Contig 009532:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028M10Sequence646009532 (3)ref|XP_009628015.1|2e-56PREDICTED: putative phagocytic receptor 1b isoform X1 [Nicotiana tomentosiformi738012653 (3)gb|KHG09925.1|6e-83Putative phagocytic receptor 1b [Gossypium arboreum]
JMSF036I05Sequence646009532 (3)ref|XP_009628015.1|4e-62PREDICTED: putative phagocytic receptor 1b isoform X1 [Nicotiana tomentosiformi709012653 (3)gb|KHG09925.1|1e-83Putative phagocytic receptor 1b [Gossypium arboreum]
JMSF046D06Sequence762009532 (3)ref|XP_009628015.1|6e-54PREDICTED: putative phagocytic receptor 1b isoform X1 [Nicotiana tomentosiformi695012653 (3)ref|XP_009782694.1|6e-60PREDICTED: putative phagocytic receptor 1b isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF036I05+                                                                    CAC
JMSF046D06+                           ACCGAGTATAAGAACTCCACATCAATTTCTTTCTCATTTGTCAC
                      ____________________________________________________________
consensus                             ACCGAGTATAAGAACTCCACATCAATTTCTTTCTCATTTGTCAC
 
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JMSF028M10+                                                                  TTGTA
JMSF036I05+           ATCAACTGTAGAATGCTGGCCTATTCGACAATTGACCGCAAGTACACGGTCTTGATTGTA
JMSF046D06+           ATCAACTGTAGAATGCTGGCCTATTCGACAATTGACCGCAAGTACACGGTCTTGATTGTA
                      ____________________________________________________________
consensus             ATCAACTGTAGAATGCTGGCCTATTCGACAATTGACCGCAAGTACACGGTCTTGATTGTA
 
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JMSF028M10+           AAAAATTTCAAAGTGAGAATGAGTATAAAGATGATATCGGAACTCAACCGCTCCTTCATC
JMSF036I05+           AAAAATTTCAAAGTGAGAATGAGTATAAAGATGATATCGGAACTCAACCGCTCCTTCATC
JMSF046D06+           AAAAATTTCAAAGTGAGAATGAGTATAAAGATGATATCGGAACTCAACCGCTCCTTCATC
                      ____________________________________________________________
consensus             AAAAATTTCAAAGTGAGAATGAGTATAAAGATGATATCGGAACTCAACCGCTCCTTCATC
 
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JMSF028M10+           TTCCTTCCTATCAACCTTCCCAATAAAAGCCCAAACAGGCAAGTCATCATAGTACATTTG
JMSF036I05+           TTCCTTCCTATCAACCTTCCCAATAAAAGCCCAAACAGGCAAGTCATCATAGTACATTTG
JMSF046D06+           TTCCTTCCTATCAACCTTCCCAATAAAAGCCCAAACAGGCAAGTCATCATAGTACATTTG
                      ____________________________________________________________
consensus             TTCCTTCCTATCAACCTTCCCAATAAAAGCCCAAACAGGCAAGTCATCATAGTACATTTG
 
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JMSF028M10+           GAGGTAATAGTCCTGTGAAATTGCATTTTTGAACCACATAACTTCTTCCTTTGTAAGCTT
JMSF036I05+           GAGGTAATAGTCCTGTGAAATTGCATTTTTGAACCACATAACTTCTTCCTTTGTAAGCTT
JMSF046D06+           GAGGTAATAGTCCTGTGAAATTGCATTTTTGAACCACATAACTTCTTCCTTTGTAAGCTT
                      ____________________________________________________________
consensus             GAGGTAATAGTCCTGTGAAATTGCATTTTTGAACCACATAACTTCTTCCTTTGTAAGCTT
 
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JMSF028M10+           TTGCCTACATATGACTTGGGATTCTTTATCCTCCAAGAAAGGAAGCTTATACGGAGCAGA
JMSF036I05+           TTGCCTACATATGACTTGGGATTCTTTATCCTCCAAGAAAGGAAGCTTATACGGAGCAGA
JMSF046D06+           TTGCCTACATATGACTTGGGATTCTTTATCCTCCAAGAAAGGAAGCTTATACGGAGCAGA
                      ____________________________________________________________
consensus             TTGCCTACATATGACTTGGGATTCTTTATCCTCCAAGAAAGGAAGCTTATACGGAGCAGA
 
