clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF035E07 | Sequence | 523 | 009517 (3) | gb|AAT39949.1| | 3e-99 | Homeobox-leucine zipper protein HAT7 , putative [Solanum demissum] | 705 | 009738 (4) | gb|KHN08691.1| | 1e-54 | Homeobox-leucine zipper protein ATHB-13 [Glycine soja] |
JMSF011D13 | Sequence | 334 | 009517 (3) | gb|AAT39949.1| | 3e-08 | Homeobox-leucine zipper protein HAT7 , putative [Solanum demissum] | 735 | 009738 (4) | ref|XP_011071017.1| | 2e-36 | PREDICTED: homeobox-leucine zipper protein ATHB-13 [Sesamum indicum] |
JMSF044C13 | Sequence | 409 | 009517 (3) | 626 | 009738 (4) | ref|XP_011071017.1| | 1e-34 | PREDICTED: homeobox-leucine zipper protein ATHB-13 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMFF035E07+ T
____________________________________________________________
consensus T
. : . : . : . : . : . :
JMFF035E07+ GGAGGGCATCATTTTCAGATTTGATGGCATCAAACTGTCTCTTAAGAACCTCATAATCTT
____________________________________________________________
consensus GGAGGGCATCATTTTCAGATTTGATGGCATCAAACTGTCTCTTAAGAACCTCATAATCTT
. : . : . : . : . : . :
JMFF035E07+ TCTCCAACTGCTTAGTTTTCCACCTAGCCCTCCTATTCTGAAACCAAATGGCAATCTGCC
____________________________________________________________
consensus TCTCCAACTGCTTAGTTTTCCACCTAGCCCTCCTATTCTGAAACCAAATGGCAATCTGCC
. : . : . : . : . : . :
JMFF035E07+ TAGGCTGCAGCCCAAGAGCCCTGGCTAGCTGCATTTTCCTCTCAGGCTCAAGCTTGTTTC
____________________________________________________________
consensus TAGGCTGCAGCCCAAGAGCCCTGGCTAGCTGCATTTTCCTCTCAGGCTCAAGCTTGTTTC
. : . : . : . : . : . :
JMFF035E07+ CCAGCTCAAAGTTCTTCTCAAGAGTCTTCACTTGCTCCATGTTCAATCTCCTCTTCTTCT
____________________________________________________________
consensus CCAGCTCAAAGTTCTTCTCAAGAGTCTTCACTTGCTCCATGTTCAATCTCCTCTTCTTCT
. : . : . : . : . : . :
JMFF035E07+ CCCCTGCCTGTGACCCATCATCTGACAGATCATCCTCTCCACCATGCCCACCTTCTTCGC
____________________________________________________________
consensus CCCCTGCCTGTGACCCATCATCTGACAGATCATCCTCTCCACCATGCCCACCTTCTTCGC
. : . : . : . : . : . :
JMFF035E07+ AATTCCCCGTCTCCACCCCCGAAAATGACATAGATCTCTTCCCTAGAAATGATGCCACTC
JMSF044C13+ CCCCCGAAAATGACATAGATNTNTTCCCTAGAAATGATGCCNCTC
____________________________________________________________
consensus AATTCCCCGTCTCCACCCCCGAAAATGACATAGATCTCTTCCCTAGAAATGATGCCACTC
. : . : . : . : . : . :
JMFF035E07+ CATGGAAATCTTGAGGAGTGCAAGAGGGGAGGAGGGGGTTGAGAGAAGTGGAGGGTTGAT
JMSF011D13+ GGGAGGAGGGGGTTGAGAGAAGTGGAGGGTTGAT
JMSF044C13+ CNTGGAAATCTTGAGGAGTGCNAGAGGGGAGGAGGGGGTTGAGAGAAGTGGAGGGTTGAT
____________________________________________________________
consensus CATGGAAATCTTGAGGAGTGCAAGAGGGGAGGAGGGGGTTGAGAGAAGTGGAGGGTTGAT
. : . : . : . : . : . :
JMFF035E07+ GGTCATCTTCATGGGGAGTTTGGAGCATGAAATTGGTGGGGAAGAAAGCCATTTCAATGC
JMSF011D13+ GGTCATCTTCATGGGGAGTTTGGAGCATGAAATTGGTGGGGAAGAAAGCCATTTCAATGC
JMSF044C13+ GGTCATNTTCNTGGGGAGTTTGGAGCNTGAAATTGGTGGGGAAGAAAGCCNTTTCAATGC
____________________________________________________________
consensus GGTCATCTTCATGGGGAGTTTGGAGCATGAAATTGGTGGGGAAGAAAGCCATTTCAATGC
. : . : . : . : . : . :
JMFF035E07+ AAGTACTCATGATAATCTTTGGCTTTGATTCATGCTTGGAAG
JMSF011D13+ AAGTACTCNTGATAATCTTTGGCTTTGATTCNTGCTTGGAAGAGTGATCAAAGAATNGAA
JMSF044C13+ AAGTACTCNTGATAATCTTTGGCTTTGATTCNTGCTTGGAAGAGTGATCAAAGAATNGAA
____________________________________________________________
consensus AAGTACTCATGATAATCTTTGGCTTTGATTCATGCTTGGAAGAGTGATCAAAGAATNGAA
. : . : . : . : . : . :
JMSF011D13+ GATAGGCTTATATACNTACNGGGAACTTTGATNTTTTAGTTGCGGAAGCNAATAGNGAAG
JMSF044C13+ GATAGGCTTATATACATACNGGGAACTTTGATNTTTTAGTTGCGGAAGCAAATAGAGAAG
____________________________________________________________
consensus GATAGGCTTATATACATACNGGGAACTTTGATNTTTTAGTTGCGGAAGCAAATAGAGAAG
. : . : . : . : . : . :
JMSF011D13+ NGTAGTTTTCNAGAATATTTCTTTCNGTTAACCTCNAAGAAAAGAAAAGNGAAAAAAAAA
JMSF044C13+ AGTAGTTTTCNAGAATATTTNTTTCNGTTAACNTCAAAGAAAAGAAAAGNGAAAAAAAAA
____________________________________________________________
consensus AGTAGTTTTCNAGAATATTTCTTTCNGTTAACCTCAAAGAAAAGAAAAGNGAAAAAAAAA
. : . : . : . : . : . :
JMSF011D13+ ATAATAATAATGGTGTTTGGGAATTGATTGGGAGCGGAGGAGAGAGTATGGATGGATTCC
JMSF044C13+ ATAATAATAATGGTGTTTGGGAATTGATTGGGAGCGGAGGAGAGAGTATGGATGGATTCC
____________________________________________________________
consensus ATAATAATAATGGTGTTTGGGAATTGATTGGGAGCGGAGGAGAGAGTATGGATGGATTCC