clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF022L10 | Sequence | 511 | 009521 (3) | ref|XP_006361560.1| | 118 | PREDICTED: uncharacterized protein LOC102581593 [Solanum tuberosum] | 692 | 006940 (3) | ref|XP_009766372.1| | 7e-77 | PREDICTED: uncharacterized protein LOC104217757 isoform X2 [Nicotiana sylvestri |
JMFF043J23 | Sequence | 635 | 009521 (3) | ref|XP_006361560.1| | 148 | PREDICTED: uncharacterized protein LOC102581593 [Solanum tuberosum] | 604 | 006940 (3) | ref|XP_009766372.1| | 3e-53 | PREDICTED: uncharacterized protein LOC104217757 isoform X2 [Nicotiana sylvestri |
JMSF044N07 | Sequence | 675 | 009521 (3) | ref|XP_006361560.1| | 164 | PREDICTED: uncharacterized protein LOC102581593 [Solanum tuberosum] | 704 | 006940 (3) | ref|XP_009766372.1| | 3e-81 | PREDICTED: uncharacterized protein LOC104217757 isoform X2 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
JMFF043J23+ CCCAATCAATCGAACCTACTAAAACCTTATC
JMSF044N07+ TACTAAAACCTTATC
____________________________________________________________
consensus CCCAATCAATCGAACCTACTAAAACCTTATC
. : . : . : . : . : . :
JMFF043J23+ CCCAACCAACACTCTCCTCTGNATCTTCTTTAACACCGCCTTCACCACACATAGTAGTTC
JMSF044N07+ CCCAACCAACACTCTCCTCTTGATCTTCTTTAACACCGCCTTCACCACACATAGTAGTTC
____________________________________________________________
consensus CCCAACCAACACTCTCCTCTTGATCTTCTTTAACACCGCCTTCACCACACATAGTAGTTC
. : . : . : . : . : . :
JMFF022L10+ CTACCAGTCCAGAACCACTATAAACTTC
JMFF043J23+ CACTCCAACTCCCGGAGCATCAGTGGAACGTTCTACCAGTCCAGAACCACTATAAACTTC
JMSF044N07+ CACTCCAACTCCCGGAGCATCAGTGGAACGTTCTACCAGTCCAGAACCACTATAAACTTC
____________________________________________________________
consensus CACTCCAACTCCCGGAGCATCAGTGGAACGTTCTACCAGTCCAGAACCACTATAAACTTC
. : . : . : . : . : . :
JMFF022L10+ CGAAGGCAATGATTGCACTATAACGCGCATGAAATTAGCCTGTGAAGCAGCAACCATTCC
JMFF043J23+ CGAAGGCAATGATTGCACTATAACGCGCATGAAATTAGCCTGTGAAGCAGCAACCATTCC
JMSF044N07+ CGAAGGCAATGATTGCACTATAACGCGCATGAAATTAGCCTGTGAAGCAGCAACCATTCC
____________________________________________________________
consensus CGAAGGCAATGATTGCACTATAACGCGCATGAAATTAGCCTGTGAAGCAGCAACCATTCC
. : . : . : . : . : . :
JMFF022L10+ CACTGCTTGGTCCTGAGAGAGATTTGTTTTATCTTCGCTGGAGAGAACCGGAGCAAGAGG
JMFF043J23+ CACTGCTTGGTCCTGAGAGAGATTTGTTTTATCTTCGCTGGAGAGAACCGGAGCAAGAGG
JMSF044N07+ CACTGCTTGGTCCTGAGAGAGATTTGTTTTATCTTCGCTGGAGAGAACCGGAGCAAGAGG
____________________________________________________________
consensus CACTGCTTGGTCCTGAGAGAGATTTGTTTTATCTTCGCTGGAGAGAACCGGAGCAAGAGG
