGCATGACAAATTCATCCTCTCTCTCTCTCTCTTCTCCTCCTTATTCT
JMSF046F14+ TTGGCCATGGAATGCATGACAAATTCATCCTCTCTCTCTCTCTCTTCTCCTCCTTATTCT
____________________________________________________________
consensus TTGGCCATGGAATGCATGACAAATTCATCCTCTCTCTCTCTCTCTTCTCCTCCTTATTCT
. : . : . : . : . : . :
JMSF012C07+ CTTCTCTCTCTAAACGCCTCCATCTATCGCTGTGTGTGTAAGT
JMSF046F14+ CTTCTCTCTCTAAACGCCTCCATCTATCGCTGTGTGTGTAAGTTTGTGGCAGCGAGGCTC
____________________________________________________________
consensus CTTCTCTCTCTAAACGCCTCCATCTATCGCTGTGTGTGTAAGTTTGTGGCAGCGAGGCTC