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JMSF028M10+           TACAAGGCGGTCTCCATTCAATGCCTCACCAAGAGATTCTTTCTTCTTTTTCAGATCATC
JMSF036I05+           TACAAGGCGGTCTCCATTCAATGCCTCACCAAGAGATTCTTTCTTCTTTTTCAGATCATC
JMSF046D06+           TACAAGGCGGTCTCCATTCAATGCCTCACCAAGAGATTCTTTCTTCTTTTTCAGATCATC
                      ____________________________________________________________
consensus             TACAAGGCGGTCTCCATTCAATGCCTCACCAAGAGATTCTTTCTTCTTTTTCAGATCATC
 
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JMSF028M10+           TGGTGGACAGAATGGCATATCAGAAAAAGCATATGTTTCACTAGGATTATGAAATGGCCC
JMSF036I05+           TGGTGGACAGAATGGCATATCAGAAAAAGCATATGTTTCACTAGGATTATGAAATGGCCC
JMSF046D06+           TGGTGGACAGAATGGCATATCAGAAAAAGCA--TGTTTCACTAGGATTATGAAATGGCCC
                      ____________________________________________________________
consensus             TGGTGGACAGAATGGCATATCAGAAAAAGCATATGTTTCACTAGGATTATGAAATGGCCC
 
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JMSF028M10+           AACCTTGTTGCCATAGAGAGGGACTTCATCTCCCCTTTTATACCTATGGGAATAGGCATC
JMSF036I05+           AACCTTGTTGCCATAGAGAGGGACTTCATCTCCCCTTTTATACCTATGGGAATAGGCATC
JMSF046D06+           AACCTTGTTGCCATAGAGAGGGACTTCATCTCCCCTTTTATACCTATGGGAATAGGCATC
                      ____________________________________________________________
consensus             AACCTTGTTGCCATAGAGAGGGACTTCATCTCCCCTTTTATACCTATGGGAATAGGCATC
 
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JMSF028M10+           GGATCTTGCTAGGCCTCCAAGATTCAGAAAAACTATGGTGAATATGAGCATCTCAACAAG
JMSF036I05+           GGATCTTGCTAGGCCTCCAAGATTCAGAAAAACTATGGTGAATATGAGCATCTCAACAAG
JMSF046D06+           GGATCTTGCTAGGCCTCCAAGATTCAGAAAAACTATGGTGAATATGAGCATCTCAACAAG
                      ____________________________________________________________
consensus             GGATCTTGCTAGGCCTCCAAGATTCAGAAAAACTATGGTGAATATGAGCATCTCAACAAG
 
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JMSF028M10+           TTCATTCATCCTGCCTGGCTTGTTAAGTGGGGGAAGAAATGGTACTAAGATTAGAAAGCC
JMSF036I05+           TTCATTCATCCTGCCTGGCTTGTTAAGTGGGGGAAGAAATGGTACTAAGATTAGAAAGCC
JMSF046D06+           TTCATTCATCCTGCCTGGCTTGTTAAGTGGGGGAAGAAATGGTACTAAGATTAGAAAGCC
                      ____________________________________________________________
consensus             TTCATTCATCCTGCCTGGCTTGTTAAGTGGGGGAAGAAATGGTACTAAGATTAGAAAGCC
 
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JMSF028M10+           TCTGGAGTCCAAATTTCTTGCACCAAAGTGTGATTTGAGTCTGGGAAACGGAGGATGAGG
JMSF036I05+           TCTGGAGTCCAAATTTCTTGCACCAAAGTGTGATTTGAGTCT                  
JMSF046D06+           TCTGGAGTCCAAATTTCTTGCACCAAAGTGTGATTTGAGTCTGGGAAACGGAGGATGAGG
                      ____________________________________________________________
consensus             TCTGGAGTCCAAATTTCTTGCACCAAAGTGTGATTTGAGTCTGGGAAACGGAGGATGAGG
 
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JMSF028M10+           CCGAAAGTCCAAGAAACTACGGACTTTCCTGCTCATCGTT                    
JMSF046D06+           CCGAAAGTCCAAGAAACTACGGACTTTCCTGCTCATCGTTGAATGTTGACGGAGACTTTC
                      ____________________________________________________________
consensus             CCGAAAGTCCAAGAAACTACGGACTTTCCTGCTCATCGTTGAATGTTGACGGAGACTTTC