| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011P10 | Sequence | 226 | 009506 (4) | 720 | 004359 (5) | ref|XP_011081192.1| | 5e-98 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind | |||
| JMSF041N22 | Sequence | 762 | 009506 (4) | ref|XP_002284920.3| | 1e-45 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis | 613 | 004359 (5) | ref|XP_011081192.1| | 9e-65 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind |
| JMSF042K19 | Sequence | 801 | 009506 (4) | ref|XP_002284920.3| | 3e-71 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis | 729 | 004359 (5) | ref|XP_011081192.1| | 6e-98 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind |
| JMSF049F07 | Sequence | 708 | 009506 (4) | dbj|BAJ16226.1| | 9e-27 | sodium-dependent pyruvate transporter [Flaveria trinervia] | 777 | 004359 (5) | ref|XP_011081192.1| | 1e-109 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind |
This contig is upended
. : . : . : . : . : . :
JMSF042K19+ CCTCCAGGACAGCATGAAACC
____________________________________________________________
consensus CCTCCAGGACAGCATGAAACC
. : . : . : . : . : . :
JMSF042K19+ AGGATAAGACCAGTTGCAAGGGGAGCAGACAATTTTAGAGCCCTTGAAATGGCATAGCCT
____________________________________________________________
consensus AGGATAAGACCAGTTGCAAGGGGAGCAGACAATTTTAGAGCCCTTGAAATGGCATAGCCT
. : . : . : . : . : . :
JMSF041N22+ ACAGTCCATGGGTTCCGC
JMSF042K19+ AACAGTGGTTTAATTAAGTATTGTGCCAAAAATCCTACACCCACAGTCCATGGGTTCCGC
____________________________________________________________
consensus AACAGTGGTTTAATTAAGTATTGTGCCAAAAATCCTACACCCACAGTCCATGGGTTCCGC
. : . : . : . : . : . :
JMSF041N22+ AGACAGCGTCTGAAGTCATCAAAAGTCAGCGTTAATCCCATCGAGAGCATGAGGAATCCC
JMSF042K19+ AGACAGCGTCTGAAGTCATCAAAAGTCAGCGTTAATCCCATCGAGAGCATGAGGAATCCC
____________________________________________________________
consensus AGACAGCGTCTGAAGTCATCAAAAGTCAGCGTTAATCCCATCGAGAGCATGAGGAATCCC
. : . : . : . : . : . :
JMSF041N22+ AAACTAAGAGTGAAAAGGTCAGTTTCCAGCCAAGTCACCGCGGAAGGCTTGTAGATACCA
JMSF042K19+ AAACTAAGAGTGAAAAGGTCAGTTTCCAGCCAAGTCACCGCGGAAGGCTTGTAGATACCA
____________________________________________________________
consensus AAACTAAGAGTGAAAAGGTCAGTTTCCAGCCAAGTCACCGCGGAAGGCTTGTAGATACCA
. : . : . : . : . : . :
JMSF041N22+ ATGACAGTACCTAATATAACCCACACAGGAAAAAGTGTTGTCAAAGTCTCAATGATTCTT
JMSF049F07+ ACCCACACAGGAAAAAGTGTTGTCAAAGTCTCAATGATTCTT
JMSF042K19+ ATGACAGTACCTAATATAACCCACACAGGAAAAAGTGTTGTCAAAGTCTCAATGATTCTT
____________________________________________________________
consensus ATGACAGTACCTAATATAACCCACACAGGAAAAAGTGTTGTCAAAGTCTCAATGATTCTT
. : . : . : . : . : . :
JMSF041N22+ TCATACTGGCTCATGCCACTAGAAGAATCACCTGGAATATCTCCAGATACATTTGTAGCC
JMSF049F07+ TCATACTGGCTCATGCCACTAGAAGAATCACCTGGAATATCTCCAGATACATTTGTAGCC
JMSF042K19+ TCATACTGGCTCATGCCACTAGAAGAATCACCTGGAATATCTCCAGATACATTTGTAGCC
____________________________________________________________
consensus TCATACTGGCTCATGCCACTAGAAGAATCACCTGGAATATCTCCAGATACATTTGTAGCC
