Contig 009507:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF045D11-                                             ATGCTTGCAGTTGGTTTTGTTACAT
JMSF042L09+                                                                    CAT
                      ____________________________________________________________
consensus                                                ATGCTTGCAGTTGGTTTTGTTACAT
 
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rJMSF045D11-          TGAAACATGTTGATGTTCTTCTGAGTTTTACCTCACAATAGAGTAGGTAATGAACTCTGT
JMSF042L09+           TGAAACATGTTGATGTTCTTCTGAGTTTTACCTCACAATAGAGTAGGTAATGAACTCTGT
                      ____________________________________________________________
consensus             TGAAACATGTTGATGTTCTTCTGAGTTTTACCTCACAATAGAGTAGGTAATGAACTCTGT
 
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rJMSF045D11-          TGAGGTGAACTGGAATGGTTGAAGTGGAATGGGATTCGGCCTAGGTCCATAGACTTTAAT
JMSF045D11+               GTGAACTGGAATGGTTGAAGTGGAATGGGATTCGGCCTAGGTCCATAGACTTTAAT
JMSF042L09+           TGAGGTGAACTGGAATGGTTGAAGTGGAATGGGATTCGGCCTAGGTCCATAGACTTTAAT
                      ____________________________________________________________
consensus             TGAGGTGAACTGGAATGGTTGAAGTGGAATGGGATTCGGCCTAGGTCCATAGACTTTAAT
 
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rJMSF045D11-          CTGGCGGATATGAGTGTCCCTCCCATTCAGATGATTTGACAAAATTGTCACTTGCAACAT
JMSF045D11+           CTGGCGGATATGAGTGTCCCTCCCATTCAGATGATTTGACAAAATTGTCACTTGCAACAT
JMSF042L09+           CTGGCGGATATGAGTGTCCCTCCCATTCAGATGATTTGACAAAATTGTCACTTGCAACAT
                      ____________________________________________________________
consensus             CTGGCGGATATGAGTGTCCCTCCCATTCAGATGATTTGACAAAATTGTCACTTGCAACAT
 
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rJMSF045D11-          GAAAGTGTTGACAAAGGTTTCACGAGGATCATTCCCAGACAATGATATATACACCCATCC
JMSF045D11+           GAAAGTGTTGACAAAGGTTTCACGAGGATCATTCCCAGACAATGATATATACACCCATCC
JMSF042L09+           GAAAGTGTTGACAAAGGTTTCACGAGGATCATTCCCAGACAATGATATATACACCCATCC
                      ____________________________________________________________
consensus             GAAAGTGTTGACAAAGGTTTCACGAGGATCATTCCCAGACAATGATATATACACCCATCC
 
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rJMSF045D11-          GGTTGGCTTGACAAGTTCCACTGATTTTATCTCCTTCAAGTTGTGGAAACCATCACCGGC
JMSF045D11+           GGTTGGCTTGACAAGTTCCACTGATTTTATCTCCTTCAAGTTGTGGAAACCATCACCGGC
JMSF042L09+           GGTTGGCTTGACAAGTTCCACTGATTTTATCTCCTTCAAGTTGTGGAAACCATCACCGGC
                      ____________________________________________________________
consensus             GGTTGGCTTGACAAGTTCCACTGATTTTATCTCCTTCAAGTTGTGGAAACCATCACCGGC
 
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rJMSF045D11-          ACGAATTGAAATCTTACTAGGGGTGTAGCTCTCATCAAGCTTGAAATCAACATATAAAAC
JMSF045D11+           ACGAATTGAAATCTTACTAGGGGTGTAGCTCTCATCAAGCTTGAAATCAACATATAAAAC
JMSF042L09+           ACGAATTGAAATCTTACTAGGGGTGTAGCTCTCATCAAGCTTGAAATCAACATATAAAAC
                      ____________________________________________________________
consensus             ACGAATTGAAATCTTACTAGGGGTGTAGCTCTCATCAAGCTTGAAATCAACATATAAAAC
 
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rJMSF045D11-          TACTAATTGGAGCTTTACTTTCTTCTGGAACTGTATATTTACCAGATGAGGTTGTGCACC
JMSF045D11+           TACTAATTGGAGCTTTACTTTCTTCTGGAACTGTATATTTACCAGATGAGGTTGTGCACC
JMSF042L09+           TACTAATTGGAGCTTTACTTTCTTCTGGAACTGTATATTTACCAGATGAGGTTGTGCACC
                      ____________________________________________________________
consensus             TACTAATTGGAGCTTTACTTTCTTCTGGAACTGTATATTTACCAGATGAGGTTGTGCACC
 