. : . : . : . : . : . :
JMFF022L10+ CGAGAATTGCTTGATAGTCTCGCGAGCCTTGAGGAGGTGCTTATTTGGCTGTTGTAGTTT
JMFF043J23+ CGAGAATTGCTTGATAGTCTCGCGAGCCTTGAGGAGGTGCTTATTTGGCTGTTGTAGTTT
JMSF044N07+ CGAGAATTGCTTGATAGTCTCGCGAGCCTTGAGGAGGTGCTTATTTGGCTGTTGTAGTTT
____________________________________________________________
consensus CGAGAATTGCTTGATAGTCTCGCGAGCCTTGAGGAGGTGCTTATTTGGCTGTTGTAGTTT
. : . : . : . : . : . :
JMFF022L10+ CTTAGGAACATTCTTAGAGCCTTGGTGGTTGTGGCGAGCTGCCAAGACAATGGCAAATGG
JMFF043J23+ CTTAGGAACATTCTTAGAGCCTTGGTGGTTGTGGCGAGCTGCCAAGACAATGGCAAATGG
JMSF044N07+ CTTAGGAACATTCTTAGAGCCTTGGTGGTTGTGGCGAGCTGCCAAGACAATGGCAAATGG
____________________________________________________________
consensus CTTAGGAACATTCTTAGAGCCTTGGTGGTTGTGGCGAGCTGCCAAGACAATGGCAAATGG
. : . : . : . : . : . :
JMFF022L10+ GGAAGATAAGTAGGTGTGCCGCGAGGCCGAGGCACTGAAAGTTGAAAATAGAAGCGGCAC
JMFF043J23+ GGAAGATAAGTAGGTGTGCCGCGAGGCCGAGGCACTGAAAGTTGAAAATAGAAGCGGCAC
JMSF044N07+ GGAAGATAAGTAGGTGTGCCGCGAGGCCGAGGCACTGAAAGTTGAAAATAGAAGCGGCAC
____________________________________________________________
consensus GGAAGATAAGTAGGTGTGCCGCGAGGCCGAGGCACTGAAAGTTGAAAATAGAAGCGGCAC
. : . : . : . : . : . :
JMFF022L10+ CACACGTTGCCGGAGAAGAGACATTGAAGCGATTTTCATTAATTGAGGTAATAGAAGACA
JMFF043J23+ CACACGTTGCCGGAGAAGAGACATTGAAGCGATTTTCATTAATTGAGGTAATAGAAGACA
JMSF044N07+ CACACGTTGCCGGAGAAGAGACATTGAAGCGATTTTCATTAATTGAGGTAATAGAAGACA
____________________________________________________________
consensus CACACGTTGCCGGAGAAGAGACATTGAAGCGATTTTCATTAATTGAGGTAATAGAAGACA
. : . : . : . : . : . :
JMFF022L10+ AACTTGTTATGCTCCCTTTTATTTCCCCAAATCCACTTACTAATCTGGTTCTTCCGCTAA
JMFF043J23+ AACTTGTTATGCTCCCTTTTATTTCCCCAAATCCACTTACTAATCTGGTTCTTCCGCTAA
JMSF044N07+ AACTTGTTATGCTCCCTTTTATTTCCCCAAATCCACTTACTAATCTGGTTCTTCCGCTAA
____________________________________________________________
consensus AACTTGTTATGCTCCCTTTTATTTCCCCAAATCCACTTACTAATCTGGTTCTTCCGCTAA
. : . : . : . : . : . :
JMFF022L10+ ACACTCTGAACGGCGATGGTGAGACTTGAAGTAACCGTGAGAAGAGGGCGAGAGACGGCC
JMFF043J23+ ACACTCTGAACGGCGATGGTGAGACTTGAAGTAACCGTGAGAAGAGGGCGAGAGACGGCC
JMSF044N07+ ACACTCTGAACGGCGATGGTGAGACTTGAAGTAACCGTGAGAAGAGGGCGAGAGACGGCC
____________________________________________________________
consensus ACACTCTGAACGGCGATGGTGAGACTTGAAGTAACCGTGAGAAGAGGGCGAGAGACGGCC
. : . : . : . : . : . :
JMSF044N07+ GGTGTATTGTGCAGCATAGATGACCGGAGAAGATAGGGAGTGTAGCTTTTAACTTCTCTC
____________________________________________________________
consensus GGTGTATTGTGCAGCATAGATGACCGGAGAAGATAGGGAGTGTAGCTTTTAACTTCTCTC