. : . : . : . : . : . :
JMSF041N22+ GCCTTGCAAGAAAGTCTTAATTTCCACAAAGCAGGGGTTTTTATAGAAGAAAGCTTTAGC
JMSF049F07+ GCCTTGCAAGAAAGTCTTAATTTCCACAAAGCAGGGGTTTTTATAGAAGAAAGCTTTAGC
JMSF042K19+ GCCTTGCAAGAAAGTCTTAATTTCCACAAAGCAGGGGTTTTTATAGAAGAAAGCTTTAGC
____________________________________________________________
consensus GCCTTGCAAGAAAGTCTTAATTTCCACAAAGCAGGGGTTTTTATAGAAGAAAGCTTTAGC
. : . : . : . : . : . :
JMSF041N22+ ATTCCATCAACTGAAACTTGCGGCTTATTTTGAATCCTCAAGCAATTTTTCTTAGGCTCA
JMSF049F07+ ATTCCATCAACTGAAACTTGCGGCTTATTTTGAATCCTCAAGCAATTTTTCTTAGGCTCA
JMSF042K19+ ATTCCATCAACTGAAACTTGCGGCTTATTTTGAATCCTCAAGCAATTTTTCTTAGGCTCA
____________________________________________________________
consensus ATTCCATCAACTGAAACTTGCGGCTTATTTTGAATCCTCAAGCAATTTTTCTTAGGCTCA
. : . : . : . : . : . :
JMSF041N22+ GTTTTACTAACCCCATCTCTAAAACATAAATGGGATTGAATCCTCCTGGGAGAAAAACCA
JMSF049F07+ GTTTTACTAACCCCATCTCTAAAACATAAATGGGATTGAATCCTCCTGGGAGAAAAACCA
JMSF042K19+ GTTTTACTAACCCCATCTCTAAAACATAAATGGGATTGAATCCTCCTGGGAGAAAAACCA
____________________________________________________________
consensus GTTTTACTAACCCCATCTCTAAAACATAAATGGGATTGAATCCTCCTGGGAGAAAAACCA
. : . : . : . : . : . :
JMSF041N22+ TGACTTGGTTTCTGAGAAGGATCAAACGACAGAAATCTAGAGTCTTTTCCCACAAATCTT
JMSF011P10+ TGAGAAGGATCAAACGACAGAAATCTAGAGTCTTTTCCCACAAATCTT
JMSF049F07+ TGACTTGGTTTCTGAGAAGGATCAAACGACAGAAATCTAGAGTCTTTTCCCACAAATCTT
JMSF042K19+ TGACTTGGTTTCTGAGAAGGATCAAACGACAGAAATCTAGAGTCTTTTCCCACAAATCTT
____________________________________________________________
consensus TGACTTGGTTTCTGAGAAGGATCAAACGACAGAAATCTAGAGTCTTTTCCCACAAATCTT
. : . : . : . : . : . :
JMSF041N22+ GAAATAGAGGCCATGGGTTGATTTGATGAAGCTGCAGTGGGGAGTTTTGTGTCCAAGGTG
JMSF011P10+ GAAATAGAGGCCATGGGTTGATTTGATGAAGCTGCAGTGGGGAGTTTTGTGTCCAAGGTG
JMSF049F07+ GAAATAGAGGCCATGGGTTGATTTGATGAAGCTGCAGTGGGGAGTTTTGTGTCCAAGGTG
JMSF042K19+ GAAATAGAGGCCATGGGTTGATTTGATGAAGCTGCAGTGGGGAGTTTTGTGTCCAAGGTG
____________________________________________________________
consensus GAAATAGAGGCCATGGGTTGATTTGATGAAGCTGCAGTGGGGAGTTTTGTGTCCAAGGTG
. : . : . : . : . : . :
JMSF041N22+ AGTAAATGAACAGGGCTTTCAGCTGGAAAGTGAAGTGGAACAAGGAAGCCAAGGGGGAAA
JMSF011P10+ AGTAAATGAACAGGGCTTTCAGCTGGAAAGTGAAGTGGAACAAGGAAGCCAAGGGGGAAA
JMSF049F07+ AGTAAATGAACAGGGCTTTCAGCTGGAAAGTGAAGTGGAACAAGGAAGCCAAGGGGGAAA
JMSF042K19+ AGTAAATGAACAGGGCTTTCAGCTGGAAAGTGAAGTGGAACAAGGAAGCCAAGGGGGAAA
____________________________________________________________
consensus AGTAAATGAACAGGGCTTTCAGCTGGAAAGTGAAGTGGAACAAGGAAGCCAAGGGGGAAA
. : . : . : . : . : . :
JMSF041N22+ AGTCACAATCTCAGTCTCACGGAGGATGAGGGTCGGGATTGAAGATATTTGGAGG
JMSF011P10+ AGTCACAATCTCAGTCTCACGGAGGATGAGGGTCGGGATTGAAGATATTTGGAGG
JMSF049F07+ AGTCACAATCTCAGTCTCACGGAGGATGAGGGTCGGGATTGAAGATATTTGGAGG
JMSF042K19+ AGTCACAATCTCAGTCTCACGGAGGATGAGGGTCGGGATTGAAGATATTTGGAGGTCGTC
____________________________________________________________
consensus AGTCACAATCTCAGTCTCACGGAGGATGAGGGTCGGGATTGAAGATATTTGGAGGTCGTC