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rJMSF045D11-          ATCAGATTGCCAGTATGTATCAAGGTTATCATCTCGAAGGGAAGTAATGCCATTTCCAGC
JMSF045D11+           ATCAGATTGCCAGTATGTATCAAGGTTATCATCTCGAAGGGAAGTAATGCCATTTCCAGC
JMSF042L09+           ATCAGATTGCCAGTATGTATCAAGGTTATCATCTCGAAGGGAAGTAATGCCATTTCCAGC
                      ____________________________________________________________
consensus             ATCAGATTGCCAGTATGTATCAAGGTTATCATCTCGAAGGGAAGTAATGCCATTTCCAGC
 
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rJMSF045D11-          TTTGCAAGAGCTGACACTCCAAGCAGCCTTCTTAGCCATCTCACAGAGGTCATCATCAAC
JMSF045D11+           TTTGCAAGAGCTGACACTCCAAGCAGCCTTCTTAGCCATCTCACAGAGGTCATCATCAAC
JMSF042L09+           TTTGCAAGAGCTGACACTCCAAGCAGCCTTCTTAGCCATCTCACAGAGGTCATCATCAAC
                      ____________________________________________________________
consensus             TTTGCAAGAGCTGACACTCCAAGCAGCCTTCTTAGCCATCTCACAGAGGTCATCATCAAC
 
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rJMSF045D11-          CAAAAGCTGTTGGCTACCTCCTGTCAGCTTCCCTTCTTCCTCTCCTTCTGATGAATCTGC
JMSF045D11+           CAAAAGCTGTTGGCTACCTCCTGTCAGCTTCCCTTCTTCCTCTCCTTCTGATGAATCTGC
JMSF042L09+           CAAAAGCTGTTGGCTACCTCCTGTCAGCTTCCCTTCTTCCTCTCCTTCTGATGAATCTGC
                      ____________________________________________________________
consensus             CAAAAGCTGTTGGCTACCTCCTGTCAGCTTCCCTTCTTCCTCTCCTTCTGATGAATCTGC
 
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rJMSF045D11-          CATTGAGTTTACCTTACTTCGGTGGACTTTGCTGCTTTTGTCAGAGAAATCCGGCGGTGA
JMSF045D11+           CATTGAGTTTACCTTACTTCGGTGGACTTTGCTGCTTTTGTCAGAGAAATCCGGCGGTGA
JMSF042L09+           CATTGAGTTTACCTTACTTCGGTGGACTTTG---CTTTTGTCAGAGAAATCCGGCGGTGA
                      ____________________________________________________________
consensus             CATTGAGTTTACCTTACTTCGGTGGACTTTGCTGCTTTTGTCAGAGAAATCCGGCGGTGA
 
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rJMSF045D11-          GCGAGTGAATGGTCTAGCCGTGAGCGGGTAACTGGTCCTGCAGTAGGCGAAGTTGACAAC
JMSF045D11+           GCGAGTGAATGGTCTAGCCGTGAGCGGGTAACTGGTCCTGCAGTAGGCGAAGTTGACAAC
JMSF042L09+           GCGAGTGAATGGTCTAGCCGTGAGCGGGTAACTGGTCCTGCAGTAGGCGAAGTTGACAAC
                      ____________________________________________________________
consensus             GCGAGTGAATGGTCTAGCCGTGAGCGGGTAACTGGTCCTGCAGTAGGCGAAGTTGACAAC
 
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rJMSF045D11-          GAGCTTGGAGTAATGGAGTCTGGTCCGTGGTC                            
JMSF045D11+           GAGCTTGGAGTAATGGAGTCTGGTCCGTGGTCCGGCGAGGCAGCGACTTTAGCTTGGAGC
JMSF042L09+           GAGCTTGGAGTAATGGAGTCTGGTCCGTGGTCCGGCGAGGCAGCGACTTTAGCTTGGAGC
                      ____________________________________________________________
consensus             GAGCTTGGAGTAATGGAGTCTGGTCCGTGGTCCGGCGAGGCAGCGACTTTAGCTTGGAGC
 
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JMSF045D11+           TTTGCGGCTACGTCGCGACTCGCAACGAGTT                             
JMSF042L09+           TTTGCGGCTACGTCGCGACTCGCAACGAGTTAGGATTTCTGATTTTAGTTTTTCAAATTC
                      ____________________________________________________________
consensus             TTTGCGGCTACGTCGCGACTCGCAACGAGTTAGGATTTCTGATTTTAGTTTTTCAAATTC